Wall clock time and date at job start Tue Mar 31 2020 14:47:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46900 * 109.47069 * 2 1 4 4 C 1.46905 * 110.99591 * 199.75232 * 3 2 1 5 5 C 1.50697 * 109.46963 * 66.04670 * 4 3 2 6 6 H 1.08004 * 120.00372 * 359.97438 * 5 4 3 7 7 C 1.37881 * 120.00116 * 180.02562 * 5 4 3 8 8 N 1.31520 * 119.99699 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00375 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47110 * 59.99656 * 9 7 5 11 11 H 1.48501 * 109.47098 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.46853 * 299.99679 * 9 7 5 13 13 C 1.46902 * 111.00228 * 75.80010 * 3 2 1 14 14 C 1.52992 * 109.47138 * 199.64418 * 13 3 2 15 15 C 1.52997 * 109.47268 * 174.87480 * 14 13 3 16 16 C 1.50698 * 109.47520 * 180.02562 * 15 14 13 17 17 C 1.38239 * 119.99064 * 270.30113 * 16 15 14 18 18 C 1.38218 * 120.01041 * 180.25274 * 17 16 15 19 19 C 1.38325 * 119.98783 * 359.46633 * 18 17 16 20 20 Br 1.89103 * 120.01097 * 180.27663 * 19 18 17 21 21 C 1.38324 * 119.98075 * 0.25710 * 19 18 17 22 22 C 1.38218 * 119.98979 * 359.97438 * 21 19 18 23 23 H 1.08996 * 109.46982 * 174.85166 * 1 2 3 24 24 H 1.08997 * 109.46891 * 294.85463 * 1 2 3 25 25 H 1.09004 * 109.46966 * 54.85151 * 1 2 3 26 26 H 1.09000 * 109.47139 * 239.99778 * 2 1 3 27 27 H 1.09007 * 109.46826 * 119.99957 * 2 1 3 28 28 H 1.09001 * 109.46752 * 186.04512 * 4 3 2 29 29 H 1.09002 * 109.47262 * 306.04535 * 4 3 2 30 30 H 0.97000 * 120.00184 * 179.97438 * 8 7 5 31 31 H 1.09003 * 109.47073 * 79.64222 * 13 3 2 32 32 H 1.09000 * 109.46544 * 319.64705 * 13 3 2 33 33 H 1.09006 * 109.46936 * 54.87565 * 14 13 3 34 34 H 1.08997 * 109.47204 * 294.87690 * 14 13 3 35 35 H 1.09003 * 109.47277 * 59.99669 * 15 14 13 36 36 H 1.09006 * 109.47161 * 300.00315 * 15 14 13 37 37 H 1.07996 * 119.99562 * 359.97046 * 17 16 15 38 38 H 1.07996 * 120.00978 * 179.74204 * 18 17 16 39 39 H 1.08006 * 120.00482 * 180.02562 * 21 19 18 40 40 H 1.08001 * 119.99271 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4121 1.4510 -0.4635 5 6 3.4784 1.0473 -1.9139 6 1 2.5765 0.7690 -2.4388 7 6 4.6907 1.0320 -2.5706 8 7 5.7891 1.3704 -1.9313 9 14 4.7728 0.5323 -4.3686 10 1 3.9380 1.4561 -5.1778 11 1 6.1804 0.5989 -4.8371 12 1 4.2652 -0.8550 -4.5204 13 6 1.8780 1.9935 1.3295 14 6 1.9210 3.5174 1.2001 15 6 1.6460 4.1530 2.5644 16 6 1.6877 5.6540 2.4368 17 6 2.8806 6.3297 2.6141 18 6 2.9183 7.7069 2.5024 19 6 1.7642 8.4080 2.2023 20 35 1.8166 10.2914 2.0415 21 6 0.5720 7.7309 2.0193 22 6 0.5343 6.3542 2.1360 23 1 -0.3633 -1.0235 -0.0922 24 1 -0.3633 0.4319 0.9325 25 1 -0.3633 0.5916 -0.8403 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8901 28 1 3.7841 2.4696 -0.3525 29 1 4.0254 0.7735 0.1307 30 1 6.6421 1.3593 -2.3931 31 1 2.6942 1.6601 1.9705 32 1 0.9261 1.6926 1.7671 33 1 1.1626 3.8430 0.4881 34 1 2.9057 3.8245 0.8480 35 1 2.4044 3.8273 3.2764 36 1 0.6612 3.8458 2.9165 37 1 3.7824 5.7819 2.8444 38 1 3.8494 8.2351 2.6449 39 1 -0.3293 8.2779 1.7846 40 1 -0.3965 5.8255 1.9928 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001207322212.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:19 Heat of formation + Delta-G solvation = -5.750939 kcal Electronic energy + Delta-G solvation = -19022.542958 eV Core-core repulsion = 16074.910140 eV Total energy + Delta-G solvation = -2947.632818 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 325.074 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.40711 -38.81081 -35.60396 -34.67981 -32.78543 -32.00894 -31.48767 -30.30459 -28.34872 -26.00104 -24.34230 -23.78595 -23.09519 -21.64661 -21.23100 -18.57365 -17.58753 -16.97439 -16.59050 -16.23233 -15.90834 -15.74831 -15.48785 -14.86558 -14.42437 -14.37438 -14.25401 -14.14018 -13.84856 -13.23749 -13.02623 -12.79420 -12.75992 -12.55992 -12.43729 -12.31964 -12.19641 -11.97527 -11.74918 -11.67813 -11.57614 -11.27982 -11.26589 -11.12957 -10.58760 -9.98399 -9.50410 -8.95919 -8.19559 -6.29007 0.10426 0.35226 0.64064 1.40373 1.43521 1.51295 2.40547 2.62368 3.12691 3.34030 3.79408 3.83352 3.98054 4.10165 4.26532 4.35953 4.41259 4.42093 4.52358 4.65053 4.68032 4.71832 4.78818 4.82666 4.96583 5.00350 5.07598 5.11881 5.21135 5.23071 5.27638 5.28449 5.37606 5.46873 5.50534 5.65160 5.68187 5.87645 6.10324 6.41762 6.72455 6.88057 7.40465 8.91233 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.014713 B = 0.002619 C = 0.002348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.628144 B =10688.010383 C =11920.514474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.052 3.948 3 N -0.546 5.546 4 C 0.210 3.790 5 C -0.523 4.523 6 H 0.061 0.939 7 C 0.002 3.998 8 N -0.935 5.935 9 Si 0.966 3.034 10 H -0.269 1.269 11 H -0.283 1.283 12 H -0.267 1.267 13 C 0.056 3.944 14 C -0.095 4.095 15 C -0.072 4.072 16 C -0.067 4.067 17 C -0.124 4.124 18 C -0.098 4.098 19 C -0.110 4.110 20 Br -0.054 7.054 21 C -0.094 4.094 22 C -0.114 4.114 23 H 0.069 0.931 24 H 0.063 0.937 25 H 0.051 0.949 26 H 0.055 0.945 27 H 0.020 0.980 28 H 0.006 0.994 29 H -0.045 1.045 30 H 0.264 0.736 31 H 0.015 0.985 32 H 0.091 0.909 33 H 0.064 0.936 34 H 0.033 0.967 35 H 0.077 0.923 36 H 0.097 0.903 37 H 0.134 0.866 38 H 0.140 0.860 39 H 0.148 0.852 40 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.004 14.350 12.301 22.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.076 4.076 3 N -0.270 5.270 4 C 0.084 3.916 5 C -0.562 4.562 6 H 0.080 0.920 7 C -0.196 4.196 8 N -0.575 5.575 9 Si 0.791 3.209 10 H -0.194 1.194 11 H -0.209 1.209 12 H -0.192 1.192 13 C -0.072 4.072 14 C -0.133 4.133 15 C -0.110 4.110 16 C -0.067 4.067 17 C -0.143 4.143 18 C -0.118 4.118 19 C -0.189 4.189 20 Br 0.031 6.969 21 C -0.114 4.114 22 C -0.132 4.132 23 H 0.088 0.912 24 H 0.082 0.918 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.039 0.961 28 H 0.024 0.976 29 H -0.027 1.027 30 H 0.072 0.928 31 H 0.033 0.967 32 H 0.109 0.891 33 H 0.082 0.918 34 H 0.052 0.948 35 H 0.095 0.905 36 H 0.115 0.885 37 H 0.152 0.848 38 H 0.158 0.842 39 H 0.165 0.835 40 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -12.089 15.341 11.890 22.866 hybrid contribution 1.367 -1.013 -0.370 1.741 sum -10.722 14.328 11.520 21.283 Atomic orbital electron populations 1.21683 0.93152 1.01836 1.02075 1.22025 0.96938 0.89068 0.99596 1.62096 1.21983 1.18184 1.24734 1.19354 0.83872 0.94187 0.94223 1.21468 0.93374 1.44657 0.96663 0.92040 1.25897 0.95207 0.95442 1.03088 1.70081 0.99021 1.49744 1.38664 0.85487 0.77068 0.79137 0.79254 1.19416 1.20864 1.19166 1.22160 1.00532 0.94990 0.89508 1.21383 1.00941 0.94084 0.96919 1.20591 1.04172 0.89432 0.96757 1.20227 0.93485 0.96436 0.96562 1.21304 0.98536 0.93853 1.00572 1.21265 0.97614 0.94396 0.98480 1.21922 0.97313 0.90585 1.09092 1.96682 1.99213 1.03769 1.97219 1.21340 0.96958 0.94742 0.98341 1.21347 0.99133 0.93442 0.99305 0.91209 0.91836 0.92945 0.92604 0.96136 0.97559 1.02712 0.92769 0.96717 0.89104 0.91771 0.94810 0.90452 0.88478 0.84777 0.84236 0.83454 0.83085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.70 9.96 71.98 0.72 -2.98 16 2 C 0.05 1.97 5.51 86.30 0.48 2.45 16 3 N -0.55 -23.27 4.36 -900.77 -3.92 -27.19 16 4 C 0.21 11.29 4.55 85.56 0.39 11.67 16 5 C -0.52 -29.98 8.23 25.60 0.21 -29.77 16 6 H 0.06 3.46 7.31 -2.91 -0.02 3.43 16 7 C 0.00 0.09 5.46 84.65 0.46 0.55 16 8 N -0.93 -56.84 13.29 21.45 0.28 -56.56 16 9 Si 0.97 44.68 29.54 68.60 2.03 46.70 16 10 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 11 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 12 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 13 C 0.06 1.89 4.81 86.30 0.41 2.31 16 14 C -0.10 -2.96 5.23 30.59 0.16 -2.80 16 15 C -0.07 -1.61 5.34 29.85 0.16 -1.45 16 16 C -0.07 -1.52 5.13 -19.86 -0.10 -1.63 16 17 C -0.12 -2.92 9.70 22.27 0.22 -2.70 16 18 C -0.10 -2.20 9.79 22.29 0.22 -1.98 16 19 C -0.11 -2.41 6.22 22.31 0.14 -2.27 16 20 Br -0.05 -1.06 33.70 -20.37 -0.69 -1.75 16 21 C -0.09 -1.90 9.79 22.29 0.22 -1.68 16 22 C -0.11 -2.31 9.70 22.27 0.22 -2.09 16 23 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 24 H 0.06 1.55 6.90 -2.39 -0.02 1.53 16 25 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 26 H 0.06 2.42 6.58 -2.39 -0.02 2.41 16 27 H 0.02 0.75 8.00 -2.38 -0.02 0.73 16 28 H 0.01 0.37 6.71 -2.39 -0.02 0.35 16 29 H -0.04 -2.64 8.12 -2.39 -0.02 -2.66 16 30 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 31 H 0.01 0.52 8.00 -2.39 -0.02 0.50 16 32 H 0.09 2.49 6.56 -2.39 -0.02 2.47 16 33 H 0.06 2.05 8.14 -2.38 -0.02 2.03 16 34 H 0.03 1.27 6.95 -2.39 -0.02 1.25 16 35 H 0.08 1.66 8.09 -2.39 -0.02 1.64 16 36 H 0.10 1.72 8.09 -2.38 -0.02 1.70 16 37 H 0.13 2.98 8.06 -2.91 -0.02 2.96 16 38 H 0.14 2.74 8.06 -2.91 -0.02 2.72 16 39 H 0.15 2.36 8.06 -2.91 -0.02 2.34 16 40 H 0.15 2.38 8.06 -2.91 -0.02 2.36 16 Total: -1.00 -65.00 347.90 2.59 -62.40 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: 1.00 Total: 8.77 kcal Atomic # 6 Polarization: -36.27 SS G_CDS: 3.89 Total: -32.38 kcal Atomic # 7 Polarization: -80.11 SS G_CDS: -3.64 Total: -83.75 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.70 kcal Atomic # 35 Polarization: -1.06 SS G_CDS: -0.69 Total: -1.75 kcal Total: -65.00 2.59 -62.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207322212.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.653 kcal (2) G-P(sol) polarization free energy of solvation -64.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds