Wall clock time and date at job start Tue Mar 31 2020 14:23:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47102 * 2 1 4 4 N 1.46897 * 109.47438 * 181.88384 * 3 2 1 5 5 C 1.46899 * 110.99883 * 61.89481 * 4 3 2 6 6 C 1.50695 * 109.47279 * 66.04888 * 5 4 3 7 7 H 1.07997 * 120.00333 * 0.02562 * 6 5 4 8 8 C 1.37877 * 120.00136 * 179.97438 * 6 5 4 9 9 N 1.31513 * 119.99960 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 120.00057 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47194 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47244 * 120.00362 * 10 8 6 13 13 H 1.48513 * 109.47213 * 240.00158 * 10 8 6 14 14 C 1.46905 * 110.99792 * 297.94511 * 4 3 2 15 15 C 1.53001 * 109.46852 * 288.32701 * 14 4 3 16 16 C 1.50697 * 109.46986 * 180.15168 * 15 14 4 17 17 C 1.38268 * 119.98909 * 269.72342 * 16 15 14 18 18 C 1.38225 * 120.01505 * 179.72534 * 17 16 15 19 19 C 1.38238 * 120.01310 * 0.55182 * 18 17 16 20 20 C 1.38309 * 119.98659 * 359.72534 * 19 18 17 21 21 Br 1.89096 * 120.00721 * 180.02562 * 20 19 18 22 22 C 1.38193 * 119.99827 * 89.99869 * 16 15 14 23 23 H 1.08997 * 109.47145 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47184 * 300.00160 * 1 2 3 25 25 H 1.09007 * 109.46771 * 60.00119 * 1 2 3 26 26 H 1.09001 * 109.47126 * 240.00392 * 2 1 3 27 27 H 1.08995 * 109.47047 * 120.00163 * 2 1 3 28 28 H 1.08997 * 109.47400 * 61.88229 * 3 2 1 29 29 H 1.09003 * 109.47310 * 301.88090 * 3 2 1 30 30 H 1.09006 * 109.47366 * 186.05335 * 5 4 3 31 31 H 1.09001 * 109.47183 * 306.04362 * 5 4 3 32 32 H 0.97007 * 120.00165 * 179.97438 * 9 8 6 33 33 H 1.09004 * 109.47135 * 48.32471 * 14 4 3 34 34 H 1.08997 * 109.47185 * 168.32498 * 14 4 3 35 35 H 1.09003 * 109.46722 * 300.14528 * 15 14 4 36 36 H 1.08994 * 109.47335 * 60.14516 * 15 14 4 37 37 H 1.07994 * 119.99592 * 0.02562 * 17 16 15 38 38 H 1.08006 * 119.99230 * 180.27432 * 18 17 16 39 39 H 1.07999 * 120.00952 * 179.74640 * 19 18 17 40 40 H 1.07993 * 120.00562 * 359.97438 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5083 1.4428 -0.0455 5 6 3.9969 0.8102 -1.2780 6 6 3.6013 1.6503 -2.4648 7 1 3.0431 2.5631 -2.3183 8 6 3.9528 1.2541 -3.7378 9 7 4.6329 0.1427 -3.9163 10 14 3.4630 2.2958 -5.2089 11 1 2.7086 3.4869 -4.7428 12 1 4.6830 2.7342 -5.9332 13 1 2.6075 1.4941 -6.1204 14 6 4.0719 0.7870 1.1420 15 6 3.8688 1.6841 2.3647 16 6 4.4502 1.0130 3.5823 17 6 3.6616 0.1818 4.3562 18 6 4.1959 -0.4385 5.4699 19 6 5.5160 -0.2191 5.8169 20 6 6.3036 0.6168 5.0462 21 35 8.1095 0.9167 5.5200 22 6 5.7699 1.2329 3.9283 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8901 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 1.7045 1.9465 0.9063 29 1 1.6494 1.9660 -0.8726 30 1 5.0830 0.7267 -1.2377 31 1 3.5596 -0.1836 -1.3743 32 1 4.8800 -0.1363 -4.8119 33 1 3.5691 -0.1666 1.3035 34 1 5.1375 0.6148 0.9907 35 1 4.3693 2.6386 2.2021 36 1 2.8031 1.8541 2.5176 37 1 2.6292 0.0133 4.0877 38 1 3.5808 -1.0912 6.0716 39 1 5.9323 -0.7006 6.6894 40 1 6.3847 1.8853 3.3261 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207505829.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:12 Heat of formation + Delta-G solvation = 13.680777 kcal Electronic energy + Delta-G solvation = -19380.446988 eV Core-core repulsion = 16433.656792 eV Total energy + Delta-G solvation = -2946.790196 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 325.074 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.54868 -37.57423 -33.71151 -32.80379 -32.25021 -31.56202 -29.50329 -28.52977 -26.61546 -25.13140 -22.91460 -22.51568 -22.12810 -20.83750 -19.02173 -16.87901 -16.21404 -15.77436 -15.42133 -14.95052 -14.70328 -14.37474 -13.75580 -13.61224 -13.58089 -13.22240 -12.75269 -12.60269 -12.52093 -11.91552 -11.53371 -11.31289 -11.25626 -11.09080 -11.00581 -10.85544 -10.84155 -10.62831 -10.55284 -10.46463 -10.36567 -9.91604 -9.65294 -9.21563 -8.92956 -8.69680 -8.42370 -7.15759 -6.01727 -4.02443 1.00240 1.18866 1.50751 3.31058 3.38786 3.43245 3.51009 4.42317 4.61045 4.71007 4.92355 5.08723 5.20171 5.28312 5.34205 5.38054 5.50785 5.52969 5.62354 5.69490 5.79850 5.88974 5.97676 6.07403 6.07852 6.16264 6.22749 6.30538 6.39351 6.47526 6.50344 6.58838 6.73288 6.75062 6.93899 7.33201 7.42846 7.81744 8.11006 8.21899 8.56642 9.05400 9.61601 11.09101 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.016330 B = 0.002938 C = 0.002579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.200753 B = 9529.575055 C =10852.590531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.164 4.164 3 C 0.065 3.935 4 N -0.535 5.535 5 C 0.189 3.811 6 C -0.503 4.503 7 H 0.063 0.937 8 C 0.055 3.945 9 N -0.899 5.899 10 Si 0.895 3.105 11 H -0.272 1.272 12 H -0.284 1.284 13 H -0.286 1.286 14 C 0.057 3.943 15 C -0.078 4.078 16 C -0.062 4.062 17 C -0.103 4.103 18 C -0.114 4.114 19 C -0.103 4.103 20 C -0.087 4.087 21 Br -0.059 7.059 22 C -0.087 4.087 23 H 0.044 0.956 24 H 0.045 0.955 25 H 0.054 0.946 26 H 0.075 0.925 27 H 0.051 0.949 28 H 0.051 0.949 29 H 0.080 0.920 30 H 0.027 0.973 31 H -0.001 1.001 32 H 0.260 0.740 33 H 0.031 0.969 34 H 0.066 0.934 35 H 0.081 0.919 36 H 0.073 0.927 37 H 0.127 0.873 38 H 0.129 0.871 39 H 0.128 0.872 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.880 -0.753 21.579 21.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.203 4.203 3 C -0.063 4.063 4 N -0.258 5.258 5 C 0.064 3.936 6 C -0.542 4.542 7 H 0.081 0.919 8 C -0.146 4.146 9 N -0.539 5.539 10 Si 0.723 3.277 11 H -0.197 1.197 12 H -0.211 1.211 13 H -0.212 1.212 14 C -0.071 4.071 15 C -0.116 4.116 16 C -0.063 4.063 17 C -0.121 4.121 18 C -0.133 4.133 19 C -0.123 4.123 20 C -0.166 4.166 21 Br 0.027 6.973 22 C -0.107 4.107 23 H 0.063 0.937 24 H 0.064 0.936 25 H 0.073 0.927 26 H 0.094 0.906 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.099 0.901 30 H 0.045 0.955 31 H 0.016 0.984 32 H 0.070 0.930 33 H 0.049 0.951 34 H 0.084 0.916 35 H 0.099 0.901 36 H 0.091 0.909 37 H 0.145 0.855 38 H 0.147 0.853 39 H 0.146 0.854 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 1.824 -0.244 21.596 21.675 hybrid contribution -0.790 -0.571 -0.984 1.384 sum 1.034 -0.814 20.613 20.655 Atomic orbital electron populations 1.21653 0.96496 1.00662 1.01222 1.22175 0.95527 1.00514 1.02116 1.22069 0.88712 0.94390 1.01158 1.62314 1.06220 1.54690 1.02583 1.19788 0.95472 0.93233 0.85073 1.21184 1.34773 1.08006 0.90224 0.91893 1.24974 0.95385 0.95241 0.99013 1.69968 1.39237 1.22626 1.22043 0.86487 0.78231 0.80381 0.82598 1.19670 1.21056 1.21187 1.22035 1.00043 0.94695 0.90377 1.20684 1.00970 0.99217 0.90726 1.20080 0.93108 0.96626 0.96530 1.21250 1.00240 0.96091 0.94553 1.21131 0.94764 0.99900 0.97462 1.21039 0.94018 0.97785 0.99454 1.21770 0.91412 1.03604 0.99852 1.96701 1.11948 1.95993 1.92691 1.21102 0.95331 0.99161 0.95122 0.93665 0.93555 0.92685 0.90617 0.93075 0.93032 0.90149 0.95506 0.98367 0.93045 0.95105 0.91575 0.90051 0.90872 0.85462 0.85341 0.85385 0.84804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 9.91 37.16 0.37 -1.66 16 2 C -0.16 -2.82 5.30 -26.73 -0.14 -2.96 16 3 C 0.07 1.20 5.01 -3.83 -0.02 1.18 16 4 N -0.54 -11.02 4.66 -236.07 -1.10 -12.12 16 5 C 0.19 4.80 4.50 -4.98 -0.02 4.78 16 6 C -0.50 -13.86 8.49 -34.44 -0.29 -14.15 16 7 H 0.06 1.73 7.11 -52.49 -0.37 1.35 16 8 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 9 N -0.90 -26.52 13.29 55.43 0.74 -25.78 16 10 Si 0.89 21.51 29.54 -169.99 -5.02 16.48 16 11 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 12 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 13 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 14 C 0.06 0.98 4.81 -3.82 -0.02 0.96 16 15 C -0.08 -1.08 5.38 -27.88 -0.15 -1.23 16 16 C -0.06 -0.78 5.13 -104.63 -0.54 -1.31 16 17 C -0.10 -1.14 9.70 -39.58 -0.38 -1.52 16 18 C -0.11 -1.12 10.05 -39.59 -0.40 -1.52 16 19 C -0.10 -1.07 9.79 -39.56 -0.39 -1.46 16 20 C -0.09 -1.02 6.22 -39.51 -0.25 -1.27 16 21 Br -0.06 -0.64 33.70 -68.01 -2.29 -2.93 16 22 C -0.09 -1.10 9.44 -39.56 -0.37 -1.47 16 23 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 25 H 0.05 0.80 8.14 -51.92 -0.42 0.38 16 26 H 0.08 1.55 6.22 -51.93 -0.32 1.23 16 27 H 0.05 0.82 6.31 -51.93 -0.33 0.49 16 28 H 0.05 0.82 6.62 -51.93 -0.34 0.48 16 29 H 0.08 1.64 6.81 -51.93 -0.35 1.28 16 30 H 0.03 0.74 7.87 -51.93 -0.41 0.33 16 31 H 0.00 -0.04 6.02 -51.93 -0.31 -0.35 16 32 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 33 H 0.03 0.53 5.88 -51.93 -0.31 0.22 16 34 H 0.07 1.21 7.82 -51.93 -0.41 0.80 16 35 H 0.08 1.16 8.09 -51.93 -0.42 0.74 16 36 H 0.07 0.96 6.66 -51.93 -0.35 0.61 16 37 H 0.13 1.24 8.06 -52.49 -0.42 0.81 16 38 H 0.13 0.94 8.06 -52.48 -0.42 0.51 16 39 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 40 H 0.13 1.64 8.06 -52.49 -0.42 1.22 16 LS Contribution 342.08 15.07 5.16 5.16 Total: -1.00 -28.94 342.08 -11.23 -40.18 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: -6.01 Total: -0.79 kcal Atomic # 6 Polarization: -17.49 SS G_CDS: -2.70 Total: -20.19 kcal Atomic # 7 Polarization: -37.54 SS G_CDS: -0.36 Total: -37.90 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 35 Polarization: -0.64 SS G_CDS: -2.29 Total: -2.93 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -28.94 -11.23 -40.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207505829.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.858 kcal (2) G-P(sol) polarization free energy of solvation -28.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.177 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds