Wall clock time and date at job start Tue Mar 31 2020 14:01:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38235 * 120.00205 * 2 1 4 4 C 1.38223 * 120.00676 * 180.02562 * 3 2 1 5 5 C 1.38255 * 120.02140 * 359.97438 * 4 3 2 6 6 C 1.38197 * 120.01078 * 359.75091 * 5 4 3 7 7 C 1.50704 * 120.00470 * 180.25367 * 6 5 4 8 8 N 1.46905 * 109.46773 * 260.24911 * 7 6 5 9 9 C 1.46899 * 110.99686 * 179.97438 * 8 7 6 10 10 C 1.52995 * 109.47139 * 180.02562 * 9 8 7 11 11 C 1.52995 * 109.47128 * 300.00276 * 10 9 8 12 12 C 1.53002 * 109.47277 * 60.00144 * 10 9 8 13 13 C 1.50701 * 109.47379 * 180.02562 * 10 9 8 14 14 H 1.08003 * 119.99458 * 359.97438 * 13 10 9 15 15 C 1.37878 * 120.00103 * 180.02562 * 13 10 9 16 16 N 1.31514 * 120.00095 * 359.97438 * 15 13 10 17 17 Si 1.86799 * 119.99879 * 179.97438 * 15 13 10 18 18 H 1.48503 * 109.47101 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.47192 * 119.99922 * 17 15 13 20 20 H 1.48497 * 109.47312 * 239.99831 * 17 15 13 21 21 C 1.38308 * 120.00544 * 180.02562 * 2 1 3 22 22 Br 1.89100 * 120.00943 * 359.95772 * 21 2 1 23 23 H 1.09006 * 109.47074 * 269.97622 * 1 2 3 24 24 H 1.08989 * 109.47087 * 29.98008 * 1 2 3 25 25 H 1.09007 * 109.46754 * 149.98183 * 1 2 3 26 26 H 1.08004 * 120.00031 * 0.03915 * 3 2 1 27 27 H 1.08001 * 119.98533 * 180.02562 * 4 3 2 28 28 H 1.08005 * 119.99349 * 179.97438 * 5 4 3 29 29 H 1.08993 * 109.47301 * 20.25079 * 7 6 5 30 30 H 1.08999 * 109.47007 * 140.25112 * 7 6 5 31 31 H 1.00904 * 110.99844 * 56.04999 * 8 7 6 32 32 H 1.08996 * 109.47658 * 300.00428 * 9 8 7 33 33 H 1.09003 * 109.47182 * 60.00081 * 9 8 7 34 34 H 1.09002 * 109.47326 * 60.00136 * 11 10 9 35 35 H 1.09008 * 109.47240 * 179.97438 * 11 10 9 36 36 H 1.08997 * 109.47532 * 299.99833 * 11 10 9 37 37 H 1.09002 * 109.46965 * 59.99942 * 12 10 9 38 38 H 1.08999 * 109.47337 * 180.02562 * 12 10 9 39 39 H 1.08994 * 109.47019 * 300.00475 * 12 10 9 40 40 H 0.97000 * 119.99781 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1971 0.0000 4 6 3.5805 1.1972 -0.0005 5 6 4.2723 0.0002 -0.0005 6 6 3.5821 -1.1970 0.0052 7 6 4.3364 -2.5017 0.0110 8 7 4.3779 -3.0493 -1.3516 9 6 5.1076 -4.3238 -1.3847 10 6 5.1302 -4.8615 -2.8168 11 6 3.6959 -5.0823 -3.3013 12 6 5.8271 -3.8510 -3.7301 13 6 5.8782 -6.1693 -2.8507 14 1 6.2962 -6.5760 -1.9417 15 6 6.0300 -6.8460 -4.0424 16 7 5.5215 -6.3505 -5.1494 17 14 6.9579 -8.4667 -4.0845 18 1 7.4268 -8.8043 -2.7165 19 1 6.0576 -9.5399 -4.5775 20 1 8.1263 -8.3448 -4.9928 21 6 2.1987 -1.1977 -0.0005 22 35 1.2536 -2.8356 -0.0001 23 1 -0.3633 -0.0004 1.0277 24 1 -0.3633 0.8901 -0.5135 25 1 -0.3633 -0.8899 -0.5142 26 1 1.6583 2.1325 0.0006 27 1 4.1202 2.1327 -0.0001 28 1 5.3524 0.0009 -0.0014 29 1 5.3530 -2.3321 0.3656 30 1 3.8344 -3.2087 0.6715 31 1 4.7808 -2.3854 -1.9959 32 1 6.1296 -4.1665 -1.0399 33 1 4.6114 -5.0436 -0.7337 34 1 3.1544 -4.1366 -3.2768 35 1 3.7119 -5.4650 -4.3219 36 1 3.1993 -5.8022 -2.6508 37 1 6.8490 -3.6937 -3.3850 38 1 5.8428 -4.2338 -4.7506 39 1 5.2857 -2.9053 -3.7055 40 1 5.6280 -6.8268 -5.9877 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001178922239.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:52 Heat of formation + Delta-G solvation = 16.539452 kcal Electronic energy + Delta-G solvation = -19783.334264 eV Core-core repulsion = 16836.668030 eV Total energy + Delta-G solvation = -2946.666234 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 325.074 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.62701 -36.88327 -34.45819 -33.02821 -32.03759 -30.53210 -29.23216 -26.95347 -25.68753 -25.50180 -25.12260 -23.04740 -21.75679 -20.61782 -18.40228 -16.52403 -16.07865 -15.82700 -15.19126 -14.59085 -14.39707 -14.21412 -13.70681 -13.56977 -13.18051 -12.63354 -12.50792 -12.44295 -12.16850 -11.98363 -11.77661 -11.33501 -11.07950 -10.99601 -10.93908 -10.67178 -10.57415 -10.52190 -10.13138 -10.01761 -9.67289 -9.32844 -9.08184 -8.73904 -8.57901 -8.52406 -8.25186 -7.63942 -5.87446 -3.97591 1.10928 1.21764 1.88237 3.32436 3.40816 3.44267 3.53972 4.46884 4.63950 4.66499 4.79107 5.10821 5.13166 5.30693 5.38057 5.38829 5.47255 5.50652 5.70461 5.75470 5.93064 6.06176 6.26568 6.31071 6.36545 6.41205 6.49838 6.77123 6.78187 6.93792 7.13235 7.22402 7.46502 7.53491 7.76289 7.80713 7.88235 8.00892 8.26336 8.40150 8.60472 9.04153 9.67213 11.12967 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.022773 B = 0.003785 C = 0.003491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.234922 B = 7395.817452 C = 8018.383090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.063 4.063 3 C -0.123 4.123 4 C -0.105 4.105 5 C -0.118 4.118 6 C -0.044 4.044 7 C 0.088 3.912 8 N -0.671 5.671 9 C 0.078 3.922 10 C 0.070 3.930 11 C -0.116 4.116 12 C -0.131 4.131 13 C -0.505 4.505 14 H 0.052 0.948 15 C 0.065 3.935 16 N -0.884 5.884 17 Si 0.887 3.113 18 H -0.275 1.275 19 H -0.285 1.285 20 H -0.286 1.286 21 C -0.071 4.071 22 Br -0.033 7.033 23 H 0.074 0.926 24 H 0.069 0.931 25 H 0.078 0.922 26 H 0.126 0.874 27 H 0.125 0.875 28 H 0.127 0.873 29 H 0.033 0.967 30 H 0.084 0.916 31 H 0.337 0.663 32 H 0.012 0.988 33 H 0.057 0.943 34 H 0.021 0.979 35 H 0.072 0.928 36 H 0.017 0.983 37 H 0.018 0.982 38 H 0.082 0.918 39 H 0.010 0.990 40 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.680 15.028 11.607 20.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.065 4.065 3 C -0.142 4.142 4 C -0.123 4.123 5 C -0.138 4.138 6 C -0.046 4.046 7 C -0.042 4.042 8 N -0.303 5.303 9 C -0.050 4.050 10 C 0.069 3.931 11 C -0.174 4.174 12 C -0.189 4.189 13 C -0.543 4.543 14 H 0.070 0.930 15 C -0.136 4.136 16 N -0.523 5.523 17 Si 0.715 3.285 18 H -0.200 1.200 19 H -0.211 1.211 20 H -0.212 1.212 21 C -0.151 4.151 22 Br 0.053 6.947 23 H 0.092 0.908 24 H 0.088 0.912 25 H 0.096 0.904 26 H 0.144 0.856 27 H 0.143 0.857 28 H 0.144 0.856 29 H 0.051 0.949 30 H 0.102 0.898 31 H 0.156 0.844 32 H 0.030 0.970 33 H 0.076 0.924 34 H 0.040 0.960 35 H 0.090 0.910 36 H 0.036 0.964 37 H 0.037 0.963 38 H 0.101 0.899 39 H 0.029 0.971 40 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -9.664 14.026 11.464 20.532 hybrid contribution 1.792 -0.178 0.045 1.801 sum -7.872 13.848 11.509 19.652 Atomic orbital electron populations 1.20975 0.90549 1.03688 1.02810 1.19802 0.96477 0.91700 0.98543 1.20955 0.94237 0.96973 1.02020 1.21176 0.94262 0.98034 0.98878 1.21072 1.00040 0.91540 1.01135 1.19876 0.92021 0.95918 0.96811 1.21016 0.97094 0.92003 0.94053 1.60622 1.58978 1.06508 1.04207 1.22155 0.93163 0.88713 1.01009 1.18083 0.93726 0.93269 0.88013 1.21605 0.96026 0.97497 1.02292 1.21826 0.96753 0.96006 1.04339 1.21152 1.34120 1.05203 0.93870 0.93005 1.24878 0.95605 0.97335 0.95752 1.69852 1.45381 1.38374 0.98701 0.86625 0.79673 0.84278 0.77896 1.19975 1.21146 1.21218 1.21672 0.94202 0.91753 1.07509 1.96700 1.73956 1.26749 1.97251 0.90750 0.91248 0.90353 0.85626 0.85717 0.85553 0.94905 0.89810 0.84415 0.96990 0.92440 0.95960 0.90959 0.96395 0.96330 0.89886 0.97073 0.93313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.18 9.55 36.01 0.34 -0.84 16 2 C -0.06 -0.75 5.88 -104.60 -0.62 -1.36 16 3 C -0.12 -1.27 9.70 -39.59 -0.38 -1.65 16 4 C -0.11 -1.08 10.05 -39.58 -0.40 -1.48 16 5 C -0.12 -1.41 9.67 -39.59 -0.38 -1.79 16 6 C -0.04 -0.61 5.39 -104.60 -0.56 -1.17 16 7 C 0.09 1.33 5.14 -4.97 -0.03 1.31 16 8 N -0.67 -12.05 5.70 -115.06 -0.66 -12.71 16 9 C 0.08 1.62 4.59 -3.83 -0.02 1.61 16 10 C 0.07 1.69 0.57 -155.66 -0.09 1.60 16 11 C -0.12 -2.88 8.09 37.16 0.30 -2.58 16 12 C -0.13 -3.13 7.92 37.16 0.29 -2.83 16 13 C -0.50 -13.67 8.01 -34.44 -0.28 -13.94 16 14 H 0.05 1.41 7.74 -52.48 -0.41 1.00 16 15 C 0.07 1.78 5.15 -17.82 -0.09 1.68 16 16 N -0.88 -24.69 9.35 55.43 0.52 -24.17 16 17 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 18 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 19 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 21 C -0.07 -0.99 6.22 -39.52 -0.25 -1.23 16 22 Br -0.03 -0.47 30.10 -68.01 -2.05 -2.52 16 23 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 24 H 0.07 0.55 8.08 -51.94 -0.42 0.13 16 25 H 0.08 0.82 6.65 -51.93 -0.35 0.47 16 26 H 0.13 0.97 8.06 -52.48 -0.42 0.55 16 27 H 0.12 0.96 8.06 -52.49 -0.42 0.53 16 28 H 0.13 1.32 8.04 -52.48 -0.42 0.90 16 29 H 0.03 0.47 8.01 -51.93 -0.42 0.06 16 30 H 0.08 1.31 7.15 -51.93 -0.37 0.94 16 31 H 0.34 6.09 6.76 -39.29 -0.27 5.83 16 32 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.02 0.51 7.60 -51.93 -0.39 0.11 16 35 H 0.07 1.96 6.07 -51.92 -0.32 1.65 16 36 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.08 2.20 6.07 -51.93 -0.32 1.88 16 39 H 0.01 0.23 6.57 -51.93 -0.34 -0.11 16 40 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 335.82 15.07 5.06 5.06 Total: -1.00 -28.06 335.82 -10.40 -38.46 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -6.11 Total: 2.31 kcal Atomic # 6 Polarization: -20.54 SS G_CDS: -2.15 Total: -22.69 kcal Atomic # 7 Polarization: -36.74 SS G_CDS: -0.14 Total: -36.88 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 35 Polarization: -0.47 SS G_CDS: -2.05 Total: -2.52 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -28.06 -10.40 -38.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178922239.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.001 kcal (2) G-P(sol) polarization free energy of solvation -28.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.462 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds