Wall clock time and date at job start Tue Mar 31 2020 14:01:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38235 * 120.00205 * 2 1 4 4 C 1.38223 * 120.00676 * 180.02562 * 3 2 1 5 5 C 1.38255 * 120.02140 * 359.97438 * 4 3 2 6 6 C 1.38197 * 120.01078 * 359.75091 * 5 4 3 7 7 C 1.50704 * 120.00470 * 180.25367 * 6 5 4 8 8 N 1.46905 * 109.46773 * 260.24911 * 7 6 5 9 9 C 1.46899 * 110.99686 * 179.97438 * 8 7 6 10 10 C 1.52995 * 109.47139 * 180.02562 * 9 8 7 11 11 C 1.52995 * 109.47128 * 300.00276 * 10 9 8 12 12 C 1.53002 * 109.47277 * 60.00144 * 10 9 8 13 13 C 1.50701 * 109.47379 * 180.02562 * 10 9 8 14 14 H 1.08003 * 119.99458 * 359.97438 * 13 10 9 15 15 C 1.37878 * 120.00103 * 180.02562 * 13 10 9 16 16 N 1.31514 * 120.00095 * 359.97438 * 15 13 10 17 17 Si 1.86799 * 119.99879 * 179.97438 * 15 13 10 18 18 H 1.48503 * 109.47101 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.47192 * 119.99922 * 17 15 13 20 20 H 1.48497 * 109.47312 * 239.99831 * 17 15 13 21 21 C 1.38308 * 120.00544 * 180.02562 * 2 1 3 22 22 Br 1.89100 * 120.00943 * 359.95772 * 21 2 1 23 23 H 1.09006 * 109.47074 * 269.97622 * 1 2 3 24 24 H 1.08989 * 109.47087 * 29.98008 * 1 2 3 25 25 H 1.09007 * 109.46754 * 149.98183 * 1 2 3 26 26 H 1.08004 * 120.00031 * 0.03915 * 3 2 1 27 27 H 1.08001 * 119.98533 * 180.02562 * 4 3 2 28 28 H 1.08005 * 119.99349 * 179.97438 * 5 4 3 29 29 H 1.08993 * 109.47301 * 20.25079 * 7 6 5 30 30 H 1.08999 * 109.47007 * 140.25112 * 7 6 5 31 31 H 1.00904 * 110.99844 * 56.04999 * 8 7 6 32 32 H 1.08996 * 109.47658 * 300.00428 * 9 8 7 33 33 H 1.09003 * 109.47182 * 60.00081 * 9 8 7 34 34 H 1.09002 * 109.47326 * 60.00136 * 11 10 9 35 35 H 1.09008 * 109.47240 * 179.97438 * 11 10 9 36 36 H 1.08997 * 109.47532 * 299.99833 * 11 10 9 37 37 H 1.09002 * 109.46965 * 59.99942 * 12 10 9 38 38 H 1.08999 * 109.47337 * 180.02562 * 12 10 9 39 39 H 1.08994 * 109.47019 * 300.00475 * 12 10 9 40 40 H 0.97000 * 119.99781 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1971 0.0000 4 6 3.5805 1.1972 -0.0005 5 6 4.2723 0.0002 -0.0005 6 6 3.5821 -1.1970 0.0052 7 6 4.3364 -2.5017 0.0110 8 7 4.3779 -3.0493 -1.3516 9 6 5.1076 -4.3238 -1.3847 10 6 5.1302 -4.8615 -2.8168 11 6 3.6959 -5.0823 -3.3013 12 6 5.8271 -3.8510 -3.7301 13 6 5.8782 -6.1693 -2.8507 14 1 6.2962 -6.5760 -1.9417 15 6 6.0300 -6.8460 -4.0424 16 7 5.5215 -6.3505 -5.1494 17 14 6.9579 -8.4667 -4.0845 18 1 7.4268 -8.8043 -2.7165 19 1 6.0576 -9.5399 -4.5775 20 1 8.1263 -8.3448 -4.9928 21 6 2.1987 -1.1977 -0.0005 22 35 1.2536 -2.8356 -0.0001 23 1 -0.3633 -0.0004 1.0277 24 1 -0.3633 0.8901 -0.5135 25 1 -0.3633 -0.8899 -0.5142 26 1 1.6583 2.1325 0.0006 27 1 4.1202 2.1327 -0.0001 28 1 5.3524 0.0009 -0.0014 29 1 5.3530 -2.3321 0.3656 30 1 3.8344 -3.2087 0.6715 31 1 4.7808 -2.3854 -1.9959 32 1 6.1296 -4.1665 -1.0399 33 1 4.6114 -5.0436 -0.7337 34 1 3.1544 -4.1366 -3.2768 35 1 3.7119 -5.4650 -4.3219 36 1 3.1993 -5.8022 -2.6508 37 1 6.8490 -3.6937 -3.3850 38 1 5.8428 -4.2338 -4.7506 39 1 5.2857 -2.9053 -3.7055 40 1 5.6280 -6.8268 -5.9877 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001178922239.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:52 Heat of formation + Delta-G solvation = 2.759021 kcal Electronic energy + Delta-G solvation = -19783.931828 eV Core-core repulsion = 16836.668030 eV Total energy + Delta-G solvation = -2947.263799 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 325.074 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.54247 -38.56955 -35.94110 -33.99927 -33.49158 -32.06806 -30.30455 -27.77609 -27.48212 -27.24991 -26.96077 -24.59603 -22.63829 -21.59504 -20.30936 -17.94630 -17.40069 -17.05851 -16.72382 -16.05113 -15.72480 -15.44015 -14.97912 -14.76484 -14.22602 -14.15176 -13.97373 -13.80285 -13.36431 -13.13425 -13.03592 -13.01521 -12.77705 -12.50694 -12.48333 -12.18543 -12.06607 -12.03722 -11.87225 -11.66554 -11.28753 -10.94465 -10.72564 -10.56816 -10.33165 -9.65969 -9.48525 -9.09641 -7.95149 -6.11824 0.21242 0.33399 0.89097 1.41159 1.44556 1.53879 2.47121 2.65632 3.26963 3.54050 3.75442 3.85458 4.07960 4.33469 4.40098 4.43250 4.53137 4.63178 4.67571 4.76780 4.80557 4.85855 4.90508 4.98852 5.05578 5.19935 5.26574 5.31601 5.41681 5.46512 5.48377 5.53232 5.56976 5.71781 5.79567 5.95281 6.17786 6.26525 6.35997 6.51037 6.65199 6.97994 7.55625 9.03097 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.022773 B = 0.003785 C = 0.003491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.234922 B = 7395.817452 C = 8018.383090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.073 4.073 3 C -0.119 4.119 4 C -0.100 4.100 5 C -0.125 4.125 6 C -0.064 4.064 7 C 0.093 3.907 8 N -0.672 5.672 9 C 0.094 3.906 10 C 0.061 3.939 11 C -0.099 4.099 12 C -0.118 4.118 13 C -0.524 4.524 14 H 0.044 0.956 15 C 0.022 3.978 16 N -0.903 5.903 17 Si 0.943 3.057 18 H -0.272 1.272 19 H -0.284 1.284 20 H -0.282 1.282 21 C -0.091 4.091 22 Br -0.053 7.053 23 H 0.084 0.916 24 H 0.089 0.911 25 H 0.064 0.936 26 H 0.157 0.843 27 H 0.156 0.844 28 H 0.139 0.861 29 H 0.043 0.957 30 H 0.074 0.926 31 H 0.337 0.663 32 H 0.011 0.989 33 H 0.046 0.954 34 H 0.032 0.968 35 H 0.046 0.954 36 H 0.006 0.994 37 H 0.018 0.982 38 H 0.054 0.946 39 H 0.031 0.969 40 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.577 17.074 12.344 22.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.075 4.075 3 C -0.137 4.137 4 C -0.118 4.118 5 C -0.144 4.144 6 C -0.066 4.066 7 C -0.036 4.036 8 N -0.303 5.303 9 C -0.035 4.035 10 C 0.061 3.939 11 C -0.157 4.157 12 C -0.176 4.176 13 C -0.563 4.563 14 H 0.062 0.938 15 C -0.176 4.176 16 N -0.543 5.543 17 Si 0.770 3.230 18 H -0.197 1.197 19 H -0.211 1.211 20 H -0.208 1.208 21 C -0.172 4.172 22 Br 0.033 6.967 23 H 0.103 0.897 24 H 0.108 0.892 25 H 0.083 0.917 26 H 0.175 0.825 27 H 0.174 0.826 28 H 0.157 0.843 29 H 0.061 0.939 30 H 0.093 0.907 31 H 0.156 0.844 32 H 0.029 0.971 33 H 0.065 0.935 34 H 0.051 0.949 35 H 0.064 0.936 36 H 0.026 0.974 37 H 0.037 0.963 38 H 0.073 0.927 39 H 0.050 0.950 40 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -9.562 16.082 12.212 22.343 hybrid contribution 1.731 -0.712 -0.159 1.878 sum -7.832 15.370 12.053 21.044 Atomic orbital electron populations 1.21007 0.89268 1.04042 1.03591 1.20136 0.97641 0.91556 0.98147 1.21369 0.94543 0.97534 1.00290 1.21566 0.94501 0.98638 0.97123 1.21295 1.00833 0.91431 1.00835 1.19798 0.92097 0.95786 0.98967 1.20948 0.97837 0.92756 0.92053 1.60504 1.58185 1.05544 1.06099 1.21787 0.93329 0.89962 0.98397 1.18124 0.92888 0.92740 0.90172 1.21407 0.96624 0.97414 1.00293 1.21638 0.97012 0.96640 1.02351 1.21461 1.34543 1.06604 0.93664 0.93751 1.25522 0.96427 1.00129 0.95565 1.69982 1.46005 1.39318 0.98953 0.85737 0.78541 0.80819 0.77866 1.19660 1.21058 1.20816 1.21823 0.94358 0.91768 1.09206 1.96668 1.74369 1.28260 1.97403 0.89706 0.89217 0.91662 0.82545 0.82590 0.84319 0.93927 0.90723 0.84366 0.97124 0.93515 0.94948 0.93560 0.97435 0.96324 0.92688 0.94980 0.93402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.11 9.55 71.24 0.68 -1.42 16 2 C -0.07 -1.57 5.88 -19.85 -0.12 -1.69 16 3 C -0.12 -2.03 9.70 22.27 0.22 -1.81 16 4 C -0.10 -1.70 10.05 22.27 0.22 -1.47 16 5 C -0.12 -2.66 9.67 22.26 0.22 -2.44 16 6 C -0.06 -1.70 5.39 -19.85 -0.11 -1.81 16 7 C 0.09 2.77 5.14 85.56 0.44 3.20 16 8 N -0.67 -23.74 5.70 -517.94 -2.95 -26.69 16 9 C 0.09 3.93 4.59 86.30 0.40 4.32 16 10 C 0.06 2.99 0.57 -52.93 -0.03 2.96 16 11 C -0.10 -4.99 8.09 71.98 0.58 -4.41 16 12 C -0.12 -5.62 7.92 71.98 0.57 -5.05 16 13 C -0.52 -28.61 8.01 25.60 0.21 -28.41 16 14 H 0.04 2.43 7.74 -2.91 -0.02 2.41 16 15 C 0.02 1.23 5.15 84.65 0.44 1.67 16 16 N -0.90 -51.03 9.35 21.45 0.20 -50.83 16 17 Si 0.94 43.85 29.54 68.60 2.03 45.88 16 18 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 19 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 20 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 21 C -0.09 -2.44 6.22 22.31 0.14 -2.30 16 22 Br -0.05 -1.54 30.10 -20.37 -0.61 -2.15 16 23 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 24 H 0.09 1.15 8.08 -2.39 -0.02 1.13 16 25 H 0.06 1.30 6.65 -2.38 -0.02 1.29 16 26 H 0.16 1.68 8.06 -2.91 -0.02 1.65 16 27 H 0.16 1.65 8.06 -2.91 -0.02 1.62 16 28 H 0.14 2.53 8.04 -2.91 -0.02 2.50 16 29 H 0.04 1.18 8.01 -2.39 -0.02 1.16 16 30 H 0.07 2.34 7.15 -2.39 -0.02 2.32 16 31 H 0.34 11.83 6.76 -89.69 -0.61 11.22 16 32 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 33 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.03 1.50 7.60 -2.39 -0.02 1.49 16 35 H 0.05 2.55 6.07 -2.38 -0.01 2.54 16 36 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 37 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.05 2.93 6.07 -2.39 -0.01 2.91 16 39 H 0.03 1.34 6.57 -2.39 -0.02 1.32 16 40 H 0.26 13.92 8.31 -92.71 -0.77 13.15 16 Total: -1.00 -60.12 335.82 2.93 -57.19 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: 0.42 Total: 15.25 kcal Atomic # 6 Polarization: -42.50 SS G_CDS: 3.85 Total: -38.65 kcal Atomic # 7 Polarization: -74.77 SS G_CDS: -2.75 Total: -77.52 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Atomic # 35 Polarization: -1.54 SS G_CDS: -0.61 Total: -2.15 kcal Total: -60.12 2.93 -57.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178922239.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.948 kcal (2) G-P(sol) polarization free energy of solvation -60.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.189 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds