Wall clock time and date at job start Tue Mar 31 2020 14:39:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46661 * 2 1 4 4 C 1.52992 * 109.47705 * 240.00190 * 2 1 3 5 5 C 1.52997 * 109.47482 * 174.99884 * 4 2 1 6 6 C 1.50701 * 109.47212 * 179.97438 * 5 4 2 7 7 H 1.07998 * 120.00129 * 0.02562 * 6 5 4 8 8 C 1.37880 * 119.99861 * 179.97438 * 6 5 4 9 9 N 1.31510 * 119.99913 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 119.99734 * 180.02562 * 8 6 5 11 11 H 1.48506 * 109.47294 * 60.00559 * 10 8 6 12 12 H 1.48503 * 109.46954 * 180.02562 * 10 8 6 13 13 H 1.48503 * 109.47431 * 300.00157 * 10 8 6 14 14 N 1.46898 * 109.47061 * 119.99908 * 2 1 3 15 15 C 1.46905 * 110.99865 * 275.00665 * 14 2 1 16 16 H 1.09002 * 109.47432 * 34.99741 * 15 14 2 17 17 C 1.53005 * 109.46820 * 274.99735 * 15 14 2 18 18 C 1.50703 * 109.47266 * 155.00135 * 15 14 2 19 19 C 1.38243 * 119.98976 * 39.71984 * 18 15 14 20 20 C 1.38212 * 120.01106 * 179.77067 * 19 18 15 21 21 C 1.38325 * 119.98788 * 0.50615 * 20 19 18 22 22 Br 1.89099 * 120.00945 * 179.76824 * 21 20 19 23 23 C 1.38325 * 119.98337 * 359.74706 * 21 20 19 24 24 C 1.38228 * 119.98467 * 359.97438 * 23 21 20 25 25 H 1.09001 * 109.46974 * 60.00366 * 1 2 3 26 26 H 1.09000 * 109.46929 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47812 * 299.99528 * 1 2 3 28 28 H 1.09002 * 109.47103 * 54.99637 * 4 2 1 29 29 H 1.08998 * 109.46862 * 295.00449 * 4 2 1 30 30 H 1.09002 * 109.47153 * 59.99783 * 5 4 2 31 31 H 1.09001 * 109.46832 * 299.99974 * 5 4 2 32 32 H 0.97002 * 119.99768 * 179.97438 * 9 8 6 33 33 H 1.00893 * 111.00068 * 151.05171 * 14 2 1 34 34 H 1.08997 * 109.47156 * 180.02562 * 17 15 14 35 35 H 1.09002 * 109.47122 * 300.00195 * 17 15 14 36 36 H 1.08996 * 109.46951 * 60.00242 * 17 15 14 37 37 H 1.08008 * 119.99542 * 0.02562 * 19 18 15 38 38 H 1.08000 * 120.00839 * 180.23385 * 20 19 18 39 39 H 1.07993 * 120.01107 * 179.97438 * 23 21 20 40 40 H 1.07997 * 119.99130 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2492 5 6 3.5649 -0.6131 -1.3136 6 6 4.0674 -1.3240 -2.5437 7 1 3.3690 -1.8044 -3.2129 8 6 5.4187 -1.3602 -2.8154 9 7 6.2690 -0.7748 -2.0007 10 14 6.0414 -2.2408 -4.3405 11 1 5.4490 -1.6150 -5.5500 12 1 7.5214 -2.1360 -4.4030 13 1 5.6490 -3.6718 -4.2809 14 7 2.0196 -0.6925 1.1994 15 6 2.0823 0.2227 2.3469 16 1 1.2574 0.9330 2.2907 17 6 3.4109 0.9810 2.3225 18 6 1.9784 -0.5676 3.6259 19 6 2.6282 -1.7822 3.7424 20 6 2.5372 -2.5050 4.9169 21 6 1.7871 -2.0179 5.9722 22 35 1.6568 -3.0095 7.5771 23 6 1.1328 -0.8050 5.8534 24 6 1.2292 -0.0801 4.6804 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3635 0.5137 0.8900 28 1 1.6055 -0.2617 -2.1369 29 1 1.7517 -1.7714 -1.2056 30 1 3.9995 -1.0726 -0.4258 31 1 3.8532 0.4372 -1.3572 32 1 7.2197 -0.8005 -2.1917 33 1 2.9172 -1.1204 1.0288 34 1 3.4576 1.6597 3.1741 35 1 4.2358 0.2707 2.3787 36 1 3.4860 1.5526 1.3974 37 1 3.2105 -2.1644 2.9170 38 1 3.0479 -3.4522 5.0092 39 1 0.5468 -0.4245 6.6768 40 1 0.7188 0.8671 4.5877 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172481020.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:48 Heat of formation + Delta-G solvation = 2.669636 kcal Electronic energy + Delta-G solvation = -19411.139752 eV Core-core repulsion = 16463.872077 eV Total energy + Delta-G solvation = -2947.267675 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 325.074 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.66226 -37.44867 -34.26696 -32.78442 -31.52447 -31.09124 -29.59972 -28.71314 -27.73050 -25.14055 -23.36265 -22.83109 -21.47752 -20.34274 -19.56752 -16.91972 -16.31401 -15.84003 -15.34100 -14.86172 -14.56566 -14.47501 -13.73120 -13.52229 -13.40326 -13.05786 -12.84431 -12.52122 -12.46444 -12.10572 -11.72741 -11.60433 -11.42054 -11.24422 -11.08742 -10.91308 -10.81585 -10.68550 -10.51825 -10.39839 -10.30003 -9.79565 -9.30953 -9.07705 -9.04967 -8.59800 -8.38611 -8.04081 -6.03888 -4.05914 1.06338 1.28981 1.53719 3.31279 3.35838 3.38449 3.58421 4.41286 4.43379 4.74712 4.84593 4.87293 5.20030 5.30203 5.32428 5.40005 5.42899 5.53349 5.63869 5.71237 5.76223 5.86851 5.94243 5.97223 6.14511 6.16109 6.23633 6.32410 6.37520 6.45397 6.50335 6.63214 6.79102 6.87843 7.04325 7.44907 7.57573 7.75419 7.83213 7.95509 8.39084 9.00420 9.58495 11.07123 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.018766 B = 0.002642 C = 0.002453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.707936 B =10596.085765 C =11412.910307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.083 3.917 3 H 0.040 0.960 4 C -0.115 4.115 5 C 0.023 3.977 6 C -0.521 4.521 7 H 0.054 0.946 8 C 0.058 3.942 9 N -0.895 5.895 10 Si 0.891 3.109 11 H -0.277 1.277 12 H -0.288 1.288 13 H -0.277 1.277 14 N -0.679 5.679 15 C 0.118 3.882 16 H 0.084 0.916 17 C -0.177 4.177 18 C -0.040 4.040 19 C -0.090 4.090 20 C -0.091 4.091 21 C -0.098 4.098 22 Br -0.065 7.065 23 C -0.093 4.093 24 C -0.115 4.115 25 H 0.051 0.949 26 H 0.057 0.943 27 H 0.042 0.958 28 H 0.054 0.946 29 H 0.057 0.943 30 H 0.015 0.985 31 H 0.012 0.988 32 H 0.261 0.739 33 H 0.354 0.646 34 H 0.056 0.944 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.135 0.865 38 H 0.130 0.870 39 H 0.128 0.872 40 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.572 0.262 19.402 22.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.026 4.026 3 H 0.058 0.942 4 C -0.153 4.153 5 C -0.015 4.015 6 C -0.559 4.559 7 H 0.072 0.928 8 C -0.144 4.144 9 N -0.535 5.535 10 Si 0.719 3.281 11 H -0.203 1.203 12 H -0.213 1.213 13 H -0.202 1.202 14 N -0.314 5.314 15 C 0.008 3.992 16 H 0.102 0.898 17 C -0.236 4.236 18 C -0.041 4.041 19 C -0.109 4.109 20 C -0.111 4.111 21 C -0.177 4.177 22 Br 0.020 6.980 23 C -0.113 4.113 24 C -0.134 4.134 25 H 0.070 0.930 26 H 0.076 0.924 27 H 0.062 0.938 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.033 0.967 31 H 0.030 0.970 32 H 0.070 0.930 33 H 0.176 0.824 34 H 0.075 0.925 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.152 0.848 38 H 0.148 0.852 39 H 0.146 0.854 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -11.041 -0.334 20.173 23.000 hybrid contribution 1.285 0.273 -1.387 1.911 sum -9.756 -0.061 18.786 21.168 Atomic orbital electron populations 1.21805 0.95751 1.01769 1.00116 1.21603 0.94413 0.96252 0.90346 0.94204 1.21833 0.99698 0.99481 0.94287 1.19108 0.88703 0.96796 0.96844 1.21202 0.91933 1.34353 1.08397 0.92754 1.25010 0.97083 0.95579 0.96679 1.69940 1.02416 1.44037 1.37069 0.86673 0.77587 0.80293 0.83543 1.20286 1.21320 1.20211 1.60723 1.34802 1.31768 1.04082 1.20507 0.97605 0.92551 0.88579 0.89802 1.22478 0.97641 1.01146 1.02351 1.20052 0.94556 0.94665 0.94807 1.21054 0.98984 0.94069 0.96812 1.21121 0.97699 1.00103 0.92146 1.21699 1.05189 0.97543 0.93276 1.96671 1.97921 1.72929 1.30436 1.20987 0.98841 0.93199 0.98289 1.20991 0.99594 1.00119 0.92683 0.93017 0.92370 0.93847 0.92710 0.92457 0.96729 0.96981 0.92977 0.82388 0.92469 0.91796 0.91562 0.84764 0.85209 0.85421 0.85459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 9.40 37.16 0.35 -1.56 16 2 C 0.08 1.35 2.46 -67.72 -0.17 1.18 16 3 H 0.04 0.67 7.11 -51.93 -0.37 0.30 16 4 C -0.12 -2.27 4.74 -26.74 -0.13 -2.40 16 5 C 0.02 0.55 4.80 -27.88 -0.13 0.42 16 6 C -0.52 -14.37 9.11 -34.44 -0.31 -14.68 16 7 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 8 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 9 N -0.90 -26.17 13.29 55.43 0.74 -25.44 16 10 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 12 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 13 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 14 N -0.68 -10.48 5.50 -100.95 -0.56 -11.03 16 15 C 0.12 1.55 2.60 -68.86 -0.18 1.37 16 16 H 0.08 1.04 6.97 -51.93 -0.36 0.68 16 17 C -0.18 -2.40 9.13 37.16 0.34 -2.06 16 18 C -0.04 -0.50 4.96 -104.62 -0.52 -1.02 16 19 C -0.09 -1.16 9.32 -39.59 -0.37 -1.53 16 20 C -0.09 -1.09 9.79 -39.56 -0.39 -1.48 16 21 C -0.10 -1.13 6.22 -39.52 -0.25 -1.37 16 22 Br -0.06 -0.67 33.70 -68.01 -2.29 -2.96 16 23 C -0.09 -1.00 9.79 -39.55 -0.39 -1.39 16 24 C -0.11 -1.26 9.67 -39.59 -0.38 -1.64 16 25 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 26 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 27 H 0.04 0.55 7.43 -51.93 -0.39 0.16 16 28 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.01 0.37 6.43 -51.93 -0.33 0.03 16 31 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 33 H 0.35 6.08 5.56 -39.30 -0.22 5.86 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.93 8.13 -51.93 -0.42 0.51 16 36 H 0.07 0.98 7.43 -51.93 -0.39 0.59 16 37 H 0.13 1.78 7.24 -52.48 -0.38 1.40 16 38 H 0.13 1.39 8.06 -52.49 -0.42 0.96 16 39 H 0.13 1.13 8.06 -52.49 -0.42 0.70 16 40 H 0.13 1.14 8.04 -52.49 -0.42 0.71 16 LS Contribution 346.14 15.07 5.22 5.22 Total: -1.00 -28.39 346.14 -10.74 -39.12 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -6.20 Total: 3.34 kcal Atomic # 6 Polarization: -22.00 SS G_CDS: -2.62 Total: -24.62 kcal Atomic # 7 Polarization: -36.65 SS G_CDS: 0.18 Total: -36.47 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 35 Polarization: -0.67 SS G_CDS: -2.29 Total: -2.96 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -28.39 -10.74 -39.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172481020.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.793 kcal (2) G-P(sol) polarization free energy of solvation -28.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds