Wall clock time and date at job start Tue Mar 31 2020 14:39:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 5 5 C 1.52999 * 109.47451 * 184.99880 * 4 2 1 6 6 C 1.50699 * 109.47201 * 180.02562 * 5 4 2 7 7 H 1.08004 * 120.00035 * 0.02562 * 6 5 4 8 8 C 1.37875 * 120.00490 * 180.02562 * 6 5 4 9 9 N 1.31518 * 119.99296 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 120.00678 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.46800 * 0.02562 * 10 8 6 12 12 H 1.48502 * 109.47142 * 119.99825 * 10 8 6 13 13 H 1.48496 * 109.47300 * 240.00249 * 10 8 6 14 14 N 1.46894 * 109.47515 * 239.99762 * 2 1 3 15 15 C 1.46908 * 110.99837 * 84.99962 * 14 2 1 16 16 C 1.53000 * 109.46840 * 180.02562 * 15 14 2 17 17 C 1.50704 * 109.46831 * 180.02562 * 16 15 14 18 18 C 1.38241 * 119.98650 * 269.71986 * 17 16 15 19 19 C 1.38224 * 120.00857 * 179.76491 * 18 17 16 20 20 C 1.38326 * 119.98522 * 0.51669 * 19 18 17 21 21 Br 1.89102 * 120.00336 * 179.72084 * 20 19 18 22 22 C 1.38322 * 119.98426 * 359.73829 * 20 19 18 23 23 C 1.38226 * 119.98647 * 0.02562 * 22 20 19 24 24 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 26 26 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 27 27 H 1.08998 * 109.47565 * 305.00629 * 4 2 1 28 28 H 1.09000 * 109.46738 * 65.00110 * 4 2 1 29 29 H 1.08996 * 109.47443 * 300.00108 * 5 4 2 30 30 H 1.09000 * 109.46961 * 60.00367 * 5 4 2 31 31 H 0.97006 * 119.99913 * 180.02562 * 9 8 6 32 32 H 1.00898 * 111.00604 * 208.95432 * 14 2 1 33 33 H 1.08993 * 109.47111 * 300.00155 * 15 14 2 34 34 H 1.09002 * 109.46900 * 60.00465 * 15 14 2 35 35 H 1.09000 * 109.47419 * 299.99657 * 16 15 14 36 36 H 1.09002 * 109.47282 * 60.00347 * 16 15 14 37 37 H 1.07998 * 120.00010 * 0.02562 * 18 17 16 38 38 H 1.08001 * 120.00610 * 180.23495 * 19 18 17 39 39 H 1.08000 * 120.00374 * 179.97438 * 22 20 19 40 40 H 1.08001 * 119.98833 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.6132 1.3137 6 6 4.0672 -1.3241 2.5439 7 1 3.3688 -1.8052 3.2127 8 6 5.4184 -1.3604 2.8157 9 7 6.2688 -0.7742 2.0016 10 14 6.0411 -2.2410 4.3409 11 1 4.8912 -2.8133 5.0861 12 1 6.9636 -3.3334 3.9399 13 1 6.7635 -1.2767 5.2090 14 7 2.0197 -0.6925 -1.1993 15 6 2.0825 0.2226 -2.3468 16 6 2.5952 -0.5332 -3.5744 17 6 2.6602 0.4057 -4.7514 18 6 1.5672 0.5434 -5.5865 19 6 1.6247 1.4081 -6.6634 20 6 2.7798 2.1276 -6.9114 21 35 2.8616 3.3048 -8.3891 22 6 3.8750 1.9855 -6.0786 23 6 3.8148 1.1242 -4.9991 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 0.5139 0.8900 27 1 1.6054 -0.2617 2.1370 28 1 1.7517 -1.7714 1.2056 29 1 3.9995 -1.0728 0.4261 30 1 3.8532 0.4370 1.3574 31 1 7.2195 -0.8000 2.1926 32 1 2.9173 -1.1205 -1.0286 33 1 1.0872 0.6163 -2.5525 34 1 2.7589 1.0462 -2.1181 35 1 3.5905 -0.9272 -3.3690 36 1 1.9185 -1.3566 -3.8029 37 1 0.6669 -0.0215 -5.3952 38 1 0.7695 1.5185 -7.3137 39 1 4.7771 2.5468 -6.2722 40 1 4.6701 1.0130 -4.3490 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172481346.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:24 Heat of formation + Delta-G solvation = -2.923443 kcal Electronic energy + Delta-G solvation = -18729.802320 eV Core-core repulsion = 15782.292111 eV Total energy + Delta-G solvation = -2947.510209 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 325.074 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.64366 -37.33029 -34.42740 -33.03218 -31.73688 -31.27311 -30.12962 -29.12820 -26.90060 -25.08547 -23.04280 -22.77943 -21.35523 -20.92288 -19.49920 -16.82988 -16.44028 -15.90198 -15.51468 -15.11922 -14.93676 -14.52537 -13.92459 -13.70139 -13.46092 -13.27278 -12.95888 -12.53688 -12.33616 -12.16926 -11.67644 -11.59903 -11.51534 -11.20336 -11.15102 -10.98033 -10.94132 -10.74286 -10.53321 -10.48090 -10.22269 -9.78207 -9.29765 -9.24491 -9.04679 -8.73797 -8.38686 -8.02017 -6.03435 -4.05286 0.86571 1.09261 1.39088 3.29171 3.36917 3.38598 3.41203 4.38841 4.43877 4.53649 4.67987 4.93567 5.04636 5.14600 5.27249 5.32840 5.35068 5.44835 5.51121 5.71172 5.74414 5.77677 5.89270 5.96578 5.97869 6.04710 6.09952 6.21187 6.34351 6.44154 6.49747 6.53253 6.61614 6.89324 7.06145 7.47202 7.59451 7.77056 7.87527 7.96754 8.39939 9.01643 9.59144 11.07826 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.021966 B = 0.002115 C = 0.001977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.364304 B =13238.609901 C =14162.580205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.083 3.917 3 H 0.037 0.963 4 C -0.115 4.115 5 C 0.020 3.980 6 C -0.518 4.518 7 H 0.056 0.944 8 C 0.056 3.944 9 N -0.896 5.896 10 Si 0.891 3.109 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.284 1.284 14 N -0.688 5.688 15 C 0.067 3.933 16 C -0.085 4.085 17 C -0.055 4.055 18 C -0.111 4.111 19 C -0.091 4.091 20 C -0.098 4.098 21 Br -0.060 7.060 22 C -0.089 4.089 23 C -0.110 4.110 24 H 0.057 0.943 25 H 0.042 0.958 26 H 0.051 0.949 27 H 0.054 0.946 28 H 0.057 0.943 29 H 0.015 0.985 30 H 0.012 0.988 31 H 0.259 0.741 32 H 0.352 0.648 33 H 0.067 0.933 34 H 0.029 0.971 35 H 0.077 0.923 36 H 0.083 0.917 37 H 0.132 0.868 38 H 0.130 0.870 39 H 0.131 0.869 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.965 7.025 -22.183 24.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.027 4.027 3 H 0.055 0.945 4 C -0.153 4.153 5 C -0.017 4.017 6 C -0.556 4.556 7 H 0.074 0.926 8 C -0.145 4.145 9 N -0.536 5.536 10 Si 0.719 3.281 11 H -0.197 1.197 12 H -0.210 1.210 13 H -0.211 1.211 14 N -0.323 5.323 15 C -0.063 4.063 16 C -0.122 4.122 17 C -0.056 4.056 18 C -0.130 4.130 19 C -0.110 4.110 20 C -0.178 4.178 21 Br 0.025 6.975 22 C -0.108 4.108 23 C -0.129 4.129 24 H 0.076 0.924 25 H 0.062 0.938 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.033 0.967 30 H 0.030 0.970 31 H 0.069 0.931 32 H 0.174 0.826 33 H 0.085 0.915 34 H 0.048 0.952 35 H 0.096 0.904 36 H 0.102 0.898 37 H 0.150 0.850 38 H 0.148 0.852 39 H 0.149 0.851 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -9.366 7.250 -22.915 25.795 hybrid contribution 1.285 -0.072 1.326 1.848 sum -8.080 7.179 -21.589 24.144 Atomic orbital electron populations 1.21791 0.95782 1.01682 1.00155 1.21590 0.94485 0.96085 0.90520 0.94492 1.21835 0.99665 0.99467 0.94324 1.19129 0.88789 0.96834 0.96928 1.21279 0.91956 1.34082 1.08318 0.92609 1.25028 0.97104 0.95626 0.96730 1.69969 1.02322 1.44177 1.37084 0.86545 0.78862 0.79470 0.83195 1.19726 1.21004 1.21058 1.60604 1.34706 1.32526 1.04462 1.21882 1.00125 0.94047 0.90256 1.20678 1.03150 0.96852 0.91569 1.20111 0.93331 0.96303 0.95895 1.21114 0.98746 0.98701 0.94447 1.21087 0.96502 0.95586 0.97871 1.21750 0.97974 1.01189 0.96839 1.96698 1.98980 1.61495 1.40341 1.21121 0.97363 0.98231 0.94124 1.21198 0.98472 0.96071 0.97152 0.92369 0.93849 0.93040 0.92728 0.92432 0.96667 0.96994 0.93093 0.82615 0.91476 0.95237 0.90400 0.89813 0.84990 0.85179 0.85070 0.84807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 9.41 37.16 0.35 -1.61 16 2 C 0.08 1.41 2.65 -67.72 -0.18 1.23 16 3 H 0.04 0.66 7.80 -51.93 -0.40 0.26 16 4 C -0.12 -2.33 4.74 -26.73 -0.13 -2.46 16 5 C 0.02 0.51 4.80 -27.88 -0.13 0.37 16 6 C -0.52 -14.48 9.11 -34.44 -0.31 -14.79 16 7 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 8 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 9 N -0.90 -26.49 13.29 55.43 0.74 -25.75 16 10 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 11 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 13 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 14 N -0.69 -11.02 6.31 -106.73 -0.67 -11.69 16 15 C 0.07 0.90 5.47 -3.82 -0.02 0.88 16 16 C -0.08 -0.97 5.61 -27.88 -0.16 -1.13 16 17 C -0.06 -0.60 5.13 -104.62 -0.54 -1.13 16 18 C -0.11 -1.08 9.70 -39.59 -0.38 -1.47 16 19 C -0.09 -0.87 9.79 -39.55 -0.39 -1.25 16 20 C -0.10 -1.00 6.22 -39.52 -0.25 -1.25 16 21 Br -0.06 -0.56 33.70 -68.01 -2.29 -2.85 16 22 C -0.09 -0.91 9.79 -39.55 -0.39 -1.29 16 23 C -0.11 -1.18 9.70 -39.59 -0.38 -1.57 16 24 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.04 0.57 7.45 -51.93 -0.39 0.18 16 26 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.02 0.39 6.43 -51.93 -0.33 0.06 16 30 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 32 H 0.35 6.25 6.47 -39.29 -0.25 5.99 16 33 H 0.07 0.86 7.44 -51.93 -0.39 0.48 16 34 H 0.03 0.43 8.06 -51.93 -0.42 0.01 16 35 H 0.08 0.92 8.08 -51.93 -0.42 0.50 16 36 H 0.08 0.91 8.08 -51.93 -0.42 0.50 16 37 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 38 H 0.13 1.02 8.06 -52.49 -0.42 0.59 16 39 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 40 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 LS Contribution 350.54 15.07 5.28 5.28 Total: -1.00 -29.08 350.54 -11.34 -40.42 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -6.37 Total: 2.08 kcal Atomic # 6 Polarization: -20.98 SS G_CDS: -3.00 Total: -23.98 kcal Atomic # 7 Polarization: -37.51 SS G_CDS: 0.06 Total: -37.44 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 35 Polarization: -0.56 SS G_CDS: -2.29 Total: -2.85 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -29.08 -11.34 -40.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172481346.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.498 kcal (2) G-P(sol) polarization free energy of solvation -29.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds