Wall clock time and date at job start Tue Mar 31 2020 14:04:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38231 * 119.99748 * 2 1 4 4 C 1.38315 * 119.98995 * 179.97438 * 3 2 1 5 5 Br 1.89102 * 120.00788 * 179.97438 * 4 3 2 6 6 C 1.38346 * 119.97745 * 359.97438 * 4 3 2 7 7 C 1.38194 * 119.98875 * 0.02562 * 6 4 3 8 8 C 1.38225 * 119.98995 * 179.97438 * 2 1 3 9 9 C 1.50696 * 119.99060 * 359.74612 * 8 2 1 10 10 N 1.46905 * 109.47097 * 80.00345 * 9 8 2 11 11 C 1.46897 * 110.99875 * 179.97438 * 10 9 8 12 12 H 1.08995 * 109.47257 * 324.99765 * 11 10 9 13 13 C 1.53001 * 109.47177 * 84.99858 * 11 10 9 14 14 C 1.53002 * 109.47027 * 204.99635 * 11 10 9 15 15 C 1.52996 * 109.46875 * 65.00213 * 14 11 10 16 16 C 1.50704 * 109.46934 * 179.97438 * 15 14 11 17 17 H 1.07998 * 119.99883 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00025 * 179.97438 * 16 15 14 19 19 N 1.31514 * 119.99829 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00073 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47324 * 0.02562 * 20 18 16 22 22 H 1.48506 * 109.47202 * 120.00164 * 20 18 16 23 23 H 1.48503 * 109.47460 * 240.00277 * 20 18 16 24 24 H 1.08997 * 109.47402 * 270.02196 * 1 2 3 25 25 H 1.08999 * 109.47107 * 30.02225 * 1 2 3 26 26 H 1.08995 * 109.47767 * 150.02033 * 1 2 3 27 27 H 1.08001 * 120.00766 * 359.95832 * 3 2 1 28 28 H 1.07995 * 119.99932 * 180.02562 * 6 4 3 29 29 H 1.08002 * 119.99028 * 180.02562 * 7 6 4 30 30 H 1.08999 * 109.47159 * 199.99702 * 9 8 2 31 31 H 1.08996 * 109.47106 * 319.99943 * 9 8 2 32 32 H 1.00899 * 111.00049 * 56.04172 * 10 9 8 33 33 H 1.09002 * 109.46839 * 299.99854 * 13 11 10 34 34 H 1.09003 * 109.47315 * 59.99525 * 13 11 10 35 35 H 1.09005 * 109.47315 * 179.97438 * 13 11 10 36 36 H 1.09002 * 109.47040 * 185.00454 * 14 11 10 37 37 H 1.08994 * 109.46963 * 304.99824 * 14 11 10 38 38 H 1.09006 * 109.47020 * 299.99837 * 15 14 11 39 39 H 1.08994 * 109.47243 * 60.00388 * 15 14 11 40 40 H 0.97002 * 119.99906 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1971 0.0000 4 6 3.5812 1.1970 0.0005 5 35 4.5272 2.8344 -0.0002 6 6 4.2723 -0.0015 0.0016 7 6 3.5805 -1.1978 0.0016 8 6 2.1979 -1.1972 0.0005 9 6 1.4440 -2.5020 0.0069 10 7 0.9856 -2.8093 -1.3545 11 6 0.2454 -4.0778 -1.3870 12 1 0.6833 -4.7724 -0.6702 13 6 -1.2185 -3.8235 -1.0220 14 6 0.3238 -4.6782 -2.7921 15 6 1.7744 -5.0478 -3.1085 16 6 1.8515 -5.6397 -4.4923 17 1 0.9556 -5.7417 -5.0867 18 6 3.0660 -6.0501 -4.9998 19 7 4.1570 -5.9255 -4.2761 20 14 3.1615 -6.7845 -6.7147 21 1 1.8042 -6.8151 -7.3164 22 1 4.0583 -5.9550 -7.5592 23 1 3.6981 -8.1667 -6.6322 24 1 -0.3634 0.0004 1.0276 25 1 -0.3633 0.8898 -0.5142 26 1 -0.3634 -0.8901 -0.5135 27 1 1.6582 2.1325 -0.0007 28 1 5.3523 -0.0021 0.0024 29 1 4.1200 -2.1334 0.0029 30 1 2.0997 -3.2988 0.3579 31 1 0.5832 -2.4210 0.6706 32 1 1.7596 -2.8260 -2.0016 33 1 -1.2743 -3.3958 -0.0210 34 1 -1.6563 -3.1289 -1.7389 35 1 -1.7678 -4.7647 -1.0465 36 1 -0.2978 -5.5722 -2.8404 37 1 -0.0322 -3.9485 -3.5193 38 1 2.3960 -4.1536 -3.0602 39 1 2.1303 -5.7774 -2.3813 40 1 5.0115 -6.2139 -4.6333 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172484288.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:04 Heat of formation + Delta-G solvation = -14.505664 kcal Electronic energy + Delta-G solvation = -19348.340848 eV Core-core repulsion = 16400.328396 eV Total energy + Delta-G solvation = -2948.012452 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 325.074 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.71339 -38.46533 -35.50250 -34.47756 -33.38372 -32.39418 -31.04323 -29.83835 -27.94006 -27.10730 -25.52753 -23.26357 -23.03209 -21.47887 -21.01576 -18.55119 -17.48070 -17.03211 -16.59455 -16.52594 -16.09342 -15.68776 -14.89896 -14.66036 -14.43064 -14.19499 -14.11851 -13.89308 -13.50822 -13.35965 -13.15693 -13.03892 -12.93017 -12.86301 -12.66976 -12.32724 -12.13004 -11.96918 -11.71725 -11.58980 -11.54911 -11.27988 -11.26795 -10.93077 -10.54927 -9.81740 -9.53047 -9.28664 -8.20450 -6.30352 0.06218 0.32686 0.61223 1.38626 1.39668 1.52268 2.40496 2.53631 3.13035 3.40459 3.75558 3.84253 3.93933 4.10321 4.23155 4.29332 4.37412 4.51654 4.53931 4.62087 4.68186 4.81666 4.87141 4.93856 4.96849 5.04295 5.07846 5.11945 5.20279 5.22300 5.26905 5.42608 5.49325 5.56130 5.65772 5.71994 5.85346 5.87103 6.22096 6.26643 6.40363 6.86531 7.38829 8.90922 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.013735 B = 0.003028 C = 0.002593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2038.101601 B = 9243.681246 C =10794.171164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.058 4.058 3 C -0.101 4.101 4 C -0.096 4.096 5 Br -0.050 7.050 6 C -0.107 4.107 7 C -0.115 4.115 8 C -0.076 4.076 9 C 0.099 3.901 10 N -0.677 5.677 11 C 0.087 3.913 12 H 0.030 0.970 13 C -0.128 4.128 14 C -0.101 4.101 15 C 0.027 3.973 16 C -0.541 4.541 17 H 0.057 0.943 18 C 0.002 3.998 19 N -0.931 5.931 20 Si 0.960 3.040 21 H -0.263 1.263 22 H -0.279 1.279 23 H -0.279 1.279 24 H 0.083 0.917 25 H 0.074 0.926 26 H 0.082 0.918 27 H 0.147 0.853 28 H 0.139 0.861 29 H 0.128 0.872 30 H 0.029 0.971 31 H 0.098 0.902 32 H 0.337 0.663 33 H 0.064 0.936 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.057 0.943 37 H 0.054 0.946 38 H -0.002 1.002 39 H -0.016 1.016 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.443 17.258 13.189 22.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.060 4.060 3 C -0.120 4.120 4 C -0.175 4.175 5 Br 0.035 6.965 6 C -0.126 4.126 7 C -0.134 4.134 8 C -0.077 4.077 9 C -0.029 4.029 10 N -0.309 5.309 11 C -0.023 4.023 12 H 0.048 0.952 13 C -0.185 4.185 14 C -0.139 4.139 15 C -0.010 4.010 16 C -0.579 4.579 17 H 0.075 0.925 18 C -0.196 4.196 19 N -0.571 5.571 20 Si 0.785 3.215 21 H -0.187 1.187 22 H -0.205 1.205 23 H -0.204 1.204 24 H 0.102 0.898 25 H 0.093 0.907 26 H 0.101 0.899 27 H 0.165 0.835 28 H 0.157 0.843 29 H 0.146 0.854 30 H 0.047 0.953 31 H 0.116 0.884 32 H 0.156 0.844 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.016 0.984 39 H 0.002 0.998 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.499 18.214 13.236 22.960 hybrid contribution 1.383 -1.593 -0.837 2.269 sum -3.116 16.621 12.400 20.969 Atomic orbital electron populations 1.20923 0.88910 1.04382 1.03188 1.19989 0.97698 0.91214 0.97065 1.21203 0.91805 0.99163 0.99876 1.21888 0.95191 0.91803 1.08644 1.96677 1.75321 1.26709 1.97776 1.21177 1.00760 0.90821 0.99885 1.21264 0.94161 0.98280 0.99723 1.19952 0.93324 0.95336 0.99079 1.20937 0.98190 0.92169 0.91652 1.60738 1.29904 1.33557 1.06732 1.21564 0.95735 0.88947 0.96012 0.95192 1.21720 0.93531 1.01662 1.01630 1.21639 0.97381 0.99360 0.95550 1.19000 0.92823 0.94410 0.94736 1.21725 0.93700 1.40568 1.01902 0.92470 1.25914 0.95517 0.96360 1.01802 1.70087 0.99171 1.48899 1.38950 0.85472 0.78483 0.78004 0.79547 1.18669 1.20514 1.20447 0.89801 0.90661 0.89912 0.83495 0.84317 0.85408 0.95268 0.88387 0.84350 0.91728 0.92178 0.92089 0.92476 0.92721 0.98371 0.99768 0.92910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.17 9.26 71.24 0.66 -1.51 16 2 C -0.06 -1.34 5.88 -19.87 -0.12 -1.46 16 3 C -0.10 -2.23 9.44 22.29 0.21 -2.02 16 4 C -0.10 -2.26 6.22 22.31 0.14 -2.12 16 5 Br -0.05 -1.04 33.70 -20.37 -0.69 -1.72 16 6 C -0.11 -2.65 9.79 22.28 0.22 -2.43 16 7 C -0.11 -3.06 9.67 22.26 0.22 -2.84 16 8 C -0.08 -1.98 5.39 -19.86 -0.11 -2.08 16 9 C 0.10 2.61 4.74 85.55 0.41 3.01 16 10 N -0.68 -21.01 5.63 -495.58 -2.79 -23.80 16 11 C 0.09 2.77 2.65 44.92 0.12 2.89 16 12 H 0.03 1.01 7.80 -2.39 -0.02 0.99 16 13 C -0.13 -3.14 9.41 71.98 0.68 -2.46 16 14 C -0.10 -4.04 4.74 30.59 0.15 -3.89 16 15 C 0.03 1.41 4.80 29.85 0.14 1.55 16 16 C -0.54 -30.61 9.11 25.60 0.23 -30.38 16 17 H 0.06 3.14 7.74 -2.91 -0.02 3.11 16 18 C 0.00 0.11 5.46 84.65 0.46 0.57 16 19 N -0.93 -56.18 13.29 21.45 0.28 -55.90 16 20 Si 0.96 44.34 29.54 68.60 2.03 46.37 16 21 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 22 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 23 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 24 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 25 H 0.07 1.21 8.09 -2.39 -0.02 1.20 16 26 H 0.08 1.74 6.34 -2.39 -0.02 1.73 16 27 H 0.15 2.64 8.06 -2.91 -0.02 2.62 16 28 H 0.14 3.06 8.06 -2.91 -0.02 3.04 16 29 H 0.13 3.39 8.04 -2.91 -0.02 3.37 16 30 H 0.03 0.82 7.91 -2.39 -0.02 0.80 16 31 H 0.10 2.19 6.59 -2.39 -0.02 2.17 16 32 H 0.34 12.57 6.46 -89.69 -0.58 12.00 16 33 H 0.06 1.34 7.45 -2.39 -0.02 1.32 16 34 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 36 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 37 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 38 H 0.00 -0.10 6.43 -2.38 -0.02 -0.12 16 39 H -0.02 -0.90 8.14 -2.39 -0.02 -0.92 16 40 H 0.26 14.90 8.31 -92.71 -0.77 14.12 16 Total: -1.00 -61.70 346.16 2.68 -59.02 By element: Atomic # 1 Polarization: 18.77 SS G_CDS: 0.44 Total: 19.21 kcal Atomic # 6 Polarization: -46.58 SS G_CDS: 3.40 Total: -43.18 kcal Atomic # 7 Polarization: -77.19 SS G_CDS: -2.50 Total: -79.69 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Atomic # 35 Polarization: -1.04 SS G_CDS: -0.69 Total: -1.72 kcal Total: -61.70 2.68 -59.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172484288.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.515 kcal (2) G-P(sol) polarization free energy of solvation -61.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds