Wall clock time and date at job start Tue Mar 31 2020 14:49:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46906 * 109.47065 * 2 1 4 4 C 1.46901 * 110.99920 * 196.40008 * 3 2 1 5 5 C 1.50697 * 109.47038 * 66.04750 * 4 3 2 6 6 H 1.08001 * 120.00186 * 359.97438 * 5 4 3 7 7 C 1.37875 * 120.00156 * 180.02562 * 5 4 3 8 8 N 1.31516 * 119.99836 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00357 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46951 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.47349 * 119.99727 * 9 7 5 12 12 H 1.48496 * 109.47193 * 239.99847 * 9 7 5 13 13 C 1.46899 * 111.00154 * 72.44652 * 3 2 1 14 14 C 1.50697 * 109.47199 * 199.47282 * 13 3 2 15 15 C 1.38241 * 119.98886 * 263.91100 * 14 13 3 16 16 C 1.38217 * 120.01061 * 179.76703 * 15 14 13 17 17 C 1.50705 * 120.00438 * 180.23929 * 16 15 14 18 18 C 1.38326 * 119.98956 * 0.51027 * 16 15 14 19 19 Br 1.89100 * 120.01008 * 179.72241 * 18 16 15 20 20 C 1.38326 * 119.97558 * 359.74887 * 18 16 15 21 21 C 1.50701 * 120.00181 * 179.97438 * 20 18 16 22 22 C 1.38213 * 119.99294 * 359.97438 * 20 18 16 23 23 H 1.08994 * 109.47529 * 301.23958 * 1 2 3 24 24 H 1.09005 * 109.47234 * 61.24040 * 1 2 3 25 25 H 1.08999 * 109.47347 * 181.23333 * 1 2 3 26 26 H 1.09001 * 109.47554 * 239.99768 * 2 1 3 27 27 H 1.09001 * 109.47011 * 119.99692 * 2 1 3 28 28 H 1.09004 * 109.46915 * 186.04474 * 4 3 2 29 29 H 1.08998 * 109.47232 * 306.04767 * 4 3 2 30 30 H 0.97001 * 120.00318 * 179.97438 * 8 7 5 31 31 H 1.08999 * 109.47051 * 319.47260 * 13 3 2 32 32 H 1.09007 * 109.47249 * 79.46485 * 13 3 2 33 33 H 1.08000 * 119.99450 * 0.02562 * 15 14 13 34 34 H 1.09006 * 109.46551 * 270.27319 * 17 16 15 35 35 H 1.08997 * 109.47294 * 30.27405 * 17 16 15 36 36 H 1.08997 * 109.47166 * 150.27525 * 17 16 15 37 37 H 1.09010 * 109.46856 * 270.02030 * 21 20 18 38 38 H 1.09003 * 109.47449 * 30.01707 * 21 20 18 39 39 H 1.08998 * 109.47562 * 150.01981 * 21 20 18 40 40 H 1.08001 * 119.99612 * 180.02562 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4355 1.4428 -0.3872 5 6 3.5815 1.0110 -1.8236 6 1 2.7097 0.7221 -2.3919 7 6 4.8280 0.9837 -2.4120 8 7 5.8897 1.3351 -1.7199 9 14 5.0091 0.4477 -4.1923 10 1 3.6736 0.1063 -4.7447 11 1 5.6037 1.5542 -4.9844 12 1 5.8938 -0.7428 -4.2633 13 6 1.8052 2.0193 1.3075 14 6 1.8594 3.5174 1.1541 15 6 3.0360 4.1962 1.4112 16 6 3.0875 5.5697 1.2659 17 6 4.3717 6.3090 1.5410 18 6 1.9588 6.2664 0.8735 19 35 2.0266 8.1465 0.6823 20 6 0.7803 5.5873 0.6216 21 6 -0.4500 6.3458 0.1946 22 6 0.7312 4.2132 0.7616 23 1 -0.3634 0.5329 0.8786 24 1 -0.3634 0.4945 -0.9009 25 1 -0.3634 -1.0274 0.0221 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.8013 2.4636 -0.2758 29 1 4.0147 0.7774 0.2529 30 1 6.7668 1.3155 -2.1337 31 1 0.8292 1.7290 1.6964 32 1 2.5827 1.6964 1.9999 33 1 3.9161 3.6527 1.7215 34 1 4.4070 6.5972 2.5916 35 1 5.2191 5.6625 1.3129 36 1 4.4177 7.2018 0.9175 37 1 -1.0202 6.6390 1.0762 38 1 -0.1537 7.2366 -0.3592 39 1 -1.0659 5.7104 -0.4417 40 1 -0.1888 3.6829 0.5645 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001232520974.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:13 Heat of formation + Delta-G solvation = 13.854579 kcal Electronic energy + Delta-G solvation = -19931.814949 eV Core-core repulsion = 16985.032290 eV Total energy + Delta-G solvation = -2946.782659 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 325.074 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.53802 -36.91960 -33.46803 -33.11188 -32.52912 -30.40526 -29.59432 -27.67321 -26.57871 -26.44047 -24.48396 -22.39851 -20.82068 -20.61748 -19.41388 -16.46615 -15.88500 -15.82413 -15.01014 -14.55777 -14.40752 -13.98059 -13.75722 -13.50696 -13.09190 -12.83502 -12.66013 -12.39706 -12.28690 -12.13447 -12.01695 -11.56217 -11.49421 -11.21935 -11.07556 -10.90154 -10.73835 -10.67190 -10.57321 -10.41606 -10.13723 -9.81809 -9.78609 -9.16348 -8.44683 -8.29070 -8.20148 -7.27448 -6.02707 -4.03021 1.40686 1.60924 1.84593 3.30777 3.38499 3.43027 3.83802 4.43695 4.90799 4.92574 4.95850 5.20575 5.33759 5.48828 5.51336 5.59343 5.65831 5.68037 5.71914 5.78812 5.81616 5.92839 5.93163 6.00298 6.06043 6.11169 6.24758 6.36042 6.41643 6.57777 6.63204 6.69216 6.76658 6.94661 7.15970 7.31150 7.33160 7.80412 8.09341 8.19666 8.53777 9.04380 9.60834 11.08290 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.013759 B = 0.004223 C = 0.003658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.470845 B = 6629.154841 C = 7652.026570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.056 3.944 3 N -0.530 5.530 4 C 0.190 3.810 5 C -0.505 4.505 6 H 0.063 0.937 7 C 0.056 3.944 8 N -0.898 5.898 9 Si 0.895 3.105 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.285 1.285 13 C 0.085 3.915 14 C -0.032 4.032 15 C -0.105 4.105 16 C -0.054 4.054 17 C -0.123 4.123 18 C -0.100 4.100 19 Br -0.065 7.065 20 C -0.060 4.060 21 C -0.120 4.120 22 C -0.102 4.102 23 H 0.044 0.956 24 H 0.058 0.942 25 H 0.047 0.953 26 H 0.087 0.913 27 H 0.018 0.982 28 H 0.037 0.963 29 H -0.011 1.011 30 H 0.260 0.740 31 H 0.073 0.927 32 H 0.036 0.964 33 H 0.128 0.872 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.070 0.930 40 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.843 11.031 8.477 17.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.072 4.072 3 N -0.255 5.255 4 C 0.065 3.935 5 C -0.543 4.543 6 H 0.081 0.919 7 C -0.145 4.145 8 N -0.538 5.538 9 Si 0.723 3.277 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.211 1.211 13 C -0.043 4.043 14 C -0.033 4.033 15 C -0.124 4.124 16 C -0.056 4.056 17 C -0.179 4.179 18 C -0.179 4.179 19 Br 0.020 6.980 20 C -0.062 4.062 21 C -0.176 4.176 22 C -0.121 4.121 23 H 0.063 0.937 24 H 0.077 0.923 25 H 0.066 0.934 26 H 0.105 0.895 27 H 0.036 0.964 28 H 0.055 0.945 29 H 0.007 0.993 30 H 0.070 0.930 31 H 0.091 0.909 32 H 0.054 0.946 33 H 0.146 0.854 34 H 0.090 0.910 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.089 0.911 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -9.889 12.006 8.031 17.505 hybrid contribution 0.821 -1.195 -0.409 1.507 sum -9.068 10.811 7.621 16.037 Atomic orbital electron populations 1.21818 0.96662 1.00171 1.01586 1.21980 0.94072 0.90135 1.01042 1.62151 1.23532 1.15917 1.23855 1.19808 0.80720 0.97217 0.95761 1.21183 0.92858 1.43829 0.96470 0.91877 1.24963 0.95859 0.95647 0.98051 1.69960 0.98547 1.48717 1.36536 0.86490 0.78109 0.78164 0.84972 1.19668 1.21033 1.21137 1.21074 1.00601 0.89964 0.92632 1.19930 0.92814 0.95782 0.94789 1.20967 0.98026 0.92577 1.00878 1.19676 0.94314 0.93843 0.97719 1.20957 0.94342 1.00535 1.02084 1.21447 0.96580 0.89027 1.10862 1.96525 1.98740 1.05695 1.96996 1.19657 0.94073 0.93983 0.98516 1.20925 0.94897 1.00260 1.01546 1.20756 0.98846 0.92096 1.00391 0.93677 0.92258 0.93386 0.89461 0.96405 0.94539 0.99349 0.93045 0.90905 0.94627 0.85378 0.90994 0.90726 0.90835 0.91043 0.90869 0.91138 0.85546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 10.00 37.16 0.37 -1.80 16 2 C 0.06 1.05 5.52 -3.82 -0.02 1.03 16 3 N -0.53 -11.06 4.37 -237.51 -1.04 -12.10 16 4 C 0.19 4.84 4.55 -4.98 -0.02 4.82 16 5 C -0.50 -14.06 8.28 -34.44 -0.29 -14.34 16 6 H 0.06 1.75 7.26 -52.49 -0.38 1.37 16 7 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -26.48 13.29 55.43 0.74 -25.75 16 9 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 10 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 13 C 0.09 1.49 4.96 -4.98 -0.02 1.47 16 14 C -0.03 -0.56 5.02 -104.62 -0.52 -1.08 16 15 C -0.11 -1.83 8.07 -39.59 -0.32 -2.15 16 16 C -0.05 -0.86 5.88 -104.60 -0.62 -1.48 16 17 C -0.12 -1.68 9.55 36.01 0.34 -1.34 16 18 C -0.10 -1.54 6.22 -39.52 -0.25 -1.79 16 19 Br -0.07 -0.85 29.87 -68.01 -2.03 -2.88 16 20 C -0.06 -0.90 5.88 -104.60 -0.62 -1.52 16 21 C -0.12 -1.41 9.55 36.01 0.34 -1.07 16 22 C -0.10 -1.60 9.38 -39.59 -0.37 -1.97 16 23 H 0.04 0.61 6.53 -51.93 -0.34 0.27 16 24 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 25 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.09 1.82 6.58 -51.93 -0.34 1.48 16 27 H 0.02 0.32 8.05 -51.93 -0.42 -0.10 16 28 H 0.04 0.99 6.36 -51.93 -0.33 0.66 16 29 H -0.01 -0.31 8.12 -51.93 -0.42 -0.73 16 30 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 31 H 0.07 1.10 6.24 -51.93 -0.32 0.78 16 32 H 0.04 0.63 7.91 -51.92 -0.41 0.22 16 33 H 0.13 2.24 8.01 -52.49 -0.42 1.82 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.07 1.04 8.09 -51.93 -0.42 0.62 16 36 H 0.07 0.98 6.65 -51.93 -0.35 0.63 16 37 H 0.07 0.73 8.14 -51.92 -0.42 0.31 16 38 H 0.07 0.86 6.65 -51.93 -0.35 0.51 16 39 H 0.07 0.77 8.09 -51.93 -0.42 0.35 16 40 H 0.13 1.79 8.06 -52.49 -0.42 1.37 16 LS Contribution 340.17 15.07 5.13 5.13 Total: -1.00 -29.53 340.17 -10.48 -40.01 By element: Atomic # 1 Polarization: 4.81 SS G_CDS: -6.17 Total: -1.36 kcal Atomic # 6 Polarization: -17.64 SS G_CDS: -2.08 Total: -19.73 kcal Atomic # 7 Polarization: -37.55 SS G_CDS: -0.30 Total: -37.85 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Atomic # 35 Polarization: -0.85 SS G_CDS: -2.03 Total: -2.88 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -29.53 -10.48 -40.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232520974.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.861 kcal (2) G-P(sol) polarization free energy of solvation -29.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.007 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds