Wall clock time and date at job start Tue Mar 31 2020 14:11:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46912 * 2 1 4 4 C 1.31865 * 124.30415 * 90.00190 * 3 2 1 5 5 C 1.45095 * 114.81396 * 179.97438 * 4 3 2 6 6 C 1.39741 * 111.99484 * 0.02562 * 5 4 3 7 7 N 1.33908 * 119.12331 * 179.97438 * 6 5 4 8 8 C 1.31413 * 121.02786 * 0.02562 * 7 6 5 9 9 Cl 1.73597 * 118.92680 * 180.02562 * 8 7 6 10 10 N 1.32188 * 122.14195 * 0.02562 * 8 7 6 11 11 C 1.32467 * 121.17836 * 359.95700 * 10 8 7 12 12 N 1.38327 * 120.51933 * 180.02562 * 11 10 8 13 13 C 1.46502 * 119.99972 * 359.97438 * 12 11 10 14 14 C 1.52997 * 109.47199 * 180.02562 * 13 12 11 15 15 C 1.52996 * 109.47176 * 180.02562 * 14 13 12 16 16 C 1.50699 * 109.47085 * 180.02562 * 15 14 13 17 17 H 1.08002 * 120.00134 * 359.97438 * 16 15 14 18 18 C 1.37884 * 120.00143 * 180.02562 * 16 15 14 19 19 N 1.31519 * 119.99498 * 359.97438 * 18 16 15 20 20 Si 1.86793 * 120.00319 * 179.97438 * 18 16 15 21 21 H 1.48509 * 109.46941 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47002 * 119.99497 * 20 18 16 23 23 H 1.48496 * 109.47212 * 240.00258 * 20 18 16 24 24 S 1.75355 * 124.30148 * 269.70501 * 3 2 1 25 25 H 1.09001 * 109.47194 * 299.99742 * 1 2 3 26 26 H 1.08992 * 109.47399 * 59.99914 * 1 2 3 27 27 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47398 * 120.00078 * 2 1 3 29 29 H 1.09001 * 109.47194 * 240.00258 * 2 1 3 30 30 H 1.07997 * 122.59165 * 359.97438 * 4 3 2 31 31 H 0.97000 * 119.99907 * 180.02562 * 12 11 10 32 32 H 1.08998 * 109.46973 * 300.00227 * 13 12 11 33 33 H 1.09000 * 109.46754 * 60.00255 * 13 12 11 34 34 H 1.09003 * 109.47164 * 300.00692 * 14 13 12 35 35 H 1.09000 * 109.47246 * 59.99893 * 14 13 12 36 36 H 1.09007 * 109.46927 * 300.00132 * 15 14 13 37 37 H 1.09000 * 109.47360 * 59.99669 * 15 14 13 38 38 H 0.97001 * 119.99395 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2800 2.1215 1.0893 5 6 2.7576 3.4706 0.8500 6 6 2.8582 3.7559 -0.5142 7 7 3.2859 4.9657 -0.8972 8 6 3.6101 5.8811 -0.0118 9 17 4.1574 7.4315 -0.5690 10 7 3.5332 5.6598 1.2891 11 6 3.1207 4.4936 1.7631 12 7 3.0448 4.2770 3.1272 13 6 3.4228 5.3414 4.0601 14 6 3.2489 4.8458 5.4970 15 6 3.6430 5.9577 6.4713 16 6 3.4722 5.4692 7.8867 17 1 3.1176 4.4662 8.0727 18 6 3.7677 6.3032 8.9442 19 7 4.1991 7.5248 8.7176 20 14 3.5554 5.6981 10.6986 21 1 3.0601 4.2981 10.6828 22 1 4.8616 5.7536 11.4028 23 1 2.5750 6.5614 11.4048 24 16 2.3687 2.3501 -1.4486 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 2.1384 1.7221 2.0826 31 1 2.7421 3.4200 3.4660 32 1 4.4645 5.6166 3.8946 33 1 2.7867 6.2112 3.8958 34 1 2.2073 4.5702 5.6628 35 1 3.8852 3.9761 5.6610 36 1 4.6845 6.2335 6.3056 37 1 3.0064 6.8271 6.3072 38 1 4.4073 8.1114 9.4615 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168428242.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:14 Heat of formation + Delta-G solvation = 36.409077 kcal Electronic energy + Delta-G solvation = -21501.058344 eV Core-core repulsion = 18108.893934 eV Total energy + Delta-G solvation = -3392.164409 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 325.071 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.14861 -37.44000 -37.06144 -36.55710 -34.10160 -33.64323 -32.55262 -31.04234 -28.88568 -26.83523 -25.26164 -24.33514 -22.89887 -22.63337 -21.06964 -20.49118 -18.67193 -17.83803 -16.79245 -16.39697 -16.00935 -15.84245 -15.29570 -14.76470 -14.66910 -14.58265 -14.31131 -14.19048 -13.59554 -13.20778 -12.74187 -12.42738 -12.38075 -12.00052 -11.89684 -11.69107 -11.53476 -11.43810 -11.15888 -11.07102 -11.06528 -10.91511 -10.81727 -10.60714 -9.94971 -9.62327 -9.42331 -9.34563 -9.17586 -8.71497 -8.42746 -7.92983 -6.07138 -4.10494 0.22126 0.75565 0.98248 1.44262 1.57302 1.85584 2.95193 3.26410 3.34221 3.37288 3.51101 4.02783 4.26522 4.39770 4.40714 4.58371 4.69753 4.86892 4.88935 5.24098 5.28949 5.38361 5.45504 5.50113 5.58486 5.64732 5.66421 5.80076 5.94022 6.03231 6.40952 6.47218 6.51901 6.86587 6.96064 7.29726 7.56882 7.68152 7.90881 7.92597 8.31511 8.96123 9.54125 11.04109 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.011814 B = 0.002832 C = 0.002306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2369.560856 B = 9885.772474 C =12141.038151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.052 4.052 3 C -0.180 4.180 4 C -0.086 4.086 5 C -0.237 4.237 6 C 0.129 3.871 7 N -0.531 5.531 8 C 0.429 3.571 9 Cl 0.028 6.972 10 N -0.570 5.570 11 C 0.505 3.495 12 N -0.683 5.683 13 C 0.119 3.881 14 C -0.123 4.123 15 C 0.025 3.975 16 C -0.524 4.524 17 H 0.056 0.944 18 C 0.057 3.943 19 N -0.892 5.892 20 Si 0.893 3.107 21 H -0.273 1.273 22 H -0.283 1.283 23 H -0.284 1.284 24 S 0.169 5.831 25 H 0.060 0.940 26 H 0.058 0.942 27 H 0.063 0.937 28 H 0.086 0.914 29 H 0.077 0.923 30 H 0.147 0.853 31 H 0.413 0.587 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.020 0.980 37 H 0.020 0.980 38 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.105 -13.157 -21.328 25.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.091 4.091 3 C -0.296 4.296 4 C -0.116 4.116 5 C -0.256 4.256 6 C -0.120 4.120 7 N -0.257 5.257 8 C 0.130 3.870 9 Cl 0.056 6.944 10 N -0.301 5.301 11 C 0.251 3.749 12 N -0.311 5.311 13 C -0.004 4.004 14 C -0.161 4.161 15 C -0.012 4.012 16 C -0.562 4.562 17 H 0.074 0.926 18 C -0.144 4.144 19 N -0.531 5.531 20 Si 0.721 3.279 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.210 1.210 24 S 0.428 5.572 25 H 0.079 0.921 26 H 0.077 0.923 27 H 0.082 0.918 28 H 0.104 0.896 29 H 0.095 0.905 30 H 0.164 0.836 31 H 0.251 0.749 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.038 0.962 37 H 0.038 0.962 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.758 -12.201 -22.975 26.445 hybrid contribution -0.214 -0.601 2.891 2.960 sum -4.971 -12.802 -20.084 24.331 Atomic orbital electron populations 1.21812 0.94046 1.02203 1.02736 1.20144 0.96375 0.88926 1.03662 1.23948 1.08507 1.01315 0.95839 1.20388 1.00553 0.90947 0.99699 1.20032 1.14415 0.97094 0.94046 1.23405 0.98348 0.96499 0.93762 1.67387 1.20337 1.00079 1.37847 1.22306 0.91245 0.89127 0.84316 1.98434 1.86609 1.21054 1.88312 1.67243 1.25995 1.21709 1.15152 1.18179 0.84787 0.86188 0.85703 1.45083 1.66878 1.18193 1.00936 1.21861 1.01024 0.89033 0.88440 1.21928 1.01045 1.01426 0.91663 1.19015 0.97121 0.92584 0.92493 1.21219 1.44616 0.99356 0.90997 0.92608 1.25029 0.95170 0.94901 0.99330 1.69974 1.44979 1.06689 1.31497 0.86527 0.77804 0.78864 0.84747 1.19757 1.20957 1.20965 1.84142 1.67320 0.99916 1.05839 0.92100 0.92304 0.91838 0.89570 0.90450 0.83551 0.74928 0.91052 0.91046 0.92634 0.92626 0.96174 0.96171 0.92920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 9.89 37.16 0.37 -0.46 16 2 C -0.05 -0.30 6.37 -27.88 -0.18 -0.48 16 3 C -0.18 -1.55 5.64 -36.21 -0.20 -1.76 16 4 C -0.09 -0.84 9.85 -38.77 -0.38 -1.22 16 5 C -0.24 -3.08 6.08 -105.24 -0.64 -3.72 16 6 C 0.13 1.75 7.69 -16.09 -0.12 1.62 16 7 N -0.53 -8.02 10.43 -10.38 -0.11 -8.13 16 8 C 0.43 6.62 8.17 -92.14 -0.75 5.87 16 9 Cl 0.03 0.37 29.26 -51.86 -1.52 -1.14 16 10 N -0.57 -9.22 9.62 -10.51 -0.10 -9.32 16 11 C 0.51 7.38 7.57 -154.57 -1.17 6.21 16 12 N -0.68 -9.24 5.69 -59.82 -0.34 -9.58 16 13 C 0.12 1.93 5.72 -4.04 -0.02 1.90 16 14 C -0.12 -2.26 5.27 -26.73 -0.14 -2.40 16 15 C 0.03 0.62 4.97 -27.89 -0.14 0.49 16 16 C -0.52 -14.27 9.11 -34.44 -0.31 -14.58 16 17 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 18 C 0.06 1.61 5.46 -17.81 -0.10 1.51 16 19 N -0.89 -26.34 13.29 55.43 0.74 -25.60 16 20 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 21 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 24 S 0.17 1.68 23.20 -107.50 -2.49 -0.81 16 25 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 26 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.15 1.10 7.69 -52.49 -0.40 0.70 16 31 H 0.41 4.54 7.81 -40.82 -0.32 4.22 16 32 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 35 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 36 H 0.02 0.52 8.14 -51.92 -0.42 0.10 16 37 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 355.24 15.07 5.35 5.35 Total: -1.00 -30.84 355.24 -12.20 -43.04 By element: Atomic # 1 Polarization: 2.01 SS G_CDS: -4.91 Total: -2.90 kcal Atomic # 6 Polarization: -3.22 SS G_CDS: -3.80 Total: -7.02 kcal Atomic # 7 Polarization: -52.82 SS G_CDS: 0.19 Total: -52.63 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 16 Polarization: 1.68 SS G_CDS: -2.49 Total: -0.81 kcal Atomic # 17 Polarization: 0.37 SS G_CDS: -1.52 Total: -1.14 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -30.84 -12.20 -43.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168428242.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.452 kcal (2) G-P(sol) polarization free energy of solvation -30.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.043 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds