Wall clock time and date at job start Tue Mar 31 2020 13:52:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31578 * 1 3 3 Si 1.86799 * 120.00155 * 2 1 4 4 H 1.48500 * 109.47331 * 269.72583 * 3 2 1 5 5 H 1.48495 * 109.47036 * 29.73043 * 3 2 1 6 6 H 1.48503 * 109.46946 * 149.72792 * 3 2 1 7 7 C 1.38631 * 120.00017 * 179.73092 * 2 1 3 8 8 H 1.08005 * 119.99584 * 0.26980 * 7 2 1 9 9 O 1.34799 * 120.00259 * 180.27437 * 7 2 1 10 10 C 1.35782 * 117.00067 * 174.74077 * 9 7 2 11 11 C 1.38730 * 120.10373 * 5.96661 * 10 9 7 12 12 C 1.38173 * 120.00604 * 179.72420 * 11 10 9 13 13 C 1.38350 * 120.20993 * 0.55807 * 12 11 10 14 14 C 1.38186 * 120.20646 * 359.71619 * 13 12 11 15 15 C 1.38760 * 119.99264 * 0.02562 * 14 13 12 16 16 N 1.39832 * 120.10571 * 179.97438 * 15 14 13 17 17 C 1.39035 * 120.00534 * 40.46960 * 16 15 14 18 18 C 1.39338 * 120.10147 * 174.72889 * 17 16 15 19 19 N 1.31921 * 119.88846 * 179.68417 * 18 17 16 20 20 C 1.32280 * 120.08917 * 0.61144 * 19 18 17 21 21 C 1.38176 * 120.19510 * 359.65951 * 20 19 18 22 22 C 1.50698 * 119.94825 * 180.02562 * 21 20 19 23 23 F 1.39903 * 109.46968 * 270.02650 * 22 21 20 24 24 F 1.39898 * 109.46800 * 30.02229 * 22 21 20 25 25 F 1.39890 * 109.47010 * 150.02377 * 22 21 20 26 26 N 1.32235 * 120.10405 * 0.02699 * 21 20 19 27 27 H 0.96999 * 119.99593 * 0.02562 * 1 2 3 28 28 H 1.08004 * 119.99451 * 0.02562 * 11 10 9 29 29 H 1.08000 * 119.89603 * 180.29956 * 12 11 10 30 30 H 1.08002 * 119.90006 * 179.74597 * 13 12 11 31 31 H 1.08006 * 120.00372 * 179.97438 * 14 13 12 32 32 H 0.97009 * 119.99918 * 220.46786 * 16 15 14 33 33 H 1.08005 * 120.05567 * 359.97438 * 18 17 16 34 34 H 1.08004 * 119.90254 * 179.68607 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 2.5032 2.0431 -1.4000 5 1 1.4445 2.6542 0.6943 6 1 3.5445 1.4417 0.7058 7 6 2.0089 -1.2006 0.0056 8 1 1.4689 -2.1359 0.0056 9 8 3.3569 -1.2006 0.0112 10 6 3.9729 -2.4051 0.1275 11 6 3.2252 -3.5736 0.1093 12 6 3.8546 -4.7984 0.2220 13 6 5.2292 -4.8642 0.3647 14 6 5.9819 -3.7056 0.3896 15 6 5.3591 -2.4712 0.2717 16 7 6.1184 -1.2973 0.2971 17 6 7.3385 -1.2439 -0.3674 18 6 8.0447 -0.0447 -0.4364 19 7 9.2050 -0.0002 -1.0626 20 6 9.6920 -1.0890 -1.6347 21 6 8.9920 -2.2787 -1.5732 22 6 9.5523 -3.5158 -2.2263 23 9 9.1025 -3.5893 -3.5491 24 9 10.9501 -3.4585 -2.2116 25 9 9.1246 -4.6480 -1.5247 26 7 7.8312 -2.3335 -0.9422 27 1 -0.4849 0.8401 -0.0004 28 1 2.1516 -3.5260 0.0022 29 1 3.2714 -5.7072 0.2028 30 1 5.7156 -5.8242 0.4565 31 1 7.0547 -3.7608 0.5016 32 1 5.7938 -0.5200 0.7784 33 1 7.6451 0.8458 0.0260 34 1 10.6398 -1.0479 -2.1509 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212597115.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:32 Heat of formation + Delta-G solvation = -81.243596 kcal Electronic energy + Delta-G solvation = -27048.844759 eV Core-core repulsion = 22533.568691 eV Total energy + Delta-G solvation = -4515.276068 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.078 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -50.31766 -47.87255 -47.73568 -41.40818 -39.49779 -37.08404 -35.73365 -34.40297 -32.52496 -31.42324 -29.52291 -28.59665 -27.01693 -25.40325 -24.32688 -23.37135 -21.67805 -21.34818 -19.08086 -18.86766 -18.68990 -18.10807 -17.82895 -17.11835 -16.94166 -16.73968 -15.76444 -15.37949 -14.80154 -14.61680 -14.55633 -14.36959 -14.20983 -13.99061 -13.93593 -13.90203 -13.82122 -13.44168 -13.35438 -12.74963 -12.62163 -12.37924 -12.15665 -11.71212 -11.48302 -11.18227 -11.15142 -10.92384 -10.65683 -10.40401 -9.64658 -9.35319 -9.03999 -8.89659 -7.85149 -7.19532 -6.53849 -4.20673 0.34777 0.94313 1.97987 2.14752 2.19007 2.93289 3.10629 3.13967 3.20532 3.33831 3.37798 3.76844 4.08555 4.11572 4.20552 4.21038 4.37490 4.58123 4.62391 4.88125 4.96576 5.04192 5.53262 5.63453 5.75278 5.90642 6.06206 6.26331 6.51201 6.61835 6.82923 6.94120 7.18818 7.19445 7.37528 7.46446 7.65803 7.80040 7.92339 8.80080 9.37714 10.53728 Molecular weight = 325.08amu Principal moments of inertia in cm(-1) A = 0.015527 B = 0.004163 C = 0.003510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1802.855379 B = 6724.322704 C = 7975.818291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.064 3.936 3 Si 0.907 3.093 4 H -0.274 1.274 5 H -0.281 1.281 6 H -0.263 1.263 7 C -0.389 4.389 8 H 0.108 0.892 9 O -0.217 6.217 10 C 0.146 3.854 11 C -0.209 4.209 12 C -0.080 4.080 13 C -0.188 4.188 14 C -0.064 4.064 15 C 0.060 3.940 16 N -0.623 5.623 17 C 0.365 3.635 18 C 0.029 3.971 19 N -0.395 5.395 20 C 0.018 3.982 21 C 0.039 3.961 22 C 0.529 3.471 23 F -0.168 7.168 24 F -0.170 7.170 25 F -0.161 7.161 26 N -0.454 5.454 27 H 0.281 0.719 28 H 0.138 0.862 29 H 0.113 0.887 30 H 0.113 0.887 31 H 0.125 0.875 32 H 0.425 0.575 33 H 0.177 0.823 34 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.465 -3.772 -1.028 17.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.139 4.139 3 Si 0.733 3.267 4 H -0.199 1.199 5 H -0.207 1.207 6 H -0.187 1.187 7 C -0.465 4.465 8 H 0.125 0.875 9 O -0.122 6.122 10 C 0.092 3.908 11 C -0.228 4.228 12 C -0.098 4.098 13 C -0.208 4.208 14 C -0.085 4.085 15 C -0.035 4.035 16 N -0.247 5.247 17 C 0.125 3.875 18 C -0.143 4.143 19 N -0.107 5.107 20 C -0.142 4.142 21 C -0.104 4.104 22 C 0.473 3.527 23 F -0.149 7.149 24 F -0.152 7.152 25 F -0.142 7.142 26 N -0.177 5.177 27 H 0.091 0.909 28 H 0.155 0.845 29 H 0.131 0.869 30 H 0.131 0.869 31 H 0.143 0.857 32 H 0.264 0.736 33 H 0.194 0.806 34 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 17.268 -3.552 -1.073 17.662 hybrid contribution -0.113 0.700 -0.017 0.710 sum 17.155 -2.851 -1.089 17.425 Atomic orbital electron populations 1.69645 1.05538 1.28596 1.47540 1.24460 0.95031 0.98749 0.95702 0.86178 0.80029 0.81604 0.78911 1.19901 1.20694 1.18701 1.20741 0.76594 0.96733 1.52417 0.87495 1.83503 1.22896 1.25332 1.80441 1.18942 0.89989 0.86431 0.95402 1.21138 1.01103 0.91294 1.09301 1.20878 0.94350 0.96823 0.97796 1.20583 0.93772 0.97229 1.09198 1.20666 0.99392 0.90238 0.98164 1.16806 0.87233 0.85932 1.13506 1.41732 1.15856 1.15442 1.51674 1.19317 0.88316 0.89839 0.90076 1.23363 0.92512 0.97327 1.01080 1.68412 1.10004 1.28090 1.04189 1.23007 1.01822 0.87899 1.01441 1.21711 0.94258 0.94502 0.99957 1.17718 0.75393 0.82886 0.76737 1.93255 1.88954 1.96514 1.36196 1.93208 1.29114 1.96457 1.96374 1.93250 1.89495 1.53073 1.78422 1.67686 1.10787 1.28997 1.10225 0.90913 0.84465 0.86903 0.86932 0.85673 0.73590 0.80555 0.80810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.26 13.96 55.48 0.77 -23.49 16 2 C 0.06 1.71 5.49 -17.52 -0.10 1.61 16 3 Si 0.91 20.23 28.62 -169.99 -4.86 15.37 16 4 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 5 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 6 H -0.26 -5.55 7.11 56.52 0.40 -5.14 16 7 C -0.39 -10.30 9.94 30.88 0.31 -9.99 16 8 H 0.11 2.92 5.44 -52.48 -0.29 2.63 16 9 O -0.22 -5.20 8.24 0.04 0.00 -5.20 16 10 C 0.15 3.14 6.67 -38.92 -0.26 2.88 16 11 C -0.21 -4.25 9.16 -39.42 -0.36 -4.61 16 12 C -0.08 -1.38 10.04 -39.56 -0.40 -1.77 16 13 C -0.19 -3.11 10.04 -39.56 -0.40 -3.50 16 14 C -0.06 -1.11 8.60 -39.41 -0.34 -1.45 16 15 C 0.06 1.11 6.24 -83.53 -0.52 0.59 16 16 N -0.62 -10.05 5.26 -9.75 -0.05 -10.10 16 17 C 0.37 5.40 7.30 -154.67 -1.13 4.27 16 18 C 0.03 0.36 11.09 -17.10 -0.19 0.17 16 19 N -0.39 -4.97 10.49 -12.87 -0.14 -5.10 16 20 C 0.02 0.21 10.56 -17.38 -0.18 0.03 16 21 C 0.04 0.51 6.29 -82.44 -0.52 -0.01 16 22 C 0.53 6.40 3.44 36.00 0.12 6.52 16 23 F -0.17 -2.14 17.30 2.25 0.04 -2.10 16 24 F -0.17 -1.76 16.45 2.25 0.04 -1.72 16 25 F -0.16 -2.14 17.05 2.25 0.04 -2.10 16 26 N -0.45 -6.97 7.00 -8.46 -0.06 -7.03 16 27 H 0.28 7.19 8.31 -40.82 -0.34 6.85 16 28 H 0.14 2.92 5.64 -52.48 -0.30 2.63 16 29 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 30 H 0.11 1.58 8.06 -52.49 -0.42 1.15 16 31 H 0.13 2.06 6.50 -52.48 -0.34 1.72 16 32 H 0.42 6.25 8.71 -40.82 -0.36 5.90 16 33 H 0.18 1.70 8.06 -52.48 -0.42 1.27 16 34 H 0.17 1.49 7.59 -52.48 -0.40 1.09 16 LS Contribution 316.94 15.07 4.78 4.78 Total: -1.00 -28.58 316.94 -5.49 -34.07 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -2.08 Total: 7.89 kcal Atomic # 6 Polarization: -1.30 SS G_CDS: -3.96 Total: -5.26 kcal Atomic # 7 Polarization: -46.24 SS G_CDS: 0.53 Total: -45.71 kcal Atomic # 8 Polarization: -5.20 SS G_CDS: 0.00 Total: -5.20 kcal Atomic # 9 Polarization: -6.04 SS G_CDS: 0.11 Total: -5.92 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -4.86 Total: 15.37 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -28.58 -5.49 -34.07 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212597115.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.179 kcal (2) G-P(sol) polarization free energy of solvation -28.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds