Wall clock time and date at job start Tue Mar 31 2020 14:39:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47132 * 2 1 4 4 C 1.53008 * 109.47004 * 119.99617 * 2 1 3 5 5 C 1.53001 * 109.46954 * 182.85798 * 4 2 1 6 6 C 1.50703 * 109.47013 * 175.01851 * 5 4 2 7 7 H 1.08002 * 119.99716 * 0.02562 * 6 5 4 8 8 C 1.37875 * 119.99901 * 179.97438 * 6 5 4 9 9 N 1.31522 * 120.00089 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99899 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.46882 * 0.02562 * 10 8 6 12 12 H 1.48506 * 109.46614 * 120.00481 * 10 8 6 13 13 H 1.48499 * 109.47316 * 240.00294 * 10 8 6 14 14 N 1.46900 * 109.47278 * 239.99684 * 2 1 3 15 15 C 1.46893 * 111.00161 * 70.07638 * 14 2 1 16 16 C 1.46901 * 111.00079 * 306.11722 * 14 2 1 17 17 C 1.50698 * 109.47065 * 189.99854 * 16 14 2 18 18 C 1.38240 * 119.99299 * 269.72975 * 17 16 14 19 19 C 1.38214 * 120.01046 * 179.77182 * 18 17 16 20 20 C 1.38326 * 119.98832 * 0.50106 * 19 18 17 21 21 Br 1.89107 * 120.00969 * 179.72557 * 20 19 18 22 22 C 1.38330 * 119.98277 * 359.75372 * 20 19 18 23 23 C 1.38223 * 119.98451 * 359.97438 * 22 20 19 24 24 H 1.09006 * 109.46477 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47380 * 299.99801 * 1 2 3 26 26 H 1.08995 * 109.46993 * 60.00691 * 1 2 3 27 27 H 1.08997 * 109.46772 * 302.85256 * 4 2 1 28 28 H 1.08996 * 109.46813 * 62.85676 * 4 2 1 29 29 H 1.08995 * 109.46952 * 295.01908 * 5 4 2 30 30 H 1.09008 * 109.46984 * 55.02221 * 5 4 2 31 31 H 0.96991 * 119.99866 * 179.97438 * 9 8 6 32 32 H 1.09003 * 109.47052 * 53.53376 * 15 14 2 33 33 H 1.09004 * 109.47198 * 293.53959 * 15 14 2 34 34 H 1.08993 * 109.47336 * 173.53553 * 15 14 2 35 35 H 1.08993 * 109.47414 * 310.00414 * 16 14 2 36 36 H 1.08997 * 109.46579 * 70.00145 * 16 14 2 37 37 H 1.07999 * 119.99258 * 0.02562 * 18 17 16 38 38 H 1.07999 * 120.00793 * 180.23085 * 19 18 17 39 39 H 1.07994 * 120.00753 * 179.97438 * 22 20 19 40 40 H 1.07995 * 119.98840 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2494 5 6 3.5683 -0.6592 1.2858 6 6 4.0648 -1.2611 2.5751 7 1 3.3607 -1.6494 3.2962 8 6 5.4180 -1.3170 2.8337 9 7 6.2754 -0.8446 1.9554 10 14 6.0334 -2.0624 4.4322 11 1 4.8762 -2.5175 5.2439 12 1 6.9130 -3.2206 4.1318 13 1 6.8004 -1.0422 5.1912 14 7 2.0197 -0.6926 -1.1994 15 6 1.7546 0.0979 -2.4088 16 6 1.4331 -2.0349 -1.3086 17 6 2.1345 -2.8024 -2.3995 18 6 1.6609 -2.7477 -3.6971 19 6 2.3067 -3.4477 -4.6987 20 6 3.4209 -4.2113 -4.4007 21 35 4.3004 -5.1755 -5.7693 22 6 3.8914 -4.2699 -3.1012 23 6 3.2482 -3.5651 -2.1012 24 1 -0.3632 -1.0278 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 1.6355 -0.2377 2.1385 28 1 1.7191 -1.7625 1.2241 29 1 3.9748 -1.2187 0.4434 30 1 3.8914 0.3799 1.2218 31 1 7.2273 -0.8835 2.1375 32 1 2.1612 1.1014 -2.2834 33 1 0.6789 0.1597 -2.5739 34 1 2.2269 -0.3809 -3.2665 35 1 1.5503 -2.5609 -0.3612 36 1 0.3732 -1.9497 -1.5481 37 1 0.7886 -2.1547 -3.9289 38 1 1.9389 -3.4020 -5.7131 39 1 4.7610 -4.8663 -2.8680 40 1 3.6152 -3.6111 -1.0866 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172504287.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:42 Heat of formation + Delta-G solvation = 18.286783 kcal Electronic energy + Delta-G solvation = -19775.147553 eV Core-core repulsion = 16828.557088 eV Total energy + Delta-G solvation = -2946.590465 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 325.074 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.64675 -37.90948 -33.72019 -32.71945 -31.42548 -30.97988 -29.86022 -28.85991 -26.65383 -25.27746 -23.76036 -22.69264 -21.42384 -20.83492 -18.97497 -16.69921 -16.15877 -15.76671 -15.49450 -15.00372 -14.56696 -14.36402 -14.11575 -13.45434 -13.27498 -13.04382 -12.84956 -12.64732 -12.28294 -12.03745 -11.72457 -11.57990 -11.35677 -11.18421 -10.99187 -10.88533 -10.82048 -10.64894 -10.44022 -10.31605 -10.17855 -9.65350 -9.22739 -8.94465 -8.89744 -8.54923 -8.25725 -7.81870 -5.90350 -3.92216 1.12007 1.38138 1.61467 3.34533 3.42442 3.45821 3.61672 4.40734 4.52220 4.78233 4.91173 4.93446 5.25581 5.30516 5.39786 5.45068 5.45370 5.51898 5.59995 5.68407 5.71474 5.76762 5.90578 6.04074 6.12187 6.17891 6.19522 6.24029 6.30711 6.35593 6.62833 6.69521 6.81337 6.89322 7.24988 7.43619 7.51994 7.83668 8.04380 8.19544 8.54638 9.17226 9.70979 11.20320 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.012208 B = 0.003592 C = 0.002899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2293.120194 B = 7792.779041 C = 9657.422846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.081 3.919 3 H 0.079 0.921 4 C -0.103 4.103 5 C 0.032 3.968 6 C -0.520 4.520 7 H 0.051 0.949 8 C 0.058 3.942 9 N -0.892 5.892 10 Si 0.884 3.116 11 H -0.274 1.274 12 H -0.285 1.285 13 H -0.285 1.285 14 N -0.515 5.515 15 C 0.021 3.979 16 C 0.086 3.914 17 C -0.052 4.052 18 C -0.113 4.113 19 C -0.097 4.097 20 C -0.094 4.094 21 Br -0.065 7.065 22 C -0.090 4.090 23 C -0.084 4.084 24 H 0.054 0.946 25 H 0.059 0.941 26 H 0.047 0.953 27 H 0.050 0.950 28 H 0.046 0.954 29 H 0.030 0.970 30 H 0.010 0.990 31 H 0.258 0.742 32 H 0.065 0.935 33 H 0.019 0.981 34 H 0.065 0.935 35 H 0.094 0.906 36 H 0.040 0.960 37 H 0.125 0.875 38 H 0.127 0.873 39 H 0.131 0.869 40 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.968 -5.791 -16.369 20.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.027 4.027 3 H 0.098 0.902 4 C -0.141 4.141 5 C -0.005 4.005 6 C -0.559 4.559 7 H 0.069 0.931 8 C -0.143 4.143 9 N -0.532 5.532 10 Si 0.712 3.288 11 H -0.199 1.199 12 H -0.211 1.211 13 H -0.212 1.212 14 N -0.238 5.238 15 C -0.127 4.127 16 C -0.041 4.041 17 C -0.053 4.053 18 C -0.132 4.132 19 C -0.117 4.117 20 C -0.173 4.173 21 Br 0.020 6.980 22 C -0.110 4.110 23 C -0.103 4.103 24 H 0.073 0.927 25 H 0.078 0.922 26 H 0.066 0.934 27 H 0.069 0.931 28 H 0.065 0.935 29 H 0.048 0.952 30 H 0.028 0.972 31 H 0.067 0.933 32 H 0.084 0.916 33 H 0.038 0.962 34 H 0.084 0.916 35 H 0.113 0.887 36 H 0.058 0.942 37 H 0.142 0.858 38 H 0.145 0.855 39 H 0.149 0.851 40 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -8.941 -6.169 -16.856 20.053 hybrid contribution -0.547 -0.016 1.049 1.183 sum -9.488 -6.185 -15.806 19.445 Atomic orbital electron populations 1.22515 0.98798 1.01640 1.01454 1.21934 0.91119 0.98621 0.91049 0.90237 1.21748 1.00963 0.98098 0.93305 1.18976 0.87845 0.97047 0.96674 1.21384 0.91587 1.39081 1.03834 0.93085 1.24985 0.97139 0.95736 0.96400 1.69991 1.01801 1.46625 1.34770 0.86669 0.78839 0.78989 0.84271 1.19883 1.21123 1.21158 1.62114 1.58206 1.01233 1.02220 1.22448 0.98160 0.98550 0.93532 1.21170 0.94736 0.90490 0.97694 1.19997 0.95339 0.95620 0.94307 1.21027 1.00304 0.99604 0.92273 1.20964 0.94488 0.96550 0.99711 1.21718 0.99420 1.02883 0.93292 1.96665 1.78438 1.73585 1.49284 1.21160 0.99740 0.99165 0.90897 1.21269 0.94080 0.94752 1.00225 0.92676 0.92198 0.93428 0.93125 0.93506 0.95178 0.97193 0.93266 0.91602 0.96215 0.91597 0.88741 0.94157 0.85755 0.85513 0.85066 0.84101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.42 8.45 37.16 0.31 -2.11 16 2 C 0.08 1.31 2.33 -67.71 -0.16 1.15 16 3 H 0.08 1.35 7.98 -51.93 -0.41 0.94 16 4 C -0.10 -2.04 4.53 -26.73 -0.12 -2.16 16 5 C 0.03 0.80 4.78 -27.88 -0.13 0.67 16 6 C -0.52 -14.61 9.11 -34.44 -0.31 -14.92 16 7 H 0.05 1.40 7.74 -52.49 -0.41 0.99 16 8 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 9 N -0.89 -26.91 13.29 55.43 0.74 -26.17 16 10 Si 0.88 21.67 29.54 -169.99 -5.02 16.65 16 11 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 12 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 13 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 14 N -0.51 -8.13 4.15 -236.34 -0.98 -9.11 16 15 C 0.02 0.29 8.75 60.06 0.53 0.81 16 16 C 0.09 1.22 4.06 -4.98 -0.02 1.20 16 17 C -0.05 -0.71 4.87 -104.62 -0.51 -1.22 16 18 C -0.11 -1.33 8.05 -39.59 -0.32 -1.65 16 19 C -0.10 -1.13 9.79 -39.56 -0.39 -1.52 16 20 C -0.09 -1.19 6.22 -39.52 -0.25 -1.44 16 21 Br -0.06 -0.74 33.70 -68.01 -2.29 -3.03 16 22 C -0.09 -1.23 9.79 -39.55 -0.39 -1.61 16 23 C -0.08 -1.24 9.70 -39.59 -0.38 -1.62 16 24 H 0.05 0.69 6.55 -51.93 -0.34 0.35 16 25 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.05 0.56 6.83 -51.93 -0.35 0.21 16 27 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.05 0.90 6.25 -51.93 -0.32 0.57 16 29 H 0.03 0.81 7.84 -51.93 -0.41 0.41 16 30 H 0.01 0.27 8.14 -51.92 -0.42 -0.15 16 31 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 32 H 0.07 0.88 8.00 -51.93 -0.42 0.46 16 33 H 0.02 0.23 6.88 -51.93 -0.36 -0.13 16 34 H 0.07 0.86 6.34 -51.93 -0.33 0.54 16 35 H 0.09 1.46 5.98 -51.93 -0.31 1.15 16 36 H 0.04 0.50 6.75 -51.93 -0.35 0.15 16 37 H 0.12 1.23 8.04 -52.49 -0.42 0.81 16 38 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 39 H 0.13 1.66 8.06 -52.49 -0.42 1.24 16 40 H 0.14 2.25 8.06 -52.49 -0.42 1.83 16 LS Contribution 340.00 15.07 5.12 5.12 Total: -1.00 -29.78 340.00 -10.78 -40.56 By element: Atomic # 1 Polarization: 4.93 SS G_CDS: -6.10 Total: -1.17 kcal Atomic # 6 Polarization: -20.62 SS G_CDS: -2.24 Total: -22.85 kcal Atomic # 7 Polarization: -35.03 SS G_CDS: -0.25 Total: -35.28 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 35 Polarization: -0.74 SS G_CDS: -2.29 Total: -3.03 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -29.78 -10.78 -40.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172504287.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.847 kcal (2) G-P(sol) polarization free energy of solvation -29.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds