Wall clock time and date at job start Tue Mar 31 2020 14:49:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46906 * 109.47065 * 2 1 4 4 C 1.46901 * 110.99920 * 196.40008 * 3 2 1 5 5 C 1.50697 * 109.47038 * 66.04750 * 4 3 2 6 6 H 1.08001 * 120.00186 * 359.97438 * 5 4 3 7 7 C 1.37875 * 120.00156 * 180.02562 * 5 4 3 8 8 N 1.31516 * 119.99836 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00357 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46951 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.47349 * 119.99727 * 9 7 5 12 12 H 1.48496 * 109.47193 * 239.99847 * 9 7 5 13 13 C 1.46899 * 111.00154 * 72.44652 * 3 2 1 14 14 C 1.50697 * 109.47199 * 199.47282 * 13 3 2 15 15 C 1.38241 * 119.98886 * 263.91100 * 14 13 3 16 16 C 1.38217 * 120.01061 * 179.76703 * 15 14 13 17 17 C 1.50705 * 120.00438 * 180.23929 * 16 15 14 18 18 C 1.38326 * 119.98956 * 0.51027 * 16 15 14 19 19 Br 1.89100 * 120.01008 * 179.72241 * 18 16 15 20 20 C 1.38326 * 119.97558 * 359.74887 * 18 16 15 21 21 C 1.50701 * 120.00181 * 179.97438 * 20 18 16 22 22 C 1.38213 * 119.99294 * 359.97438 * 20 18 16 23 23 H 1.08994 * 109.47529 * 301.23958 * 1 2 3 24 24 H 1.09005 * 109.47234 * 61.24040 * 1 2 3 25 25 H 1.08999 * 109.47347 * 181.23333 * 1 2 3 26 26 H 1.09001 * 109.47554 * 239.99768 * 2 1 3 27 27 H 1.09001 * 109.47011 * 119.99692 * 2 1 3 28 28 H 1.09004 * 109.46915 * 186.04474 * 4 3 2 29 29 H 1.08998 * 109.47232 * 306.04767 * 4 3 2 30 30 H 0.97001 * 120.00318 * 179.97438 * 8 7 5 31 31 H 1.08999 * 109.47051 * 319.47260 * 13 3 2 32 32 H 1.09007 * 109.47249 * 79.46485 * 13 3 2 33 33 H 1.08000 * 119.99450 * 0.02562 * 15 14 13 34 34 H 1.09006 * 109.46551 * 270.27319 * 17 16 15 35 35 H 1.08997 * 109.47294 * 30.27405 * 17 16 15 36 36 H 1.08997 * 109.47166 * 150.27525 * 17 16 15 37 37 H 1.09010 * 109.46856 * 270.02030 * 21 20 18 38 38 H 1.09003 * 109.47449 * 30.01707 * 21 20 18 39 39 H 1.08998 * 109.47562 * 150.01981 * 21 20 18 40 40 H 1.08001 * 119.99612 * 180.02562 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4355 1.4428 -0.3872 5 6 3.5815 1.0110 -1.8236 6 1 2.7097 0.7221 -2.3919 7 6 4.8280 0.9837 -2.4120 8 7 5.8897 1.3351 -1.7199 9 14 5.0091 0.4477 -4.1923 10 1 3.6736 0.1063 -4.7447 11 1 5.6037 1.5542 -4.9844 12 1 5.8938 -0.7428 -4.2633 13 6 1.8052 2.0193 1.3075 14 6 1.8594 3.5174 1.1541 15 6 3.0360 4.1962 1.4112 16 6 3.0875 5.5697 1.2659 17 6 4.3717 6.3090 1.5410 18 6 1.9588 6.2664 0.8735 19 35 2.0266 8.1465 0.6823 20 6 0.7803 5.5873 0.6216 21 6 -0.4500 6.3458 0.1946 22 6 0.7312 4.2132 0.7616 23 1 -0.3634 0.5329 0.8786 24 1 -0.3634 0.4945 -0.9009 25 1 -0.3634 -1.0274 0.0221 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.8013 2.4636 -0.2758 29 1 4.0147 0.7774 0.2529 30 1 6.7668 1.3155 -2.1337 31 1 0.8292 1.7290 1.6964 32 1 2.5827 1.6964 1.9999 33 1 3.9161 3.6527 1.7215 34 1 4.4070 6.5972 2.5916 35 1 5.2191 5.6625 1.3129 36 1 4.4177 7.2018 0.9175 37 1 -1.0202 6.6390 1.0762 38 1 -0.1537 7.2366 -0.3592 39 1 -1.0659 5.7104 -0.4417 40 1 -0.1888 3.6829 0.5645 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001232520974.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:12 Heat of formation + Delta-G solvation = -1.444186 kcal Electronic energy + Delta-G solvation = -19932.478354 eV Core-core repulsion = 16985.032290 eV Total energy + Delta-G solvation = -2947.446064 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 325.074 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.78683 -38.49540 -34.88832 -34.59861 -34.13519 -31.69929 -31.05058 -29.18315 -27.91276 -27.67008 -26.06080 -24.20483 -22.23342 -21.81792 -20.88868 -18.54382 -17.21488 -17.10608 -16.68038 -16.13583 -16.01326 -15.36798 -15.12054 -14.82754 -14.29031 -14.09491 -14.01105 -13.94072 -13.68348 -13.42465 -13.41796 -12.94143 -12.78350 -12.71656 -12.56604 -12.46901 -12.35218 -12.12922 -12.05095 -11.79135 -11.69187 -11.47426 -11.16278 -10.90033 -10.60720 -9.51131 -9.43733 -8.99189 -8.19683 -6.28147 0.15783 0.37857 0.68077 1.38578 1.39912 1.52669 2.39295 2.57892 3.13430 3.45148 3.74810 3.80501 3.86213 4.20772 4.31012 4.33503 4.46370 4.51353 4.54672 4.60645 4.63983 4.70965 4.77209 4.81358 4.84670 4.92467 5.06945 5.13546 5.16960 5.21557 5.29728 5.37578 5.38904 5.43375 5.49135 5.64190 5.69798 5.94357 6.08901 6.38538 6.64825 6.88266 7.40753 8.91445 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.013759 B = 0.004223 C = 0.003658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.470845 B = 6629.154841 C = 7652.026570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.052 3.948 3 N -0.534 5.534 4 C 0.208 3.792 5 C -0.519 4.519 6 H 0.061 0.939 7 C 0.003 3.997 8 N -0.933 5.933 9 Si 0.963 3.037 10 H -0.263 1.263 11 H -0.281 1.281 12 H -0.278 1.278 13 C 0.089 3.911 14 C -0.050 4.050 15 C -0.128 4.128 16 C -0.064 4.064 17 C -0.120 4.120 18 C -0.113 4.113 19 Br -0.040 7.040 20 C -0.061 4.061 21 C -0.117 4.117 22 C -0.106 4.106 23 H 0.063 0.937 24 H 0.053 0.947 25 H 0.071 0.929 26 H 0.059 0.941 27 H 0.021 0.979 28 H 0.013 0.987 29 H -0.044 1.044 30 H 0.263 0.737 31 H 0.103 0.897 32 H 0.026 0.974 33 H 0.111 0.889 34 H 0.091 0.909 35 H 0.064 0.936 36 H 0.079 0.921 37 H 0.091 0.909 38 H 0.074 0.926 39 H 0.082 0.918 40 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.960 11.682 7.967 18.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.076 4.076 3 N -0.258 5.258 4 C 0.082 3.918 5 C -0.557 4.557 6 H 0.079 0.921 7 C -0.195 4.195 8 N -0.573 5.573 9 Si 0.788 3.212 10 H -0.187 1.187 11 H -0.207 1.207 12 H -0.203 1.203 13 C -0.039 4.039 14 C -0.051 4.051 15 C -0.148 4.148 16 C -0.066 4.066 17 C -0.176 4.176 18 C -0.193 4.193 19 Br 0.045 6.955 20 C -0.063 4.063 21 C -0.174 4.174 22 C -0.126 4.126 23 H 0.082 0.918 24 H 0.072 0.928 25 H 0.090 0.910 26 H 0.078 0.922 27 H 0.039 0.961 28 H 0.031 0.969 29 H -0.026 1.026 30 H 0.071 0.929 31 H 0.121 0.879 32 H 0.044 0.956 33 H 0.129 0.871 34 H 0.110 0.890 35 H 0.083 0.917 36 H 0.097 0.903 37 H 0.110 0.890 38 H 0.093 0.907 39 H 0.101 0.899 40 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -12.029 12.654 7.531 19.014 hybrid contribution 1.467 -1.335 -0.192 1.993 sum -10.562 11.319 7.339 17.133 Atomic orbital electron populations 1.21714 0.93032 1.02033 1.02165 1.22046 0.96940 0.88703 0.99865 1.62087 1.20138 1.17441 1.26172 1.19401 0.83269 0.94737 0.94419 1.21486 0.92947 1.43725 0.97550 0.92124 1.25844 0.95521 0.95618 1.02517 1.70086 0.99069 1.49716 1.38474 0.85427 0.78414 0.77856 0.79520 1.18723 1.20681 1.20341 1.21127 1.01772 0.90226 0.90753 1.19997 0.93514 0.95574 0.95977 1.20971 0.97855 0.93489 1.02479 1.19924 0.95594 0.93557 0.97557 1.20975 0.93014 1.00190 1.03454 1.21701 0.96531 0.90590 1.10430 1.96529 1.98733 1.03318 1.96901 1.20068 0.95070 0.93974 0.97175 1.20991 0.93734 1.00067 1.02583 1.20973 0.98869 0.92675 1.00041 0.91811 0.92789 0.90994 0.92205 0.96095 0.96906 1.02618 0.92854 0.87866 0.95604 0.87086 0.89019 0.91747 0.90255 0.89044 0.90725 0.89932 0.83696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.64 10.00 71.98 0.72 -2.92 16 2 C 0.05 1.95 5.52 86.30 0.48 2.43 16 3 N -0.53 -22.59 4.37 -905.35 -3.96 -26.55 16 4 C 0.21 11.09 4.55 85.56 0.39 11.48 16 5 C -0.52 -29.62 8.28 25.60 0.21 -29.41 16 6 H 0.06 3.42 7.26 -2.91 -0.02 3.40 16 7 C 0.00 0.17 5.46 84.65 0.46 0.63 16 8 N -0.93 -56.57 13.29 21.45 0.28 -56.28 16 9 Si 0.96 44.87 29.54 68.60 2.03 46.90 16 10 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 11 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 12 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 13 C 0.09 3.12 4.96 85.56 0.42 3.54 16 14 C -0.05 -1.73 5.02 -19.87 -0.10 -1.83 16 15 C -0.13 -4.66 8.07 22.27 0.18 -4.48 16 16 C -0.06 -2.10 5.88 -19.85 -0.12 -2.21 16 17 C -0.12 -3.31 9.55 71.24 0.68 -2.63 16 18 C -0.11 -3.37 6.22 22.31 0.14 -3.24 16 19 Br -0.04 -0.98 29.87 -20.37 -0.61 -1.59 16 20 C -0.06 -1.72 5.88 -19.85 -0.12 -1.83 16 21 C -0.12 -2.44 9.55 71.24 0.68 -1.76 16 22 C -0.11 -3.21 9.38 22.26 0.21 -3.00 16 23 H 0.06 1.52 6.53 -2.39 -0.02 1.51 16 24 H 0.05 1.56 8.14 -2.38 -0.02 1.54 16 25 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 26 H 0.06 2.54 6.58 -2.39 -0.02 2.53 16 27 H 0.02 0.76 8.05 -2.39 -0.02 0.74 16 28 H 0.01 0.74 6.36 -2.38 -0.02 0.73 16 29 H -0.04 -2.56 8.12 -2.39 -0.02 -2.58 16 30 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 31 H 0.10 2.95 6.24 -2.39 -0.01 2.93 16 32 H 0.03 0.95 7.91 -2.38 -0.02 0.93 16 33 H 0.11 4.25 8.01 -2.91 -0.02 4.23 16 34 H 0.09 2.13 8.14 -2.38 -0.02 2.11 16 35 H 0.06 1.88 8.09 -2.39 -0.02 1.86 16 36 H 0.08 2.06 6.65 -2.39 -0.02 2.05 16 37 H 0.09 1.56 8.14 -2.38 -0.02 1.54 16 38 H 0.07 1.54 6.65 -2.39 -0.02 1.52 16 39 H 0.08 1.53 8.09 -2.39 -0.02 1.51 16 40 H 0.15 3.73 8.06 -2.91 -0.02 3.70 16 Total: -1.00 -64.74 340.17 3.00 -61.74 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: 1.02 Total: 11.01 kcal Atomic # 6 Polarization: -39.46 SS G_CDS: 4.24 Total: -35.22 kcal Atomic # 7 Polarization: -79.16 SS G_CDS: -3.67 Total: -82.83 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Atomic # 35 Polarization: -0.98 SS G_CDS: -0.61 Total: -1.59 kcal Total: -64.74 3.00 -61.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232520974.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.293 kcal (2) G-P(sol) polarization free energy of solvation -64.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds