Wall clock time and date at job start Tue Mar 31 2020 14:47:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46905 * 109.46959 * 2 1 4 4 C 1.46895 * 110.99724 * 199.75235 * 3 2 1 5 5 C 1.50693 * 109.47252 * 66.04966 * 4 3 2 6 6 H 1.08001 * 119.99888 * 359.97438 * 5 4 3 7 7 C 1.37883 * 120.00085 * 180.02562 * 5 4 3 8 8 N 1.31517 * 120.00019 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 119.99808 * 359.97438 * 7 5 4 10 10 H 1.48494 * 109.47239 * 90.00502 * 9 7 5 11 11 H 1.48506 * 109.46707 * 210.00126 * 9 7 5 12 12 H 1.48494 * 109.47121 * 329.99538 * 9 7 5 13 13 C 1.46899 * 110.99994 * 75.80096 * 3 2 1 14 14 C 1.53000 * 109.46949 * 199.64641 * 13 3 2 15 15 C 1.53002 * 109.47004 * 174.87229 * 14 13 3 16 16 C 1.50698 * 109.47285 * 179.97438 * 15 14 13 17 17 C 1.38266 * 119.99719 * 270.28027 * 16 15 14 18 18 C 1.38221 * 120.02114 * 180.23246 * 17 16 15 19 19 C 1.38245 * 120.00646 * 359.48560 * 18 17 16 20 20 C 1.38297 * 119.99406 * 0.25923 * 19 18 17 21 21 Br 1.89100 * 120.01226 * 179.97438 * 20 19 18 22 22 C 1.38196 * 119.99450 * 89.99756 * 16 15 14 23 23 H 1.08997 * 109.46891 * 174.85209 * 1 2 3 24 24 H 1.08999 * 109.46923 * 294.85317 * 1 2 3 25 25 H 1.08999 * 109.46717 * 54.85143 * 1 2 3 26 26 H 1.08995 * 109.47268 * 239.99905 * 2 1 3 27 27 H 1.08994 * 109.46831 * 119.99554 * 2 1 3 28 28 H 1.09001 * 109.46877 * 186.04490 * 4 3 2 29 29 H 1.09002 * 109.47247 * 306.04716 * 4 3 2 30 30 H 0.96998 * 119.99771 * 179.97438 * 8 7 5 31 31 H 1.08993 * 109.47497 * 79.64279 * 13 3 2 32 32 H 1.09002 * 109.47061 * 319.64252 * 13 3 2 33 33 H 1.09003 * 109.47016 * 54.87640 * 14 13 3 34 34 H 1.08992 * 109.47332 * 294.86990 * 14 13 3 35 35 H 1.09001 * 109.47102 * 59.99840 * 15 14 13 36 36 H 1.09002 * 109.47384 * 300.00191 * 15 14 13 37 37 H 1.08001 * 119.98476 * 359.97354 * 17 16 15 38 38 H 1.07991 * 119.99389 * 179.76885 * 18 17 16 39 39 H 1.08003 * 120.00184 * 180.23641 * 19 18 17 40 40 H 1.08004 * 120.00830 * 0.04754 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4121 1.4511 -0.4635 5 6 3.4784 1.0475 -1.9138 6 1 2.5765 0.7692 -2.4387 7 6 4.6907 1.0323 -2.5705 8 7 4.7487 0.6796 -3.8361 9 14 6.2508 1.5129 -1.6624 10 1 6.8537 0.3063 -1.0414 11 1 7.2158 2.1118 -2.6192 12 1 5.9231 2.5027 -0.6051 13 6 1.8780 1.9935 1.3295 14 6 1.9208 3.5174 1.2001 15 6 1.6458 4.1530 2.5644 16 6 1.6887 5.6540 2.4372 17 6 2.8821 6.3291 2.6154 18 6 2.9209 7.7062 2.5036 19 6 1.7686 8.4083 2.2029 20 6 0.5757 7.7330 2.0193 21 35 -1.0010 8.6928 1.6087 22 6 0.5363 6.3550 2.1365 23 1 -0.3633 -1.0235 -0.0922 24 1 -0.3633 0.4319 0.9325 25 1 -0.3633 0.5916 -0.8403 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5137 0.8900 28 1 3.7840 2.4697 -0.3525 29 1 4.0253 0.7736 0.1307 30 1 5.6015 0.6693 -4.2981 31 1 2.6941 1.6602 1.9705 32 1 0.9261 1.6927 1.7672 33 1 1.1624 3.8431 0.4881 34 1 2.9055 3.8246 0.8481 35 1 2.4042 3.8273 3.2765 36 1 0.6611 3.8458 2.9166 37 1 3.7833 5.7805 2.8463 38 1 3.8525 8.2334 2.6466 39 1 1.7998 9.4840 2.1117 40 1 -0.3952 5.8273 1.9935 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001208826151.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:22 Heat of formation + Delta-G solvation = -2.519068 kcal Electronic energy + Delta-G solvation = -19153.539779 eV Core-core repulsion = 16206.047105 eV Total energy + Delta-G solvation = -2947.492674 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 325.074 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.40642 -38.88443 -35.54411 -34.63708 -33.14234 -32.11352 -31.34179 -30.19343 -28.83841 -26.26821 -23.98810 -23.47266 -23.16140 -21.63077 -21.19070 -19.00447 -17.72876 -16.97718 -16.52167 -16.29824 -15.88748 -15.75729 -15.36654 -14.94532 -14.51506 -14.42089 -14.36998 -14.27660 -13.97235 -13.32640 -13.03076 -12.83778 -12.77800 -12.52775 -12.48460 -12.16951 -12.12149 -11.82976 -11.81759 -11.73648 -11.66535 -11.30507 -11.26145 -11.20600 -10.77513 -9.82510 -9.60256 -8.97257 -8.27815 -6.30375 0.13790 0.32487 0.64049 1.33049 1.35157 1.45939 2.34273 2.63323 3.05113 3.25819 3.72848 3.88881 4.07790 4.12210 4.24597 4.30172 4.40257 4.41487 4.49132 4.55737 4.61336 4.71901 4.76878 4.81478 4.87779 4.92184 5.03727 5.04641 5.08799 5.19656 5.24717 5.30781 5.38415 5.44232 5.45817 5.59959 5.62114 5.88325 6.04848 6.45424 6.72047 6.76952 7.33098 8.89057 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.014613 B = 0.002945 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1915.625109 B = 9504.562838 C =10176.609847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.053 3.947 3 N -0.546 5.546 4 C 0.173 3.827 5 C -0.515 4.515 6 H 0.036 0.964 7 C 0.007 3.993 8 N -0.949 5.949 9 Si 0.945 3.055 10 H -0.267 1.267 11 H -0.282 1.282 12 H -0.248 1.248 13 C 0.054 3.946 14 C -0.100 4.100 15 C -0.070 4.070 16 C -0.078 4.078 17 C -0.112 4.112 18 C -0.113 4.113 19 C -0.106 4.106 20 C -0.101 4.101 21 Br -0.056 7.056 22 C -0.100 4.100 23 H 0.067 0.933 24 H 0.066 0.934 25 H 0.044 0.956 26 H 0.049 0.951 27 H 0.032 0.968 28 H 0.030 0.970 29 H -0.018 1.018 30 H 0.266 0.734 31 H 0.030 0.970 32 H 0.088 0.912 33 H 0.056 0.944 34 H 0.044 0.956 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.140 0.860 38 H 0.154 0.846 39 H 0.145 0.855 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.896 16.173 19.139 26.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.075 4.075 3 N -0.271 5.271 4 C 0.046 3.954 5 C -0.553 4.553 6 H 0.054 0.946 7 C -0.190 4.190 8 N -0.590 5.590 9 Si 0.768 3.232 10 H -0.193 1.193 11 H -0.207 1.207 12 H -0.171 1.171 13 C -0.074 4.074 14 C -0.138 4.138 15 C -0.108 4.108 16 C -0.079 4.079 17 C -0.130 4.130 18 C -0.131 4.131 19 C -0.125 4.125 20 C -0.181 4.181 21 Br 0.030 6.970 22 C -0.119 4.119 23 H 0.086 0.914 24 H 0.085 0.915 25 H 0.063 0.937 26 H 0.068 0.932 27 H 0.050 0.950 28 H 0.048 0.952 29 H 0.000 1.000 30 H 0.075 0.925 31 H 0.048 0.952 32 H 0.106 0.894 33 H 0.075 0.925 34 H 0.063 0.937 35 H 0.105 0.895 36 H 0.107 0.893 37 H 0.158 0.842 38 H 0.172 0.828 39 H 0.163 0.837 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -9.678 16.771 18.514 26.790 hybrid contribution 1.605 -0.682 0.082 1.746 sum -8.074 16.089 18.596 25.881 Atomic orbital electron populations 1.21683 0.93620 1.01695 1.01921 1.21997 0.96761 0.88982 0.99740 1.61891 1.21397 1.18459 1.25314 1.19928 0.86278 0.95532 0.93668 1.21303 0.93937 1.44298 0.95753 0.94557 1.25850 1.02683 0.94933 0.95544 1.70056 1.26945 1.50380 1.11643 0.85747 0.78788 0.79595 0.79040 1.19263 1.20727 1.17144 1.22206 1.01202 0.94822 0.89142 1.21443 1.01315 0.94162 0.96882 1.20561 1.04108 0.89182 0.96908 1.20064 0.93023 0.96434 0.98411 1.21519 0.98006 0.94989 0.98464 1.21468 0.98810 0.94158 0.98714 1.21349 0.91115 1.01126 0.98957 1.21934 0.93097 0.95014 1.08019 1.96697 1.32629 1.74272 1.93418 1.21161 0.99500 0.92145 0.99142 0.91371 0.91469 0.93658 0.93242 0.94955 0.95199 1.00040 0.92501 0.95170 0.89352 0.92470 0.93724 0.89535 0.89299 0.84208 0.82785 0.83711 0.84690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.93 9.96 71.98 0.72 -3.21 16 2 C 0.05 2.00 5.51 86.30 0.48 2.48 16 3 N -0.55 -22.21 4.36 -900.82 -3.92 -26.13 16 4 C 0.17 8.31 3.62 85.56 0.31 8.62 16 5 C -0.51 -30.09 8.79 25.60 0.22 -29.86 16 6 H 0.04 2.38 7.56 -2.91 -0.02 2.36 16 7 C 0.01 0.41 5.47 84.66 0.46 0.87 16 8 N -0.95 -59.97 13.96 21.45 0.30 -59.67 16 9 Si 0.94 44.17 27.47 68.60 1.88 46.06 16 10 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 11 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 12 H -0.25 -10.71 6.54 99.48 0.65 -10.06 16 13 C 0.05 1.64 4.81 86.30 0.41 2.06 16 14 C -0.10 -2.83 5.23 30.60 0.16 -2.67 16 15 C -0.07 -1.42 5.34 29.85 0.16 -1.26 16 16 C -0.08 -1.67 5.13 -19.87 -0.10 -1.77 16 17 C -0.11 -2.18 9.70 22.27 0.22 -1.97 16 18 C -0.11 -1.97 10.05 22.27 0.22 -1.74 16 19 C -0.11 -1.97 9.79 22.29 0.22 -1.75 16 20 C -0.10 -2.14 6.22 22.31 0.14 -2.00 16 21 Br -0.06 -1.09 33.70 -20.37 -0.69 -1.78 16 22 C -0.10 -2.17 9.44 22.29 0.21 -1.96 16 23 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 24 H 0.07 1.67 6.90 -2.39 -0.02 1.65 16 25 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 26 H 0.05 2.24 6.58 -2.39 -0.02 2.22 16 27 H 0.03 1.10 8.00 -2.39 -0.02 1.09 16 28 H 0.03 1.43 5.77 -2.39 -0.01 1.42 16 29 H -0.02 -0.86 7.55 -2.39 -0.02 -0.87 16 30 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 31 H 0.03 0.89 8.00 -2.39 -0.02 0.87 16 32 H 0.09 2.25 6.56 -2.39 -0.02 2.24 16 33 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.04 1.44 6.95 -2.39 -0.02 1.42 16 35 H 0.09 1.53 8.09 -2.39 -0.02 1.51 16 36 H 0.09 1.53 8.09 -2.39 -0.02 1.52 16 37 H 0.14 2.34 8.06 -2.91 -0.02 2.32 16 38 H 0.15 1.85 8.06 -2.92 -0.02 1.82 16 39 H 0.15 2.14 8.06 -2.91 -0.02 2.12 16 40 H 0.14 2.73 8.06 -2.91 -0.02 2.71 16 Total: -1.00 -67.35 344.29 2.35 -65.00 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: 0.95 Total: 10.69 kcal Atomic # 6 Polarization: -38.00 SS G_CDS: 3.83 Total: -34.17 kcal Atomic # 7 Polarization: -82.18 SS G_CDS: -3.63 Total: -85.80 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 1.88 Total: 46.06 kcal Atomic # 35 Polarization: -1.09 SS G_CDS: -0.69 Total: -1.78 kcal Total: -67.35 2.35 -65.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208826151.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.479 kcal (2) G-P(sol) polarization free energy of solvation -67.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds