Wall clock time and date at job start Tue Mar 31 2020 14:02:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38231 * 119.99721 * 2 1 4 4 C 1.38306 * 119.98961 * 180.02562 * 3 2 1 5 5 Br 1.89099 * 120.00836 * 180.02562 * 4 3 2 6 6 C 1.38341 * 119.97731 * 359.97438 * 4 3 2 7 7 C 1.38195 * 119.99341 * 0.02562 * 6 4 3 8 8 C 1.50701 * 119.99494 * 179.97438 * 7 6 4 9 9 N 1.46901 * 109.46921 * 89.99903 * 8 7 6 10 10 C 1.46906 * 110.99793 * 179.97438 * 9 8 7 11 11 H 1.09003 * 109.47279 * 325.00167 * 10 9 8 12 12 C 1.52995 * 109.46946 * 85.00144 * 10 9 8 13 13 C 1.53000 * 109.47281 * 205.00148 * 10 9 8 14 14 C 1.53001 * 109.46786 * 64.99922 * 13 10 9 15 15 C 1.50708 * 109.46907 * 180.02562 * 14 13 10 16 16 H 1.07998 * 119.99767 * 0.02562 * 15 14 13 17 17 C 1.37873 * 119.99999 * 179.97438 * 15 14 13 18 18 N 1.31516 * 120.00131 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 119.99897 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47225 * 60.00418 * 19 17 15 21 21 H 1.48502 * 109.47309 * 180.02562 * 19 17 15 22 22 H 1.48507 * 109.47366 * 300.00067 * 19 17 15 23 23 C 1.38223 * 119.99026 * 180.26936 * 2 1 3 24 24 H 1.08995 * 109.47154 * 89.99485 * 1 2 3 25 25 H 1.09004 * 109.47048 * 210.00377 * 1 2 3 26 26 H 1.08997 * 109.46615 * 329.99872 * 1 2 3 27 27 H 1.08005 * 120.00756 * 0.02562 * 3 2 1 28 28 H 1.08012 * 120.00162 * 180.02562 * 6 4 3 29 29 H 1.09002 * 109.47060 * 210.00085 * 8 7 6 30 30 H 1.09001 * 109.47380 * 330.00172 * 8 7 6 31 31 H 1.00899 * 111.00283 * 303.95218 * 9 8 7 32 32 H 1.09001 * 109.47056 * 179.97438 * 12 10 9 33 33 H 1.09000 * 109.47395 * 299.99746 * 12 10 9 34 34 H 1.09003 * 109.47112 * 59.99921 * 12 10 9 35 35 H 1.08996 * 109.47600 * 185.00056 * 13 10 9 36 36 H 1.09003 * 109.47172 * 305.00516 * 13 10 9 37 37 H 1.09001 * 109.47460 * 300.00033 * 14 13 10 38 38 H 1.08999 * 109.47250 * 60.00412 * 14 13 10 39 39 H 0.97000 * 119.99909 * 180.02562 * 18 17 15 40 40 H 1.08007 * 119.99312 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5812 1.1970 -0.0005 5 35 4.5272 2.8343 0.0002 6 6 4.2723 -0.0015 -0.0005 7 6 3.5806 -1.1978 -0.0005 8 6 4.3333 -2.5034 -0.0011 9 7 4.5785 -2.9278 1.3837 10 6 5.3115 -4.2003 1.4223 11 1 4.9928 -4.8286 0.5906 12 6 6.8127 -3.9277 1.3095 13 6 5.0210 -4.9164 2.7428 14 6 3.5410 -5.3000 2.8001 15 6 3.2547 -6.0047 4.1011 16 1 4.0488 -6.1628 4.8157 17 6 1.9787 -6.4467 4.3794 18 7 1.0115 -6.2538 3.5094 19 14 1.6240 -7.3209 5.9917 20 1 1.9462 -6.4179 7.1257 21 1 0.1875 -7.6931 6.0474 22 1 2.4565 -8.5473 6.0834 23 6 2.1980 -1.1972 -0.0056 24 1 -0.3633 0.0001 -1.0276 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3632 0.8900 0.5139 27 1 1.6582 2.1325 0.0004 28 1 5.3524 -0.0021 -0.0005 29 1 3.7436 -3.2626 -0.5149 30 1 5.2857 -2.3735 -0.5153 31 1 5.0680 -2.2124 1.9000 32 1 7.3567 -4.8718 1.3386 33 1 7.0197 -3.4176 0.3688 34 1 7.1314 -3.2993 2.1413 35 1 5.6324 -5.8162 2.8105 36 1 5.2570 -4.2534 3.5753 37 1 2.9295 -4.4001 2.7326 38 1 3.3050 -5.9629 1.9677 39 1 0.1138 -6.5644 3.7054 40 1 1.6577 -2.1323 -0.0104 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172484457.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:02:37 Heat of formation + Delta-G solvation = -16.099454 kcal Electronic energy + Delta-G solvation = -19142.473526 eV Core-core repulsion = 16194.391962 eV Total energy + Delta-G solvation = -2948.081564 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 325.074 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.62029 -38.46990 -35.49416 -34.35431 -33.94673 -32.09002 -30.70102 -29.86847 -27.93726 -27.03215 -26.00799 -23.15670 -22.71111 -21.68717 -21.23520 -18.34876 -17.57931 -16.90735 -16.56915 -16.49100 -16.13993 -15.28245 -14.92521 -14.82610 -14.44821 -14.15447 -14.13054 -13.87853 -13.69014 -13.33471 -13.29426 -13.12817 -12.95593 -12.81118 -12.64257 -12.34898 -12.14643 -12.03206 -11.77344 -11.59069 -11.50666 -11.26810 -11.19539 -10.95109 -10.46333 -9.75143 -9.59040 -9.11389 -8.12144 -6.22196 0.12299 0.25663 0.60290 1.40362 1.43491 1.51042 2.44730 2.53590 3.20007 3.42589 3.73805 3.75802 4.05730 4.09677 4.22757 4.29783 4.33555 4.40377 4.46060 4.51769 4.64956 4.79965 4.81020 4.87800 4.92510 5.00368 5.06218 5.12006 5.14081 5.22388 5.30617 5.44877 5.48397 5.60097 5.60940 5.84037 5.90891 6.04937 6.25216 6.36726 6.60246 6.97323 7.45569 8.98796 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.015653 B = 0.002942 C = 0.002674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.339984 B = 9514.803973 C =10470.029920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.084 4.084 3 C -0.098 4.098 4 C -0.094 4.094 5 Br -0.047 7.047 6 C -0.095 4.095 7 C -0.073 4.073 8 C 0.105 3.895 9 N -0.686 5.686 10 C 0.091 3.909 11 H 0.063 0.937 12 C -0.169 4.169 13 C -0.088 4.088 14 C 0.040 3.960 15 C -0.545 4.545 16 H 0.054 0.946 17 C 0.000 4.000 18 N -0.931 5.931 19 Si 0.958 3.042 20 H -0.269 1.269 21 H -0.283 1.283 22 H -0.268 1.268 23 C -0.099 4.099 24 H 0.087 0.913 25 H 0.063 0.937 26 H 0.082 0.918 27 H 0.147 0.853 28 H 0.141 0.859 29 H 0.070 0.930 30 H 0.056 0.944 31 H 0.342 0.658 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.060 0.940 35 H 0.050 0.950 36 H 0.045 0.955 37 H 0.004 0.996 38 H -0.023 1.023 39 H 0.261 0.739 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.797 19.498 -11.373 23.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.085 4.085 3 C -0.118 4.118 4 C -0.174 4.174 5 Br 0.039 6.961 6 C -0.116 4.116 7 C -0.074 4.074 8 C -0.024 4.024 9 N -0.317 5.317 10 C -0.019 4.019 11 H 0.082 0.918 12 C -0.228 4.228 13 C -0.126 4.126 14 C 0.003 3.997 15 C -0.583 4.583 16 H 0.072 0.928 17 C -0.197 4.197 18 N -0.571 5.571 19 Si 0.783 3.217 20 H -0.194 1.194 21 H -0.208 1.208 22 H -0.193 1.193 23 C -0.118 4.118 24 H 0.105 0.895 25 H 0.082 0.918 26 H 0.101 0.899 27 H 0.165 0.835 28 H 0.159 0.841 29 H 0.088 0.912 30 H 0.074 0.926 31 H 0.161 0.839 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.079 0.921 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.022 0.978 38 H -0.004 1.004 39 H 0.069 0.931 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 6.367 19.775 -11.335 23.666 hybrid contribution 0.127 -0.799 0.556 0.981 sum 6.493 18.976 -10.779 22.770 Atomic orbital electron populations 1.20854 0.89126 1.03596 1.03502 1.20161 0.97608 0.92119 0.98598 1.21171 0.92003 0.98948 0.99700 1.21820 0.95030 0.91885 1.08635 1.96686 1.75153 1.26512 1.97792 1.21062 1.00550 0.90191 0.99766 1.19835 0.93837 0.94514 0.99228 1.20847 0.98350 0.92884 0.90274 1.60427 1.53359 1.05215 1.12741 1.21535 0.91958 0.90575 0.97790 0.91821 1.22393 0.95751 1.02602 1.02053 1.21459 0.97152 0.97979 0.96043 1.18811 0.92810 0.94425 0.93697 1.21798 0.94730 1.37125 1.04623 0.92796 1.25918 0.96283 0.97079 1.00431 1.70106 1.01587 1.48235 1.37207 0.85610 0.77084 0.79142 0.79842 1.19410 1.20839 1.19278 1.21256 0.94136 0.98312 0.98065 0.89492 0.91847 0.89927 0.83477 0.84134 0.91167 0.92556 0.83929 0.91629 0.91659 0.92083 0.93170 0.93641 0.97756 1.00427 0.93061 0.86321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.18 10.01 71.24 0.71 -1.47 16 2 C -0.08 -1.99 5.88 -19.87 -0.12 -2.10 16 3 C -0.10 -2.14 9.44 22.28 0.21 -1.93 16 4 C -0.09 -2.11 6.22 22.31 0.14 -1.97 16 5 Br -0.05 -0.90 33.70 -20.37 -0.69 -1.58 16 6 C -0.10 -2.20 9.44 22.28 0.21 -1.99 16 7 C -0.07 -1.90 5.39 -19.87 -0.11 -2.01 16 8 C 0.10 2.79 5.61 85.56 0.48 3.27 16 9 N -0.69 -21.68 5.69 -495.56 -2.82 -24.50 16 10 C 0.09 2.94 2.59 44.91 0.12 3.06 16 11 H 0.06 2.17 7.80 -2.39 -0.02 2.15 16 12 C -0.17 -4.07 9.16 71.98 0.66 -3.41 16 13 C -0.09 -3.65 4.83 30.59 0.15 -3.51 16 14 C 0.04 2.15 4.86 29.85 0.15 2.30 16 15 C -0.54 -32.02 9.11 25.60 0.23 -31.79 16 16 H 0.05 3.05 7.74 -2.91 -0.02 3.02 16 17 C 0.00 0.02 5.46 84.65 0.46 0.48 16 18 N -0.93 -57.98 13.29 21.45 0.28 -57.70 16 19 Si 0.96 45.38 29.54 68.60 2.03 47.40 16 20 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 21 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 22 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 23 C -0.10 -2.72 9.36 22.27 0.21 -2.52 16 24 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 25 H 0.06 1.36 8.09 -2.38 -0.02 1.34 16 26 H 0.08 1.31 8.09 -2.39 -0.02 1.29 16 27 H 0.15 2.56 8.06 -2.91 -0.02 2.53 16 28 H 0.14 2.77 8.06 -2.90 -0.02 2.74 16 29 H 0.07 2.03 8.00 -2.39 -0.02 2.01 16 30 H 0.06 1.24 7.38 -2.39 -0.02 1.22 16 31 H 0.34 9.90 8.47 -89.69 -0.76 9.14 16 32 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.06 1.32 7.45 -2.39 -0.02 1.31 16 34 H 0.06 1.40 8.13 -2.39 -0.02 1.38 16 35 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.00 0.24 7.75 -2.39 -0.02 0.22 16 38 H -0.02 -1.34 8.14 -2.39 -0.02 -1.36 16 39 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 40 H 0.12 3.56 8.06 -2.91 -0.02 3.53 16 Total: -1.00 -66.13 352.99 2.56 -63.58 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: 0.25 Total: 16.38 kcal Atomic # 6 Polarization: -47.08 SS G_CDS: 3.50 Total: -43.58 kcal Atomic # 7 Polarization: -79.67 SS G_CDS: -2.54 Total: -82.20 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.40 kcal Atomic # 35 Polarization: -0.90 SS G_CDS: -0.69 Total: -1.58 kcal Total: -66.13 2.56 -63.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172484457.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.477 kcal (2) G-P(sol) polarization free energy of solvation -66.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds