Wall clock time and date at job start Tue Mar 31 2020 14:39:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47132 * 2 1 4 4 C 1.53008 * 109.47004 * 119.99617 * 2 1 3 5 5 C 1.53001 * 109.46954 * 182.85798 * 4 2 1 6 6 C 1.50703 * 109.47013 * 175.01851 * 5 4 2 7 7 H 1.08002 * 119.99716 * 0.02562 * 6 5 4 8 8 C 1.37875 * 119.99901 * 179.97438 * 6 5 4 9 9 N 1.31522 * 120.00089 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99899 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.46882 * 0.02562 * 10 8 6 12 12 H 1.48506 * 109.46614 * 120.00481 * 10 8 6 13 13 H 1.48499 * 109.47316 * 240.00294 * 10 8 6 14 14 N 1.46900 * 109.47278 * 239.99684 * 2 1 3 15 15 C 1.46893 * 111.00161 * 70.07638 * 14 2 1 16 16 C 1.46901 * 111.00079 * 306.11722 * 14 2 1 17 17 C 1.50698 * 109.47065 * 189.99854 * 16 14 2 18 18 C 1.38240 * 119.99299 * 269.72975 * 17 16 14 19 19 C 1.38214 * 120.01046 * 179.77182 * 18 17 16 20 20 C 1.38326 * 119.98832 * 0.50106 * 19 18 17 21 21 Br 1.89107 * 120.00969 * 179.72557 * 20 19 18 22 22 C 1.38330 * 119.98277 * 359.75372 * 20 19 18 23 23 C 1.38223 * 119.98451 * 359.97438 * 22 20 19 24 24 H 1.09006 * 109.46477 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47380 * 299.99801 * 1 2 3 26 26 H 1.08995 * 109.46993 * 60.00691 * 1 2 3 27 27 H 1.08997 * 109.46772 * 302.85256 * 4 2 1 28 28 H 1.08996 * 109.46813 * 62.85676 * 4 2 1 29 29 H 1.08995 * 109.46952 * 295.01908 * 5 4 2 30 30 H 1.09008 * 109.46984 * 55.02221 * 5 4 2 31 31 H 0.96991 * 119.99866 * 179.97438 * 9 8 6 32 32 H 1.09003 * 109.47052 * 53.53376 * 15 14 2 33 33 H 1.09004 * 109.47198 * 293.53959 * 15 14 2 34 34 H 1.08993 * 109.47336 * 173.53553 * 15 14 2 35 35 H 1.08993 * 109.47414 * 310.00414 * 16 14 2 36 36 H 1.08997 * 109.46579 * 70.00145 * 16 14 2 37 37 H 1.07999 * 119.99258 * 0.02562 * 18 17 16 38 38 H 1.07999 * 120.00793 * 180.23085 * 19 18 17 39 39 H 1.07994 * 120.00753 * 179.97438 * 22 20 19 40 40 H 1.07995 * 119.98840 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2494 5 6 3.5683 -0.6592 1.2858 6 6 4.0648 -1.2611 2.5751 7 1 3.3607 -1.6494 3.2962 8 6 5.4180 -1.3170 2.8337 9 7 6.2754 -0.8446 1.9554 10 14 6.0334 -2.0624 4.4322 11 1 4.8762 -2.5175 5.2439 12 1 6.9130 -3.2206 4.1318 13 1 6.8004 -1.0422 5.1912 14 7 2.0197 -0.6926 -1.1994 15 6 1.7546 0.0979 -2.4088 16 6 1.4331 -2.0349 -1.3086 17 6 2.1345 -2.8024 -2.3995 18 6 1.6609 -2.7477 -3.6971 19 6 2.3067 -3.4477 -4.6987 20 6 3.4209 -4.2113 -4.4007 21 35 4.3004 -5.1755 -5.7693 22 6 3.8914 -4.2699 -3.1012 23 6 3.2482 -3.5651 -2.1012 24 1 -0.3632 -1.0278 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 1.6355 -0.2377 2.1385 28 1 1.7191 -1.7625 1.2241 29 1 3.9748 -1.2187 0.4434 30 1 3.8914 0.3799 1.2218 31 1 7.2273 -0.8835 2.1375 32 1 2.1612 1.1014 -2.2834 33 1 0.6789 0.1597 -2.5739 34 1 2.2269 -0.3809 -3.2665 35 1 1.5503 -2.5609 -0.3612 36 1 0.3732 -1.9497 -1.5481 37 1 0.7886 -2.1547 -3.9289 38 1 1.9389 -3.4020 -5.7131 39 1 4.7610 -4.8663 -2.8680 40 1 3.6152 -3.6111 -1.0866 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172504287.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:41 Heat of formation + Delta-G solvation = 2.864306 kcal Electronic energy + Delta-G solvation = -19775.816321 eV Core-core repulsion = 16828.557088 eV Total energy + Delta-G solvation = -2947.259233 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 325.074 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.71531 -39.09646 -35.54135 -34.12555 -32.87368 -31.99791 -31.07881 -30.23121 -27.75168 -26.98606 -25.10310 -23.70835 -22.96556 -22.21820 -20.29219 -18.34991 -17.75273 -16.92443 -16.53208 -16.52708 -16.09853 -15.68756 -15.22014 -14.55068 -14.45894 -14.38225 -14.18771 -14.04048 -13.65619 -13.30425 -13.28259 -12.97510 -12.84251 -12.64721 -12.36236 -12.29963 -12.05532 -11.90240 -11.76795 -11.71838 -11.37879 -11.25550 -11.17359 -10.89314 -10.47715 -9.95754 -9.56963 -8.95874 -8.12241 -6.22534 0.09647 0.36952 0.63787 1.39876 1.40411 1.52971 2.44081 2.57405 3.20321 3.27863 3.79649 3.84839 3.98209 4.04429 4.23632 4.32728 4.38729 4.42020 4.54275 4.57309 4.69787 4.72406 4.76686 4.88486 5.01132 5.02168 5.06859 5.08590 5.14994 5.22470 5.26724 5.33785 5.48182 5.61500 5.64573 5.86458 5.92144 6.04623 6.29385 6.34132 6.37821 6.98154 7.45895 8.98880 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.012208 B = 0.003592 C = 0.002899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2293.120194 B = 7792.779041 C = 9657.422846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.087 3.913 3 H 0.067 0.933 4 C -0.093 4.093 5 C 0.043 3.957 6 C -0.540 4.540 7 H 0.055 0.945 8 C 0.002 3.998 9 N -0.931 5.931 10 Si 0.955 3.045 11 H -0.262 1.262 12 H -0.280 1.280 13 H -0.280 1.280 14 N -0.545 5.545 15 C 0.025 3.975 16 C 0.092 3.908 17 C -0.060 4.060 18 C -0.104 4.104 19 C -0.092 4.092 20 C -0.102 4.102 21 Br -0.052 7.052 22 C -0.100 4.100 23 C -0.107 4.107 24 H 0.062 0.938 25 H 0.064 0.936 26 H 0.067 0.933 27 H 0.051 0.949 28 H 0.051 0.949 29 H 0.002 0.998 30 H -0.024 1.024 31 H 0.260 0.740 32 H 0.059 0.941 33 H 0.046 0.954 34 H 0.067 0.933 35 H 0.072 0.928 36 H 0.066 0.934 37 H 0.154 0.846 38 H 0.154 0.846 39 H 0.131 0.869 40 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.896 -6.038 -17.233 21.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.021 4.021 3 H 0.085 0.915 4 C -0.130 4.130 5 C 0.006 3.994 6 C -0.578 4.578 7 H 0.073 0.927 8 C -0.195 4.195 9 N -0.572 5.572 10 Si 0.781 3.219 11 H -0.186 1.186 12 H -0.206 1.206 13 H -0.206 1.206 14 N -0.268 5.268 15 C -0.123 4.123 16 C -0.035 4.035 17 C -0.061 4.061 18 C -0.123 4.123 19 C -0.111 4.111 20 C -0.181 4.181 21 Br 0.033 6.967 22 C -0.120 4.120 23 C -0.127 4.127 24 H 0.081 0.919 25 H 0.083 0.917 26 H 0.086 0.914 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.021 0.979 30 H -0.005 1.005 31 H 0.069 0.931 32 H 0.078 0.922 33 H 0.064 0.936 34 H 0.086 0.914 35 H 0.091 0.909 36 H 0.084 0.916 37 H 0.171 0.829 38 H 0.171 0.829 39 H 0.149 0.851 40 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -10.886 -6.418 -17.720 21.765 hybrid contribution 0.099 0.048 1.259 1.263 sum -10.787 -6.370 -16.462 20.686 Atomic orbital electron populations 1.22373 0.95579 1.02513 1.02752 1.21706 0.93531 0.97186 0.89704 0.91518 1.21556 0.96757 0.99082 0.95637 1.18769 0.91845 0.94054 0.94711 1.21842 0.92128 1.39039 1.04839 0.92688 1.25887 0.97431 0.96122 1.00076 1.70132 1.02154 1.47922 1.36976 0.85547 0.78458 0.78138 0.79799 1.18621 1.20596 1.20586 1.61998 1.59627 1.02260 1.02956 1.22432 0.99796 0.97752 0.92281 1.21092 0.96029 0.89418 0.96919 1.20037 0.95119 0.95611 0.95348 1.21273 1.00749 0.99189 0.91055 1.21309 0.93576 0.95283 1.00947 1.21878 0.99928 1.03188 0.93110 1.96671 1.78387 1.73350 1.48247 1.21184 0.99962 0.99418 0.91458 1.21155 0.95524 0.96649 0.99374 0.91942 0.91661 0.91389 0.93079 0.93062 0.97927 1.00514 0.93136 0.92226 0.93589 0.91443 0.90941 0.91594 0.82873 0.82850 0.85084 0.86895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.08 8.45 71.98 0.61 -3.47 16 2 C 0.09 2.78 2.33 44.92 0.10 2.88 16 3 H 0.07 2.28 7.98 -2.39 -0.02 2.27 16 4 C -0.09 -3.72 4.53 30.60 0.14 -3.58 16 5 C 0.04 2.31 4.78 29.85 0.14 2.45 16 6 C -0.54 -31.16 9.11 25.60 0.23 -30.92 16 7 H 0.05 3.05 7.74 -2.91 -0.02 3.03 16 8 C 0.00 0.13 5.46 84.65 0.46 0.60 16 9 N -0.93 -57.96 13.29 21.45 0.28 -57.68 16 10 Si 0.96 45.06 29.54 68.60 2.03 47.09 16 11 H -0.26 -11.76 7.11 99.48 0.71 -11.06 16 12 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 13 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 14 N -0.54 -16.98 4.15 -901.64 -3.75 -20.73 16 15 C 0.03 0.62 8.75 127.69 1.12 1.74 16 16 C 0.09 2.53 4.06 85.56 0.35 2.88 16 17 C -0.06 -1.63 4.87 -19.86 -0.10 -1.72 16 18 C -0.10 -2.19 8.05 22.26 0.18 -2.01 16 19 C -0.09 -1.91 9.79 22.29 0.22 -1.69 16 20 C -0.10 -2.47 6.22 22.31 0.14 -2.34 16 21 Br -0.05 -1.11 33.70 -20.37 -0.69 -1.80 16 22 C -0.10 -2.81 9.79 22.29 0.22 -2.59 16 23 C -0.11 -3.33 9.70 22.27 0.22 -3.12 16 24 H 0.06 1.39 6.55 -2.38 -0.02 1.37 16 25 H 0.06 1.47 8.14 -2.39 -0.02 1.46 16 26 H 0.07 1.35 6.83 -2.39 -0.02 1.33 16 27 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 28 H 0.05 2.00 6.25 -2.39 -0.01 1.98 16 29 H 0.00 0.13 7.84 -2.39 -0.02 0.11 16 30 H -0.02 -1.39 8.14 -2.38 -0.02 -1.41 16 31 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 32 H 0.06 1.53 8.00 -2.39 -0.02 1.51 16 33 H 0.05 0.89 6.88 -2.38 -0.02 0.88 16 34 H 0.07 1.63 6.34 -2.39 -0.02 1.62 16 35 H 0.07 2.28 5.98 -2.39 -0.01 2.26 16 36 H 0.07 1.45 6.75 -2.39 -0.02 1.44 16 37 H 0.15 2.35 8.04 -2.91 -0.02 2.33 16 38 H 0.15 2.37 8.06 -2.91 -0.02 2.35 16 39 H 0.13 3.50 8.06 -2.91 -0.02 3.48 16 40 H 0.11 4.02 8.06 -2.91 -0.02 4.00 16 Total: -1.00 -65.93 340.00 2.92 -63.01 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: 1.01 Total: 10.99 kcal Atomic # 6 Polarization: -44.91 SS G_CDS: 4.03 Total: -40.89 kcal Atomic # 7 Polarization: -74.94 SS G_CDS: -3.46 Total: -78.41 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Atomic # 35 Polarization: -1.11 SS G_CDS: -0.69 Total: -1.80 kcal Total: -65.93 2.92 -63.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172504287.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.877 kcal (2) G-P(sol) polarization free energy of solvation -65.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds