Wall clock time and date at job start Tue Mar 31 2020 14:39:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.47101 * 2 1 4 4 C 1.53001 * 109.46799 * 240.00203 * 2 1 3 5 5 C 1.53002 * 109.47119 * 174.99796 * 4 2 1 6 6 C 1.50694 * 109.47479 * 179.97438 * 5 4 2 7 7 H 1.08001 * 120.00230 * 0.02562 * 6 5 4 8 8 C 1.37873 * 120.00381 * 180.02562 * 6 5 4 9 9 N 1.31516 * 119.99720 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 120.00530 * 180.02562 * 8 6 5 11 11 H 1.48505 * 109.46897 * 59.99839 * 10 8 6 12 12 H 1.48502 * 109.47741 * 180.02562 * 10 8 6 13 13 H 1.48507 * 109.47356 * 300.00592 * 10 8 6 14 14 N 1.46890 * 109.47191 * 120.00596 * 2 1 3 15 15 C 1.46902 * 110.99891 * 274.99867 * 14 2 1 16 16 C 1.53002 * 109.47120 * 179.97438 * 15 14 2 17 17 C 1.50703 * 109.47098 * 180.02562 * 16 15 14 18 18 C 1.38238 * 120.00825 * 100.00268 * 17 16 15 19 19 C 1.38220 * 120.00764 * 180.27924 * 18 17 16 20 20 C 1.38259 * 120.02067 * 359.48336 * 19 18 17 21 21 C 1.38191 * 120.01019 * 0.51242 * 20 19 18 22 22 C 1.38305 * 119.99878 * 280.01897 * 17 16 15 23 23 Br 1.89094 * 120.01387 * 359.95958 * 22 17 16 24 24 H 1.08994 * 109.47210 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.47153 * 300.00051 * 1 2 3 26 26 H 1.09004 * 109.46693 * 59.99247 * 1 2 3 27 27 H 1.08991 * 109.47464 * 295.00179 * 4 2 1 28 28 H 1.09005 * 109.47458 * 55.00248 * 4 2 1 29 29 H 1.08999 * 109.47568 * 300.00578 * 5 4 2 30 30 H 1.09005 * 109.46587 * 59.99919 * 5 4 2 31 31 H 0.97005 * 120.00263 * 179.97438 * 9 8 6 32 32 H 1.00906 * 111.00304 * 38.94914 * 14 2 1 33 33 H 1.08999 * 109.47005 * 60.00308 * 15 14 2 34 34 H 1.08994 * 109.47071 * 299.99634 * 15 14 2 35 35 H 1.09000 * 109.47242 * 59.99777 * 16 15 14 36 36 H 1.09007 * 109.47302 * 300.00086 * 16 15 14 37 37 H 1.08002 * 119.99176 * 359.97438 * 18 17 16 38 38 H 1.07997 * 119.98655 * 179.74668 * 19 18 17 39 39 H 1.08001 * 119.99321 * 180.27790 * 20 19 18 40 40 H 1.08002 * 120.00579 * 179.76318 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5648 -0.6133 -1.3138 6 6 4.0672 -1.3241 -2.5439 7 1 3.3688 -1.8045 -3.2131 8 6 5.4185 -1.3613 -2.8152 9 7 6.2691 -0.7767 -2.0001 10 14 6.0412 -2.2418 -4.3404 11 1 5.4495 -1.6153 -5.5499 12 1 7.5213 -2.1382 -4.4023 13 1 5.6476 -3.6726 -4.2814 14 7 2.0197 -0.6926 1.1993 15 6 2.0825 0.2224 2.3468 16 6 2.5951 -0.5334 3.5744 17 6 2.6590 0.4051 4.7517 18 6 1.6516 0.3961 5.6984 19 6 1.7073 1.2610 6.7752 20 6 2.7757 2.1278 6.9117 21 6 3.7832 2.1374 5.9658 22 6 3.7253 1.2757 4.8850 23 35 5.1038 1.2880 3.5907 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5140 -0.8900 27 1 1.7516 -1.7714 -1.2057 28 1 1.6054 -0.2617 -2.1371 29 1 3.8533 0.4370 -1.3574 30 1 3.9994 -1.0728 -0.4261 31 1 7.2198 -0.8031 -2.1907 32 1 1.4496 -1.4980 1.4099 33 1 1.0871 0.6161 2.5525 34 1 2.7589 1.0460 2.1182 35 1 3.5904 -0.9275 3.3690 36 1 1.9184 -1.3569 3.8028 37 1 0.8186 -0.2833 5.5940 38 1 0.9181 1.2565 7.5124 39 1 2.8210 2.8003 7.7556 40 1 4.6158 2.8173 6.0705 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172479861.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:17 Heat of formation + Delta-G solvation = 4.062728 kcal Electronic energy + Delta-G solvation = -19160.433986 eV Core-core repulsion = 16213.226720 eV Total energy + Delta-G solvation = -2947.207266 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 325.074 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.62111 -37.26698 -34.24877 -32.86808 -32.24012 -30.97284 -29.42830 -28.97405 -27.05881 -24.98889 -22.92075 -22.62843 -21.22772 -20.99000 -19.63665 -16.85044 -16.05212 -15.91448 -15.52333 -15.05721 -14.65865 -14.34135 -13.99925 -13.61791 -13.40636 -13.21290 -12.74966 -12.58662 -12.32098 -11.99343 -11.79362 -11.47503 -11.42331 -11.19276 -11.06570 -11.02656 -10.75899 -10.58806 -10.42285 -10.13946 -9.93843 -9.56569 -9.14365 -9.03982 -8.84976 -8.70460 -8.17546 -7.80403 -5.82873 -3.83881 0.94153 1.09486 1.72225 3.41695 3.42570 3.45806 3.48336 4.37279 4.58376 4.60312 4.70975 4.88726 5.06289 5.18011 5.29900 5.35418 5.42430 5.49101 5.52270 5.63702 5.67007 5.74334 5.75441 5.97899 6.05743 6.15416 6.20102 6.23788 6.32936 6.39716 6.48815 6.63546 6.74151 6.95414 7.37703 7.57084 7.88417 7.90950 8.14957 8.30893 8.63655 9.25187 9.78214 11.27962 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.016659 B = 0.003703 C = 0.003134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.388285 B = 7559.103044 C = 8931.320127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.085 3.915 3 H 0.071 0.929 4 C -0.098 4.098 5 C 0.030 3.970 6 C -0.518 4.518 7 H 0.049 0.951 8 C 0.057 3.943 9 N -0.894 5.894 10 Si 0.886 3.114 11 H -0.279 1.279 12 H -0.289 1.289 13 H -0.278 1.278 14 N -0.668 5.668 15 C 0.068 3.932 16 C -0.091 4.091 17 C -0.046 4.046 18 C -0.115 4.115 19 C -0.107 4.107 20 C -0.125 4.125 21 C -0.091 4.091 22 C -0.094 4.094 23 Br -0.025 7.025 24 H 0.053 0.947 25 H 0.043 0.957 26 H 0.058 0.942 27 H 0.046 0.954 28 H 0.045 0.955 29 H 0.006 0.994 30 H 0.034 0.966 31 H 0.258 0.742 32 H 0.333 0.667 33 H 0.020 0.980 34 H 0.078 0.922 35 H 0.096 0.904 36 H 0.072 0.928 37 H 0.128 0.872 38 H 0.125 0.875 39 H 0.127 0.873 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.094 5.910 20.255 22.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.025 4.025 3 H 0.089 0.911 4 C -0.136 4.136 5 C -0.007 4.007 6 C -0.557 4.557 7 H 0.068 0.932 8 C -0.144 4.144 9 N -0.534 5.534 10 Si 0.714 3.286 11 H -0.205 1.205 12 H -0.214 1.214 13 H -0.204 1.204 14 N -0.298 5.298 15 C -0.062 4.062 16 C -0.128 4.128 17 C -0.049 4.049 18 C -0.134 4.134 19 C -0.125 4.125 20 C -0.143 4.143 21 C -0.111 4.111 22 C -0.174 4.174 23 Br 0.061 6.939 24 H 0.072 0.928 25 H 0.062 0.938 26 H 0.077 0.923 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.024 0.976 30 H 0.052 0.948 31 H 0.067 0.933 32 H 0.150 0.850 33 H 0.038 0.962 34 H 0.097 0.903 35 H 0.114 0.886 36 H 0.091 0.909 37 H 0.146 0.854 38 H 0.143 0.857 39 H 0.145 0.855 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -7.701 6.035 19.609 21.914 hybrid contribution -0.864 -0.314 -0.279 0.961 sum -8.566 5.721 19.330 21.903 Atomic orbital electron populations 1.22537 0.98743 1.01449 1.01174 1.21720 0.90782 0.98393 0.91581 0.91091 1.21623 1.00651 0.98305 0.92984 1.18983 0.88271 0.96435 0.96994 1.21320 0.91810 1.34035 1.08513 0.93234 1.24987 0.97144 0.95811 0.96435 1.69975 1.02117 1.44374 1.36898 0.86767 0.77563 0.80311 0.83943 1.20468 1.21437 1.20396 1.60472 1.57539 1.08906 1.02875 1.21896 0.98596 0.96075 0.89593 1.20779 1.04458 0.96345 0.91263 1.19869 0.92849 0.95667 0.96488 1.21085 0.98322 0.99701 0.94253 1.21241 0.98099 0.95451 0.97747 1.21123 0.94336 0.99699 0.99181 1.21147 0.99263 0.97714 0.92979 1.22006 0.96700 1.01437 0.97281 1.96917 1.46163 1.98159 1.52683 0.92811 0.93837 0.92320 0.93519 0.93648 0.97563 0.94811 0.93276 0.84968 0.96185 0.90340 0.88586 0.90901 0.85372 0.85657 0.85461 0.85133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.49 9.16 37.16 0.34 -2.15 16 2 C 0.08 1.46 2.59 -67.71 -0.18 1.29 16 3 H 0.07 1.30 7.80 -51.93 -0.40 0.90 16 4 C -0.10 -2.06 4.83 -26.73 -0.13 -2.19 16 5 C 0.03 0.81 4.86 -27.89 -0.14 0.67 16 6 C -0.52 -15.23 9.11 -34.44 -0.31 -15.55 16 7 H 0.05 1.41 7.74 -52.49 -0.41 1.01 16 8 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 9 N -0.89 -27.81 13.29 55.43 0.74 -27.07 16 10 Si 0.89 22.39 29.54 -169.99 -5.02 17.37 16 11 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 13 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 14 N -0.67 -10.90 5.70 -106.73 -0.61 -11.51 16 15 C 0.07 0.97 5.39 -3.82 -0.02 0.95 16 16 C -0.09 -1.16 5.01 -27.88 -0.14 -1.30 16 17 C -0.05 -0.55 5.14 -104.60 -0.54 -1.09 16 18 C -0.11 -1.13 9.67 -39.59 -0.38 -1.51 16 19 C -0.11 -0.91 10.05 -39.58 -0.40 -1.31 16 20 C -0.12 -1.09 10.05 -39.59 -0.40 -1.48 16 21 C -0.09 -0.95 9.79 -39.56 -0.39 -1.34 16 22 C -0.09 -1.18 6.22 -39.52 -0.25 -1.42 16 23 Br -0.03 -0.37 30.85 -68.01 -2.10 -2.47 16 24 H 0.05 0.70 8.13 -51.93 -0.42 0.28 16 25 H 0.04 0.54 7.45 -51.93 -0.39 0.16 16 26 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 27 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 28 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 30 H 0.03 0.97 7.75 -51.93 -0.40 0.57 16 31 H 0.26 7.60 8.31 -40.82 -0.34 7.27 16 32 H 0.33 4.82 8.47 -39.29 -0.33 4.49 16 33 H 0.02 0.27 7.44 -51.93 -0.39 -0.12 16 34 H 0.08 1.27 6.90 -51.93 -0.36 0.91 16 35 H 0.10 1.42 7.15 -51.93 -0.37 1.05 16 36 H 0.07 0.80 8.00 -51.93 -0.42 0.39 16 37 H 0.13 1.02 8.04 -52.49 -0.42 0.60 16 38 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 39 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 40 H 0.13 1.18 8.06 -52.49 -0.42 0.75 16 LS Contribution 347.93 15.07 5.24 5.24 Total: -1.00 -31.81 347.93 -11.17 -42.98 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: -6.40 Total: 0.30 kcal Atomic # 6 Polarization: -21.82 SS G_CDS: -3.02 Total: -24.83 kcal Atomic # 7 Polarization: -38.71 SS G_CDS: 0.13 Total: -38.58 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Atomic # 35 Polarization: -0.37 SS G_CDS: -2.10 Total: -2.47 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.81 -11.17 -42.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172479861.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.043 kcal (2) G-P(sol) polarization free energy of solvation -31.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.981 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds