Wall clock time and date at job start Tue Mar 31 2020 14:11:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46912 * 2 1 4 4 C 1.31865 * 124.30415 * 90.00190 * 3 2 1 5 5 C 1.45095 * 114.81396 * 179.97438 * 4 3 2 6 6 C 1.39741 * 111.99484 * 0.02562 * 5 4 3 7 7 N 1.33908 * 119.12331 * 179.97438 * 6 5 4 8 8 C 1.31413 * 121.02786 * 0.02562 * 7 6 5 9 9 Cl 1.73597 * 118.92680 * 180.02562 * 8 7 6 10 10 N 1.32188 * 122.14195 * 0.02562 * 8 7 6 11 11 C 1.32467 * 121.17836 * 359.95700 * 10 8 7 12 12 N 1.38327 * 120.51933 * 180.02562 * 11 10 8 13 13 C 1.46502 * 119.99972 * 359.97438 * 12 11 10 14 14 C 1.52997 * 109.47199 * 180.02562 * 13 12 11 15 15 C 1.52996 * 109.47176 * 180.02562 * 14 13 12 16 16 C 1.50699 * 109.47085 * 180.02562 * 15 14 13 17 17 H 1.08002 * 120.00134 * 359.97438 * 16 15 14 18 18 C 1.37884 * 120.00143 * 180.02562 * 16 15 14 19 19 N 1.31519 * 119.99498 * 359.97438 * 18 16 15 20 20 Si 1.86793 * 120.00319 * 179.97438 * 18 16 15 21 21 H 1.48509 * 109.46941 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47002 * 119.99497 * 20 18 16 23 23 H 1.48496 * 109.47212 * 240.00258 * 20 18 16 24 24 S 1.75355 * 124.30148 * 269.70501 * 3 2 1 25 25 H 1.09001 * 109.47194 * 299.99742 * 1 2 3 26 26 H 1.08992 * 109.47399 * 59.99914 * 1 2 3 27 27 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47398 * 120.00078 * 2 1 3 29 29 H 1.09001 * 109.47194 * 240.00258 * 2 1 3 30 30 H 1.07997 * 122.59165 * 359.97438 * 4 3 2 31 31 H 0.97000 * 119.99907 * 180.02562 * 12 11 10 32 32 H 1.08998 * 109.46973 * 300.00227 * 13 12 11 33 33 H 1.09000 * 109.46754 * 60.00255 * 13 12 11 34 34 H 1.09003 * 109.47164 * 300.00692 * 14 13 12 35 35 H 1.09000 * 109.47246 * 59.99893 * 14 13 12 36 36 H 1.09007 * 109.46927 * 300.00132 * 15 14 13 37 37 H 1.09000 * 109.47360 * 59.99669 * 15 14 13 38 38 H 0.97001 * 119.99395 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2800 2.1215 1.0893 5 6 2.7576 3.4706 0.8500 6 6 2.8582 3.7559 -0.5142 7 7 3.2859 4.9657 -0.8972 8 6 3.6101 5.8811 -0.0118 9 17 4.1574 7.4315 -0.5690 10 7 3.5332 5.6598 1.2891 11 6 3.1207 4.4936 1.7631 12 7 3.0448 4.2770 3.1272 13 6 3.4228 5.3414 4.0601 14 6 3.2489 4.8458 5.4970 15 6 3.6430 5.9577 6.4713 16 6 3.4722 5.4692 7.8867 17 1 3.1176 4.4662 8.0727 18 6 3.7677 6.3032 8.9442 19 7 4.1991 7.5248 8.7176 20 14 3.5554 5.6981 10.6986 21 1 3.0601 4.2981 10.6828 22 1 4.8616 5.7536 11.4028 23 1 2.5750 6.5614 11.4048 24 16 2.3687 2.3501 -1.4486 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 2.1384 1.7221 2.0826 31 1 2.7421 3.4200 3.4660 32 1 4.4645 5.6166 3.8946 33 1 2.7867 6.2112 3.8958 34 1 2.2073 4.5702 5.6628 35 1 3.8852 3.9761 5.6610 36 1 4.6845 6.2335 6.3056 37 1 3.0064 6.8271 6.3072 38 1 4.4073 8.1114 9.4615 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168428242.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:13 Heat of formation + Delta-G solvation = 19.810820 kcal Electronic energy + Delta-G solvation = -21501.778098 eV Core-core repulsion = 18108.893934 eV Total energy + Delta-G solvation = -3392.884164 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 325.071 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.18652 -38.46732 -38.11399 -37.54734 -35.80285 -34.48104 -34.02744 -32.47488 -29.87918 -28.41301 -26.27790 -25.53870 -24.13554 -23.69172 -22.25268 -21.71704 -19.69177 -18.98336 -18.40110 -17.59115 -17.04410 -16.97357 -16.54485 -16.25539 -16.13199 -15.65446 -15.21635 -14.80403 -14.31590 -14.30424 -14.18270 -14.00990 -13.71286 -13.23653 -12.97875 -12.64306 -12.62146 -12.59063 -12.51049 -12.39362 -12.31428 -12.01339 -11.98104 -11.65205 -11.62295 -11.51295 -11.19163 -10.56042 -10.47469 -10.44216 -9.59659 -8.90687 -8.19806 -6.30879 -0.75675 -0.15222 -0.08756 0.41281 0.77756 1.03100 1.41570 1.42037 1.54689 1.84090 2.41854 2.43592 3.13693 3.14474 3.22095 3.49358 3.69990 4.09729 4.12055 4.20386 4.27630 4.45514 4.52207 4.53883 4.73684 4.83177 4.93264 5.04247 5.05231 5.11857 5.15507 5.29110 5.37758 5.43718 5.50818 5.70604 5.75265 5.84395 6.22548 6.27664 6.85958 6.87335 7.38835 8.92380 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.011814 B = 0.002832 C = 0.002306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2369.560856 B = 9885.772474 C =12141.038151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.052 4.052 3 C -0.161 4.161 4 C -0.100 4.100 5 C -0.231 4.231 6 C 0.091 3.909 7 N -0.539 5.539 8 C 0.410 3.590 9 Cl 0.034 6.966 10 N -0.596 5.596 11 C 0.492 3.508 12 N -0.674 5.674 13 C 0.138 3.862 14 C -0.103 4.103 15 C 0.026 3.974 16 C -0.540 4.540 17 H 0.066 0.934 18 C -0.003 4.003 19 N -0.934 5.934 20 Si 0.965 3.035 21 H -0.258 1.258 22 H -0.281 1.281 23 H -0.281 1.281 24 S 0.201 5.799 25 H 0.055 0.945 26 H 0.052 0.948 27 H 0.079 0.921 28 H 0.104 0.896 29 H 0.091 0.909 30 H 0.173 0.827 31 H 0.427 0.573 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.068 0.932 35 H 0.068 0.932 36 H -0.007 1.007 37 H -0.007 1.007 38 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.206 -16.480 -21.336 27.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.091 4.091 3 C -0.278 4.278 4 C -0.129 4.129 5 C -0.250 4.250 6 C -0.157 4.157 7 N -0.265 5.265 8 C 0.111 3.889 9 Cl 0.062 6.938 10 N -0.328 5.328 11 C 0.239 3.761 12 N -0.305 5.305 13 C 0.014 3.986 14 C -0.141 4.141 15 C -0.012 4.012 16 C -0.578 4.578 17 H 0.084 0.916 18 C -0.200 4.200 19 N -0.575 5.575 20 Si 0.790 3.210 21 H -0.182 1.182 22 H -0.207 1.207 23 H -0.207 1.207 24 S 0.461 5.539 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.097 0.903 28 H 0.122 0.878 29 H 0.109 0.891 30 H 0.190 0.810 31 H 0.267 0.733 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.012 0.988 37 H 0.012 0.988 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.875 -15.567 -23.024 28.407 hybrid contribution 0.092 0.343 2.762 2.785 sum -5.783 -15.224 -20.261 25.995 Atomic orbital electron populations 1.21821 0.93595 1.03143 1.02250 1.20325 0.96588 0.86951 1.05263 1.24434 1.06245 1.02266 0.94822 1.20589 1.01371 0.89561 1.01399 1.20268 1.13376 0.97978 0.93403 1.24002 0.99436 0.97043 0.95207 1.67414 1.20343 1.00768 1.37992 1.22439 0.92330 0.89777 0.84354 1.98420 1.86587 1.20616 1.88194 1.67185 1.26935 1.22920 1.15775 1.18346 0.85247 0.86493 0.86010 1.44719 1.67421 1.18080 1.00267 1.21372 0.99975 0.89334 0.87885 1.21615 1.01822 0.99433 0.91267 1.18912 0.95015 0.93735 0.93534 1.21709 1.43992 0.99798 0.92271 0.91563 1.25999 0.94872 0.95010 1.04162 1.70116 1.46298 1.08137 1.32911 0.85398 0.77745 0.78926 0.78973 1.18153 1.20660 1.20674 1.84071 1.65950 0.97977 1.05942 0.92599 0.92837 0.90250 0.87770 0.89059 0.80988 0.73266 0.92431 0.92437 0.91355 0.91334 0.98831 0.98832 0.92841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.89 71.98 0.71 -0.44 16 2 C -0.05 -0.41 6.37 29.85 0.19 -0.22 16 3 C -0.16 -2.29 5.64 24.87 0.14 -2.15 16 4 C -0.10 -1.69 9.85 23.22 0.23 -1.46 16 5 C -0.23 -5.74 6.08 -20.26 -0.12 -5.86 16 6 C 0.09 2.39 7.69 84.74 0.65 3.05 16 7 N -0.54 -16.45 10.43 -186.76 -1.95 -18.40 16 8 C 0.41 13.00 8.17 180.88 1.48 14.48 16 9 Cl 0.03 0.94 29.26 -2.72 -0.08 0.86 16 10 N -0.60 -19.77 9.62 -187.15 -1.80 -21.57 16 11 C 0.49 14.27 7.57 133.95 1.01 15.29 16 12 N -0.67 -17.70 5.69 -343.17 -1.95 -19.65 16 13 C 0.14 4.52 5.72 86.38 0.49 5.02 16 14 C -0.10 -3.76 5.27 30.59 0.16 -3.60 16 15 C 0.03 1.30 4.97 29.85 0.15 1.44 16 16 C -0.54 -29.43 9.11 25.60 0.23 -29.19 16 17 H 0.07 3.39 7.74 -2.91 -0.02 3.37 16 18 C 0.00 -0.15 5.46 84.66 0.46 0.31 16 19 N -0.93 -56.33 13.29 21.45 0.28 -56.04 16 20 Si 0.96 43.15 29.54 68.60 2.03 45.17 16 21 H -0.26 -10.79 7.11 99.48 0.71 -10.09 16 22 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 23 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 24 S 0.20 3.60 23.20 -56.49 -1.31 2.29 16 25 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 26 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 27 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 28 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.17 1.97 7.69 -2.91 -0.02 1.94 16 31 H 0.43 8.51 7.81 -92.71 -0.72 7.79 16 32 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 33 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 35 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 36 H -0.01 -0.37 8.14 -2.38 -0.02 -0.39 16 37 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 38 H 0.26 14.90 8.31 -92.71 -0.77 14.12 16 Total: -1.00 -68.01 355.24 1.38 -66.63 By element: Atomic # 1 Polarization: 3.69 SS G_CDS: 0.37 Total: 4.06 kcal Atomic # 6 Polarization: -9.14 SS G_CDS: 5.79 Total: -3.34 kcal Atomic # 7 Polarization: -110.25 SS G_CDS: -5.41 Total: -115.67 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.17 kcal Atomic # 16 Polarization: 3.60 SS G_CDS: -1.31 Total: 2.29 kcal Atomic # 17 Polarization: 0.94 SS G_CDS: -0.08 Total: 0.86 kcal Total: -68.01 1.38 -66.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168428242.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.443 kcal (2) G-P(sol) polarization free energy of solvation -68.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds