Wall clock time and date at job start Tue Mar 31 2020 13:52:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31578 * 1 3 3 Si 1.86799 * 120.00155 * 2 1 4 4 H 1.48500 * 109.47331 * 269.72583 * 3 2 1 5 5 H 1.48495 * 109.47036 * 29.73043 * 3 2 1 6 6 H 1.48503 * 109.46946 * 149.72792 * 3 2 1 7 7 C 1.38631 * 120.00017 * 179.73092 * 2 1 3 8 8 H 1.08005 * 119.99584 * 0.26980 * 7 2 1 9 9 O 1.34799 * 120.00259 * 180.27437 * 7 2 1 10 10 C 1.35782 * 117.00067 * 174.74077 * 9 7 2 11 11 C 1.38730 * 120.10373 * 5.96661 * 10 9 7 12 12 C 1.38173 * 120.00604 * 179.72420 * 11 10 9 13 13 C 1.38350 * 120.20993 * 0.55807 * 12 11 10 14 14 C 1.38186 * 120.20646 * 359.71619 * 13 12 11 15 15 C 1.38760 * 119.99264 * 0.02562 * 14 13 12 16 16 N 1.39832 * 120.10571 * 179.97438 * 15 14 13 17 17 C 1.39035 * 120.00534 * 40.46960 * 16 15 14 18 18 C 1.39338 * 120.10147 * 174.72889 * 17 16 15 19 19 N 1.31921 * 119.88846 * 179.68417 * 18 17 16 20 20 C 1.32280 * 120.08917 * 0.61144 * 19 18 17 21 21 C 1.38176 * 120.19510 * 359.65951 * 20 19 18 22 22 C 1.50698 * 119.94825 * 180.02562 * 21 20 19 23 23 F 1.39903 * 109.46968 * 270.02650 * 22 21 20 24 24 F 1.39898 * 109.46800 * 30.02229 * 22 21 20 25 25 F 1.39890 * 109.47010 * 150.02377 * 22 21 20 26 26 N 1.32235 * 120.10405 * 0.02699 * 21 20 19 27 27 H 0.96999 * 119.99593 * 0.02562 * 1 2 3 28 28 H 1.08004 * 119.99451 * 0.02562 * 11 10 9 29 29 H 1.08000 * 119.89603 * 180.29956 * 12 11 10 30 30 H 1.08002 * 119.90006 * 179.74597 * 13 12 11 31 31 H 1.08006 * 120.00372 * 179.97438 * 14 13 12 32 32 H 0.97009 * 119.99918 * 220.46786 * 16 15 14 33 33 H 1.08005 * 120.05567 * 359.97438 * 18 17 16 34 34 H 1.08004 * 119.90254 * 179.68607 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 2.5032 2.0431 -1.4000 5 1 1.4445 2.6542 0.6943 6 1 3.5445 1.4417 0.7058 7 6 2.0089 -1.2006 0.0056 8 1 1.4689 -2.1359 0.0056 9 8 3.3569 -1.2006 0.0112 10 6 3.9729 -2.4051 0.1275 11 6 3.2252 -3.5736 0.1093 12 6 3.8546 -4.7984 0.2220 13 6 5.2292 -4.8642 0.3647 14 6 5.9819 -3.7056 0.3896 15 6 5.3591 -2.4712 0.2717 16 7 6.1184 -1.2973 0.2971 17 6 7.3385 -1.2439 -0.3674 18 6 8.0447 -0.0447 -0.4364 19 7 9.2050 -0.0002 -1.0626 20 6 9.6920 -1.0890 -1.6347 21 6 8.9920 -2.2787 -1.5732 22 6 9.5523 -3.5158 -2.2263 23 9 9.1025 -3.5893 -3.5491 24 9 10.9501 -3.4585 -2.2116 25 9 9.1246 -4.6480 -1.5247 26 7 7.8312 -2.3335 -0.9422 27 1 -0.4849 0.8401 -0.0004 28 1 2.1516 -3.5260 0.0022 29 1 3.2714 -5.7072 0.2028 30 1 5.7156 -5.8242 0.4565 31 1 7.0547 -3.7608 0.5016 32 1 5.7938 -0.5200 0.7784 33 1 7.6451 0.8458 0.0260 34 1 10.6398 -1.0479 -2.1509 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212597115.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:31 Heat of formation + Delta-G solvation = -97.771239 kcal Electronic energy + Delta-G solvation = -27049.561452 eV Core-core repulsion = 22533.568691 eV Total energy + Delta-G solvation = -4515.992761 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.078 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -51.26244 -48.78549 -48.72170 -42.47560 -41.01661 -38.60482 -37.02001 -35.44809 -34.44914 -32.58869 -31.00034 -29.95598 -28.05291 -27.22788 -25.44107 -24.44710 -23.13146 -22.78586 -20.18347 -20.05026 -19.70144 -19.63884 -19.20879 -18.34103 -17.97888 -17.87110 -17.11302 -16.70181 -16.21388 -15.89464 -15.67745 -15.55155 -15.50441 -15.39575 -15.15387 -14.91220 -14.86647 -14.85107 -14.34391 -14.31760 -14.10872 -13.73755 -13.48620 -12.94835 -12.89131 -12.59146 -12.50256 -12.46254 -12.05691 -11.92603 -11.43686 -10.92226 -10.42920 -10.17706 -9.33661 -8.59908 -8.49081 -6.21290 -0.64942 -0.13581 0.56436 0.65383 1.21030 1.32491 1.37239 1.49478 1.81415 2.26782 2.32442 2.39037 2.76268 2.77611 2.98994 3.10307 3.15440 3.24601 3.25843 3.54415 3.88980 4.11099 4.18308 4.25184 4.44756 4.60108 4.70385 4.93345 5.09193 5.25688 5.47012 5.58924 5.69743 5.74099 5.83955 5.94839 6.24776 6.32593 6.65756 6.84448 7.53646 8.62243 Molecular weight = 325.08amu Principal moments of inertia in cm(-1) A = 0.015527 B = 0.004163 C = 0.003510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1802.855379 B = 6724.322704 C = 7975.818291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.009 3.991 3 Si 0.969 3.031 4 H -0.274 1.274 5 H -0.274 1.274 6 H -0.244 1.244 7 C -0.396 4.396 8 H 0.080 0.920 9 O -0.233 6.233 10 C 0.108 3.892 11 C -0.224 4.224 12 C -0.083 4.083 13 C -0.167 4.167 14 C -0.070 4.070 15 C 0.076 3.924 16 N -0.633 5.633 17 C 0.348 3.652 18 C 0.043 3.957 19 N -0.403 5.403 20 C 0.037 3.963 21 C 0.024 3.976 22 C 0.535 3.465 23 F -0.173 7.173 24 F -0.157 7.157 25 F -0.169 7.169 26 N -0.476 5.476 27 H 0.284 0.716 28 H 0.115 0.885 29 H 0.142 0.858 30 H 0.148 0.852 31 H 0.139 0.861 32 H 0.429 0.571 33 H 0.205 0.795 34 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.985 -3.771 -1.081 21.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.189 4.189 3 Si 0.791 3.209 4 H -0.199 1.199 5 H -0.199 1.199 6 H -0.167 1.167 7 C -0.472 4.472 8 H 0.097 0.903 9 O -0.141 6.141 10 C 0.057 3.943 11 C -0.244 4.244 12 C -0.101 4.101 13 C -0.186 4.186 14 C -0.091 4.091 15 C -0.019 4.019 16 N -0.259 5.259 17 C 0.109 3.891 18 C -0.127 4.127 19 N -0.115 5.115 20 C -0.122 4.122 21 C -0.119 4.119 22 C 0.479 3.521 23 F -0.154 7.154 24 F -0.138 7.138 25 F -0.150 7.150 26 N -0.199 5.199 27 H 0.093 0.907 28 H 0.133 0.867 29 H 0.160 0.840 30 H 0.166 0.834 31 H 0.156 0.844 32 H 0.269 0.731 33 H 0.222 0.778 34 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 20.868 -3.580 -1.134 21.203 hybrid contribution -0.911 0.451 -0.042 1.017 sum 19.957 -3.129 -1.176 20.235 Atomic orbital electron populations 1.69745 1.07106 1.29557 1.50134 1.25284 0.95830 1.02222 0.95552 0.85243 0.79530 0.77173 0.78992 1.19894 1.19867 1.16746 1.20651 0.78020 0.96053 1.52460 0.90265 1.83448 1.21109 1.26504 1.83008 1.19398 0.91389 0.86089 0.97441 1.21205 1.00322 0.92723 1.10102 1.21162 0.95175 0.96581 0.97227 1.21056 0.93291 0.98567 1.05686 1.20926 1.00121 0.89967 0.98039 1.16937 0.86341 0.87556 1.11091 1.41650 1.16400 1.14881 1.52958 1.19463 0.88072 0.90681 0.90899 1.23787 0.91873 0.97345 0.99692 1.68565 1.10018 1.28288 1.04645 1.23564 1.02206 0.86918 0.99506 1.21907 0.94006 0.95487 1.00479 1.17575 0.75851 0.82322 0.76329 1.93250 1.89121 1.96496 1.36523 1.93236 1.27956 1.96359 1.96291 1.93230 1.89699 1.53489 1.78609 1.67542 1.11822 1.29881 1.10644 0.90688 0.86727 0.83984 0.83382 0.84368 0.73089 0.77827 0.77631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.65 13.96 21.61 0.30 -53.35 16 2 C 0.01 0.52 5.49 84.82 0.47 0.98 16 3 Si 0.97 42.20 28.62 68.60 1.96 44.17 16 4 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 5 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 6 H -0.24 -9.74 7.11 99.48 0.71 -9.03 16 7 C -0.40 -22.03 9.94 67.91 0.68 -21.35 16 8 H 0.08 4.69 5.44 -2.91 -0.02 4.68 16 9 O -0.23 -11.55 8.24 -22.78 -0.19 -11.74 16 10 C 0.11 4.73 6.67 22.70 0.15 4.88 16 11 C -0.22 -9.38 9.16 22.37 0.20 -9.18 16 12 C -0.08 -2.76 10.04 22.28 0.22 -2.53 16 13 C -0.17 -5.04 10.04 22.28 0.22 -4.82 16 14 C -0.07 -2.28 8.60 22.38 0.19 -2.08 16 15 C 0.08 2.78 6.24 38.30 0.24 3.02 16 16 N -0.63 -19.60 5.26 -184.76 -0.97 -20.57 16 17 C 0.35 9.57 7.30 133.02 0.97 10.54 16 18 C 0.04 0.95 11.09 84.94 0.94 1.89 16 19 N -0.40 -8.74 10.49 -194.64 -2.04 -10.78 16 20 C 0.04 0.73 10.56 84.61 0.89 1.63 16 21 C 0.02 0.55 6.29 42.48 0.27 0.82 16 22 C 0.54 11.57 3.44 71.24 0.25 11.82 16 23 F -0.17 -4.02 17.30 44.97 0.78 -3.24 16 24 F -0.16 -2.76 16.45 44.97 0.74 -2.02 16 25 F -0.17 -4.10 17.05 44.97 0.77 -3.34 16 26 N -0.48 -13.55 7.00 -180.69 -1.27 -14.82 16 27 H 0.28 15.16 8.31 -92.71 -0.77 14.38 16 28 H 0.11 5.27 5.64 -2.91 -0.02 5.25 16 29 H 0.14 3.83 8.06 -2.91 -0.02 3.81 16 30 H 0.15 3.46 8.06 -2.91 -0.02 3.44 16 31 H 0.14 4.18 6.50 -2.91 -0.02 4.16 16 32 H 0.43 12.16 8.71 -92.70 -0.81 11.35 16 33 H 0.21 3.22 8.06 -2.91 -0.02 3.20 16 34 H 0.21 2.61 7.59 -2.91 -0.02 2.59 16 Total: -1.00 -64.17 316.94 6.18 -57.99 By element: Atomic # 1 Polarization: 21.67 SS G_CDS: 0.40 Total: 22.07 kcal Atomic # 6 Polarization: -10.07 SS G_CDS: 5.70 Total: -4.37 kcal Atomic # 7 Polarization: -95.54 SS G_CDS: -3.98 Total: -99.52 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: -0.19 Total: -11.74 kcal Atomic # 9 Polarization: -10.88 SS G_CDS: 2.28 Total: -8.59 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 1.96 Total: 44.17 kcal Total: -64.17 6.18 -57.99 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212597115.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.780 kcal (2) G-P(sol) polarization free energy of solvation -64.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds