Wall clock time and date at job start Tue Mar 31 2020 14:39:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 5 5 C 1.52999 * 109.47451 * 184.99880 * 4 2 1 6 6 C 1.50699 * 109.47201 * 180.02562 * 5 4 2 7 7 H 1.08004 * 120.00035 * 0.02562 * 6 5 4 8 8 C 1.37875 * 120.00490 * 180.02562 * 6 5 4 9 9 N 1.31518 * 119.99296 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 120.00678 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.46800 * 0.02562 * 10 8 6 12 12 H 1.48502 * 109.47142 * 119.99825 * 10 8 6 13 13 H 1.48496 * 109.47300 * 240.00249 * 10 8 6 14 14 N 1.46894 * 109.47515 * 239.99762 * 2 1 3 15 15 C 1.46908 * 110.99837 * 84.99962 * 14 2 1 16 16 C 1.53000 * 109.46840 * 180.02562 * 15 14 2 17 17 C 1.50704 * 109.46831 * 180.02562 * 16 15 14 18 18 C 1.38241 * 119.98650 * 269.71986 * 17 16 15 19 19 C 1.38224 * 120.00857 * 179.76491 * 18 17 16 20 20 C 1.38326 * 119.98522 * 0.51669 * 19 18 17 21 21 Br 1.89102 * 120.00336 * 179.72084 * 20 19 18 22 22 C 1.38322 * 119.98426 * 359.73829 * 20 19 18 23 23 C 1.38226 * 119.98647 * 0.02562 * 22 20 19 24 24 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 26 26 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 27 27 H 1.08998 * 109.47565 * 305.00629 * 4 2 1 28 28 H 1.09000 * 109.46738 * 65.00110 * 4 2 1 29 29 H 1.08996 * 109.47443 * 300.00108 * 5 4 2 30 30 H 1.09000 * 109.46961 * 60.00367 * 5 4 2 31 31 H 0.97006 * 119.99913 * 180.02562 * 9 8 6 32 32 H 1.00898 * 111.00604 * 208.95432 * 14 2 1 33 33 H 1.08993 * 109.47111 * 300.00155 * 15 14 2 34 34 H 1.09002 * 109.46900 * 60.00465 * 15 14 2 35 35 H 1.09000 * 109.47419 * 299.99657 * 16 15 14 36 36 H 1.09002 * 109.47282 * 60.00347 * 16 15 14 37 37 H 1.07998 * 120.00010 * 0.02562 * 18 17 16 38 38 H 1.08001 * 120.00610 * 180.23495 * 19 18 17 39 39 H 1.08000 * 120.00374 * 179.97438 * 22 20 19 40 40 H 1.08001 * 119.98833 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.6132 1.3137 6 6 4.0672 -1.3241 2.5439 7 1 3.3688 -1.8052 3.2127 8 6 5.4184 -1.3604 2.8157 9 7 6.2688 -0.7742 2.0016 10 14 6.0411 -2.2410 4.3409 11 1 4.8912 -2.8133 5.0861 12 1 6.9636 -3.3334 3.9399 13 1 6.7635 -1.2767 5.2090 14 7 2.0197 -0.6925 -1.1993 15 6 2.0825 0.2226 -2.3468 16 6 2.5952 -0.5332 -3.5744 17 6 2.6602 0.4057 -4.7514 18 6 1.5672 0.5434 -5.5865 19 6 1.6247 1.4081 -6.6634 20 6 2.7798 2.1276 -6.9114 21 35 2.8616 3.3048 -8.3891 22 6 3.8750 1.9855 -6.0786 23 6 3.8148 1.1242 -4.9991 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 0.5139 0.8900 27 1 1.6054 -0.2617 2.1370 28 1 1.7517 -1.7714 1.2056 29 1 3.9995 -1.0728 0.4261 30 1 3.8532 0.4370 1.3574 31 1 7.2195 -0.8000 2.1926 32 1 2.9173 -1.1205 -1.0286 33 1 1.0872 0.6163 -2.5525 34 1 2.7589 1.0462 -2.1181 35 1 3.5905 -0.9272 -3.3690 36 1 1.9185 -1.3566 -3.8029 37 1 0.6669 -0.0215 -5.3952 38 1 0.7695 1.5185 -7.3137 39 1 4.7771 2.5468 -6.2722 40 1 4.6701 1.0130 -4.3490 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172481346.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:24 Heat of formation + Delta-G solvation = -17.294575 kcal Electronic energy + Delta-G solvation = -18730.425499 eV Core-core repulsion = 15782.292111 eV Total energy + Delta-G solvation = -2948.133388 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 325.074 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.44784 -38.67810 -35.74702 -34.74969 -32.92513 -32.03765 -31.45265 -30.44975 -27.90900 -26.94415 -23.94085 -23.81074 -23.04836 -21.83402 -20.98194 -18.52928 -17.62351 -16.95538 -16.60343 -16.52950 -16.23835 -15.97302 -15.03627 -14.62365 -14.49715 -14.43605 -14.28647 -14.12172 -13.71802 -13.41928 -13.12926 -12.89605 -12.84589 -12.60837 -12.46361 -12.31554 -12.12430 -11.94971 -11.78661 -11.58279 -11.52279 -11.28417 -11.27501 -10.93836 -10.55215 -10.01535 -9.54740 -9.33533 -8.20517 -6.30624 0.06371 0.32188 0.62578 1.39304 1.40107 1.52984 2.40712 2.58473 3.12541 3.24952 3.76634 3.94332 3.97207 4.07042 4.17414 4.21886 4.38293 4.43011 4.46650 4.51211 4.62038 4.75743 4.79083 4.89005 4.97641 5.02875 5.05705 5.08644 5.19731 5.20858 5.23084 5.24897 5.45729 5.54360 5.61165 5.71047 5.83429 5.84689 6.22002 6.26366 6.44982 6.86032 7.38517 8.90963 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.021966 B = 0.002115 C = 0.001977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.364304 B =13238.609901 C =14162.580205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.086 3.914 3 H 0.025 0.975 4 C -0.103 4.103 5 C 0.027 3.973 6 C -0.541 4.541 7 H 0.058 0.942 8 C 0.001 3.999 9 N -0.931 5.931 10 Si 0.962 3.038 11 H -0.263 1.263 12 H -0.278 1.278 13 H -0.280 1.280 14 N -0.688 5.688 15 C 0.070 3.930 16 C -0.075 4.075 17 C -0.065 4.065 18 C -0.110 4.110 19 C -0.092 4.092 20 C -0.107 4.107 21 Br -0.053 7.053 22 C -0.096 4.096 23 C -0.123 4.123 24 H 0.060 0.940 25 H 0.059 0.941 26 H 0.060 0.940 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.001 0.999 30 H -0.018 1.018 31 H 0.263 0.737 32 H 0.339 0.661 33 H 0.080 0.920 34 H 0.013 0.987 35 H 0.067 0.933 36 H 0.093 0.907 37 H 0.152 0.848 38 H 0.149 0.851 39 H 0.140 0.860 40 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.318 6.635 -22.460 25.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.023 4.023 3 H 0.043 0.957 4 C -0.141 4.141 5 C -0.010 4.010 6 C -0.579 4.579 7 H 0.076 0.924 8 C -0.197 4.197 9 N -0.571 5.571 10 Si 0.787 3.213 11 H -0.187 1.187 12 H -0.203 1.203 13 H -0.205 1.205 14 N -0.320 5.320 15 C -0.059 4.059 16 C -0.113 4.113 17 C -0.066 4.066 18 C -0.128 4.128 19 C -0.111 4.111 20 C -0.187 4.187 21 Br 0.032 6.968 22 C -0.116 4.116 23 C -0.141 4.141 24 H 0.079 0.921 25 H 0.078 0.922 26 H 0.079 0.921 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.019 0.981 30 H 0.000 1.000 31 H 0.071 0.929 32 H 0.159 0.841 33 H 0.098 0.902 34 H 0.032 0.968 35 H 0.086 0.914 36 H 0.112 0.888 37 H 0.169 0.831 38 H 0.167 0.833 39 H 0.158 0.842 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -10.740 6.866 -23.200 26.471 hybrid contribution 1.720 0.096 1.358 2.194 sum -9.020 6.962 -21.842 24.635 Atomic orbital electron populations 1.21709 0.93065 1.02258 1.01508 1.21532 0.96507 0.94825 0.89483 0.95720 1.21659 0.96159 0.99952 0.96303 1.19004 0.92136 0.94359 0.95507 1.21719 0.92503 1.34360 1.09307 0.92401 1.25938 0.97402 0.96370 0.99998 1.70092 1.02712 1.45371 1.38975 0.85442 0.78416 0.78286 0.79178 1.18700 1.20341 1.20534 1.60708 1.33710 1.32895 1.04731 1.21919 1.00539 0.93381 0.90088 1.20549 1.02682 0.97017 0.91003 1.20086 0.93935 0.96561 0.96065 1.21329 0.98938 0.98584 0.93990 1.21345 0.96843 0.95007 0.97940 1.21936 0.98220 1.01437 0.97070 1.96701 1.98988 1.61246 1.39829 1.21256 0.97981 0.98280 0.94048 1.21288 0.98702 0.96585 0.97574 0.92125 0.92164 0.92078 0.92556 0.92449 0.98078 0.99954 0.92860 0.84139 0.90171 0.96849 0.91410 0.88829 0.83068 0.83293 0.84202 0.85058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.40 9.41 71.98 0.68 -2.73 16 2 C 0.09 2.89 2.65 44.92 0.12 3.01 16 3 H 0.02 0.89 7.80 -2.39 -0.02 0.87 16 4 C -0.10 -4.18 4.74 30.59 0.15 -4.03 16 5 C 0.03 1.40 4.80 29.85 0.14 1.54 16 6 C -0.54 -30.60 9.11 25.60 0.23 -30.37 16 7 H 0.06 3.17 7.74 -2.91 -0.02 3.15 16 8 C 0.00 0.04 5.46 84.65 0.46 0.50 16 9 N -0.93 -56.03 13.29 21.45 0.28 -55.75 16 10 Si 0.96 44.15 29.54 68.60 2.03 46.17 16 11 H -0.26 -11.55 7.11 99.48 0.71 -10.85 16 12 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 13 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 14 N -0.69 -21.88 6.31 -491.58 -3.10 -24.98 16 15 C 0.07 1.86 5.47 86.30 0.47 2.33 16 16 C -0.07 -1.68 5.61 29.85 0.17 -1.51 16 17 C -0.07 -1.36 5.13 -19.86 -0.10 -1.46 16 18 C -0.11 -1.93 9.70 22.27 0.22 -1.72 16 19 C -0.09 -1.58 9.79 22.29 0.22 -1.36 16 20 C -0.11 -2.06 6.22 22.31 0.14 -1.92 16 21 Br -0.05 -0.91 33.70 -20.37 -0.69 -1.60 16 22 C -0.10 -1.92 9.79 22.29 0.22 -1.70 16 23 C -0.12 -2.63 9.70 22.27 0.22 -2.41 16 24 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 25 H 0.06 1.41 7.45 -2.39 -0.02 1.39 16 26 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 27 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 28 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 29 H 0.00 0.05 6.43 -2.39 -0.02 0.04 16 30 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 31 H 0.26 14.84 8.31 -92.70 -0.77 14.07 16 32 H 0.34 12.35 6.47 -89.70 -0.58 11.76 16 33 H 0.08 1.93 7.44 -2.39 -0.02 1.91 16 34 H 0.01 0.40 8.06 -2.39 -0.02 0.38 16 35 H 0.07 1.65 8.08 -2.39 -0.02 1.63 16 36 H 0.09 1.91 8.08 -2.39 -0.02 1.89 16 37 H 0.15 2.03 8.06 -2.91 -0.02 2.00 16 38 H 0.15 1.95 8.06 -2.91 -0.02 1.92 16 39 H 0.14 2.43 8.06 -2.91 -0.02 2.41 16 40 H 0.13 2.77 8.06 -2.91 -0.02 2.75 16 Total: -1.00 -61.91 350.54 2.28 -59.63 By element: Atomic # 1 Polarization: 17.93 SS G_CDS: 0.43 Total: 18.36 kcal Atomic # 6 Polarization: -45.15 SS G_CDS: 3.32 Total: -41.83 kcal Atomic # 7 Polarization: -77.91 SS G_CDS: -2.82 Total: -80.73 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.17 kcal Atomic # 35 Polarization: -0.91 SS G_CDS: -0.69 Total: -1.60 kcal Total: -61.91 2.28 -59.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172481346.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.334 kcal (2) G-P(sol) polarization free energy of solvation -61.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds