Wall clock time and date at job start Tue Mar 31 2020 14:04:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38231 * 119.99748 * 2 1 4 4 C 1.38315 * 119.98995 * 179.97438 * 3 2 1 5 5 Br 1.89102 * 120.00788 * 179.97438 * 4 3 2 6 6 C 1.38346 * 119.97745 * 359.97438 * 4 3 2 7 7 C 1.38194 * 119.98875 * 0.02562 * 6 4 3 8 8 C 1.38225 * 119.98995 * 179.97438 * 2 1 3 9 9 C 1.50696 * 119.99060 * 359.74612 * 8 2 1 10 10 N 1.46905 * 109.47097 * 80.00345 * 9 8 2 11 11 C 1.46897 * 110.99875 * 179.97438 * 10 9 8 12 12 H 1.08995 * 109.47257 * 324.99765 * 11 10 9 13 13 C 1.53001 * 109.47177 * 84.99858 * 11 10 9 14 14 C 1.53002 * 109.47027 * 204.99635 * 11 10 9 15 15 C 1.52996 * 109.46875 * 65.00213 * 14 11 10 16 16 C 1.50704 * 109.46934 * 179.97438 * 15 14 11 17 17 H 1.07998 * 119.99883 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00025 * 179.97438 * 16 15 14 19 19 N 1.31514 * 119.99829 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00073 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47324 * 0.02562 * 20 18 16 22 22 H 1.48506 * 109.47202 * 120.00164 * 20 18 16 23 23 H 1.48503 * 109.47460 * 240.00277 * 20 18 16 24 24 H 1.08997 * 109.47402 * 270.02196 * 1 2 3 25 25 H 1.08999 * 109.47107 * 30.02225 * 1 2 3 26 26 H 1.08995 * 109.47767 * 150.02033 * 1 2 3 27 27 H 1.08001 * 120.00766 * 359.95832 * 3 2 1 28 28 H 1.07995 * 119.99932 * 180.02562 * 6 4 3 29 29 H 1.08002 * 119.99028 * 180.02562 * 7 6 4 30 30 H 1.08999 * 109.47159 * 199.99702 * 9 8 2 31 31 H 1.08996 * 109.47106 * 319.99943 * 9 8 2 32 32 H 1.00899 * 111.00049 * 56.04172 * 10 9 8 33 33 H 1.09002 * 109.46839 * 299.99854 * 13 11 10 34 34 H 1.09003 * 109.47315 * 59.99525 * 13 11 10 35 35 H 1.09005 * 109.47315 * 179.97438 * 13 11 10 36 36 H 1.09002 * 109.47040 * 185.00454 * 14 11 10 37 37 H 1.08994 * 109.46963 * 304.99824 * 14 11 10 38 38 H 1.09006 * 109.47020 * 299.99837 * 15 14 11 39 39 H 1.08994 * 109.47243 * 60.00388 * 15 14 11 40 40 H 0.97002 * 119.99906 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1971 0.0000 4 6 3.5812 1.1970 0.0005 5 35 4.5272 2.8344 -0.0002 6 6 4.2723 -0.0015 0.0016 7 6 3.5805 -1.1978 0.0016 8 6 2.1979 -1.1972 0.0005 9 6 1.4440 -2.5020 0.0069 10 7 0.9856 -2.8093 -1.3545 11 6 0.2454 -4.0778 -1.3870 12 1 0.6833 -4.7724 -0.6702 13 6 -1.2185 -3.8235 -1.0220 14 6 0.3238 -4.6782 -2.7921 15 6 1.7744 -5.0478 -3.1085 16 6 1.8515 -5.6397 -4.4923 17 1 0.9556 -5.7417 -5.0867 18 6 3.0660 -6.0501 -4.9998 19 7 4.1570 -5.9255 -4.2761 20 14 3.1615 -6.7845 -6.7147 21 1 1.8042 -6.8151 -7.3164 22 1 4.0583 -5.9550 -7.5592 23 1 3.6981 -8.1667 -6.6322 24 1 -0.3634 0.0004 1.0276 25 1 -0.3633 0.8898 -0.5142 26 1 -0.3634 -0.8901 -0.5135 27 1 1.6582 2.1325 -0.0007 28 1 5.3523 -0.0021 0.0024 29 1 4.1200 -2.1334 0.0029 30 1 2.0997 -3.2988 0.3579 31 1 0.5832 -2.4210 0.6706 32 1 1.7596 -2.8260 -2.0016 33 1 -1.2743 -3.3958 -0.0210 34 1 -1.6563 -3.1289 -1.7389 35 1 -1.7678 -4.7647 -1.0465 36 1 -0.2978 -5.5722 -2.8404 37 1 -0.0322 -3.9485 -3.5193 38 1 2.3960 -4.1536 -3.0602 39 1 2.1303 -5.7774 -2.3813 40 1 5.0115 -6.2139 -4.6333 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172484288.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:04 Heat of formation + Delta-G solvation = -0.338415 kcal Electronic energy + Delta-G solvation = -19347.726510 eV Core-core repulsion = 16400.328396 eV Total energy + Delta-G solvation = -2947.398114 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 325.074 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.73728 -37.13753 -33.97038 -32.94829 -32.33414 -31.12720 -29.53446 -28.75278 -27.03890 -25.39063 -24.24518 -22.15976 -21.41544 -20.49329 -19.55706 -16.68840 -16.21753 -15.99173 -15.29609 -15.02099 -14.58530 -14.50920 -13.84799 -13.43926 -13.25658 -12.81697 -12.62517 -12.51643 -12.41789 -12.34099 -12.12377 -11.72115 -11.51301 -11.24486 -11.15043 -10.98642 -10.77301 -10.70007 -10.48513 -10.37714 -10.26376 -9.79289 -9.30552 -9.05375 -8.86737 -8.54726 -8.38315 -8.04515 -6.03102 -4.04959 1.04162 1.28341 1.54637 3.29609 3.37426 3.41524 3.52200 4.44277 4.58056 4.68837 4.83421 4.94802 5.17347 5.22901 5.33223 5.42557 5.46837 5.60554 5.63860 5.66263 5.75593 5.84909 5.87544 5.90564 6.12674 6.14667 6.17023 6.30992 6.33775 6.47301 6.50374 6.61713 6.81292 6.87496 7.05028 7.42285 7.58791 7.75953 7.83877 7.96510 8.39945 9.01858 9.59572 11.08151 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.013735 B = 0.003028 C = 0.002593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2038.101601 B = 9243.681246 C =10794.171164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.055 4.055 3 C -0.098 4.098 4 C -0.088 4.088 5 Br -0.063 7.063 6 C -0.098 4.098 7 C -0.101 4.101 8 C -0.063 4.063 9 C 0.094 3.906 10 N -0.680 5.680 11 C 0.082 3.918 12 H 0.039 0.961 13 C -0.137 4.137 14 C -0.114 4.114 15 C 0.020 3.980 16 C -0.519 4.519 17 H 0.055 0.945 18 C 0.057 3.943 19 N -0.895 5.895 20 Si 0.891 3.109 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 H 0.065 0.935 25 H 0.063 0.937 26 H 0.093 0.907 27 H 0.129 0.871 28 H 0.130 0.870 29 H 0.133 0.867 30 H 0.039 0.961 31 H 0.079 0.921 32 H 0.355 0.645 33 H 0.043 0.957 34 H 0.058 0.942 35 H 0.051 0.949 36 H 0.054 0.946 37 H 0.057 0.943 38 H 0.015 0.985 39 H 0.012 0.988 40 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.076 16.427 13.209 21.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.057 4.057 3 C -0.118 4.118 4 C -0.167 4.167 5 Br 0.023 6.977 6 C -0.118 4.118 7 C -0.120 4.120 8 C -0.064 4.064 9 C -0.035 4.035 10 N -0.315 5.315 11 C -0.028 4.028 12 H 0.057 0.943 13 C -0.195 4.195 14 C -0.152 4.152 15 C -0.017 4.017 16 C -0.557 4.557 17 H 0.074 0.926 18 C -0.144 4.144 19 N -0.535 5.535 20 Si 0.719 3.281 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.211 1.211 24 H 0.084 0.916 25 H 0.082 0.918 26 H 0.112 0.888 27 H 0.147 0.853 28 H 0.148 0.852 29 H 0.150 0.850 30 H 0.057 0.943 31 H 0.097 0.903 32 H 0.177 0.823 33 H 0.062 0.938 34 H 0.077 0.923 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.033 0.967 39 H 0.030 0.970 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.109 17.378 13.242 22.069 hybrid contribution 0.913 -1.376 -0.874 1.868 sum -2.196 16.002 12.368 20.344 Atomic orbital electron populations 1.20912 0.90407 1.04388 1.02036 1.19743 0.96575 0.91552 0.97790 1.20954 0.91853 0.98490 1.00525 1.21705 0.94677 0.91359 1.08974 1.96674 1.75490 1.27751 1.97820 1.21036 1.00170 0.90817 0.99761 1.21177 0.93774 0.98027 0.99052 1.19916 0.93303 0.95064 0.98090 1.20928 0.97604 0.92195 0.92748 1.60647 1.30692 1.34264 1.05870 1.21629 0.93480 0.88926 0.98717 0.94335 1.21807 0.96211 1.00964 1.00496 1.21825 1.01049 0.99150 0.93179 1.19128 0.89827 0.96157 0.96563 1.21269 0.93469 1.40399 1.00544 0.92635 1.25017 0.95867 0.95946 0.97582 1.69963 0.98589 1.47948 1.36997 0.86556 0.78099 0.78827 0.84650 1.19722 1.21007 1.21057 0.91615 0.91827 0.88794 0.85342 0.85189 0.84961 0.94297 0.90297 0.82307 0.93782 0.92323 0.92964 0.92699 0.92439 0.96674 0.96999 0.93095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.26 9.26 36.00 0.33 -0.93 16 2 C -0.06 -0.67 5.88 -104.63 -0.62 -1.29 16 3 C -0.10 -1.17 9.44 -39.56 -0.37 -1.54 16 4 C -0.09 -1.08 6.22 -39.51 -0.25 -1.32 16 5 Br -0.06 -0.69 33.70 -68.01 -2.29 -2.98 16 6 C -0.10 -1.22 9.79 -39.56 -0.39 -1.61 16 7 C -0.10 -1.32 9.67 -39.59 -0.38 -1.70 16 8 C -0.06 -0.83 5.39 -104.62 -0.56 -1.39 16 9 C 0.09 1.26 4.74 -4.98 -0.02 1.23 16 10 N -0.68 -10.59 5.63 -107.99 -0.61 -11.19 16 11 C 0.08 1.32 2.65 -67.71 -0.18 1.15 16 12 H 0.04 0.65 7.80 -51.93 -0.40 0.24 16 13 C -0.14 -1.84 9.41 37.16 0.35 -1.49 16 14 C -0.11 -2.26 4.74 -26.73 -0.13 -2.39 16 15 C 0.02 0.51 4.80 -27.88 -0.13 0.37 16 16 C -0.52 -14.47 9.11 -34.44 -0.31 -14.78 16 17 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 18 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 19 N -0.90 -26.51 13.29 55.43 0.74 -25.77 16 20 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 21 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 22 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 23 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 24 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.06 0.60 8.09 -51.93 -0.42 0.18 16 26 H 0.09 1.10 6.34 -51.93 -0.33 0.77 16 27 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 28 H 0.13 1.43 8.06 -52.49 -0.42 1.01 16 29 H 0.13 1.65 8.04 -52.49 -0.42 1.23 16 30 H 0.04 0.54 7.91 -51.93 -0.41 0.13 16 31 H 0.08 0.95 6.59 -51.93 -0.34 0.61 16 32 H 0.35 6.41 6.46 -39.29 -0.25 6.16 16 33 H 0.04 0.52 7.45 -51.93 -0.39 0.14 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 37 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.02 0.39 6.43 -51.93 -0.33 0.06 16 39 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 40 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 346.16 15.07 5.22 5.22 Total: -1.00 -28.80 346.16 -10.95 -39.75 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: -6.23 Total: 2.59 kcal Atomic # 6 Polarization: -21.40 SS G_CDS: -2.76 Total: -24.16 kcal Atomic # 7 Polarization: -37.09 SS G_CDS: 0.13 Total: -36.96 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 35 Polarization: -0.69 SS G_CDS: -2.29 Total: -2.98 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -28.80 -10.95 -39.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172484288.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.417 kcal (2) G-P(sol) polarization free energy of solvation -28.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds