Wall clock time and date at job start Tue Mar 31 2020 14:49:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46897 * 109.46865 * 2 1 4 4 C 1.46902 * 111.00164 * 72.00980 * 3 2 1 5 5 C 1.50695 * 109.47144 * 285.46253 * 4 3 2 6 6 H 1.08006 * 119.99915 * 354.38726 * 5 4 3 7 7 C 1.37878 * 120.00268 * 174.38620 * 5 4 3 8 8 N 1.31518 * 119.99895 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00070 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.47093 * 60.00329 * 9 7 5 11 11 H 1.48503 * 109.46780 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47512 * 299.99998 * 9 7 5 13 13 C 1.46899 * 110.99909 * 195.96293 * 3 2 1 14 14 C 1.50700 * 109.47174 * 72.41368 * 13 3 2 15 15 C 1.38242 * 119.98798 * 261.80321 * 14 13 3 16 16 C 1.50703 * 119.99471 * 0.02562 * 15 14 13 17 17 C 1.38217 * 120.00963 * 179.76531 * 15 14 13 18 18 C 1.38326 * 119.98784 * 0.51029 * 17 15 14 19 19 Br 1.89109 * 120.00762 * 179.76604 * 18 17 15 20 20 C 1.38324 * 119.97958 * 359.74684 * 18 17 15 21 21 C 1.38212 * 119.99334 * 359.97438 * 20 18 17 22 22 C 1.50690 * 119.99820 * 180.02562 * 21 20 18 23 23 H 1.09005 * 109.46863 * 168.12823 * 1 2 3 24 24 H 1.08991 * 109.47206 * 288.12648 * 1 2 3 25 25 H 1.09004 * 109.47177 * 48.13143 * 1 2 3 26 26 H 1.08999 * 109.47012 * 240.00021 * 2 1 3 27 27 H 1.09002 * 109.46916 * 119.99678 * 2 1 3 28 28 H 1.08997 * 109.47046 * 45.46717 * 4 3 2 29 29 H 1.09005 * 109.46933 * 165.46482 * 4 3 2 30 30 H 0.96996 * 119.99722 * 179.97438 * 8 7 5 31 31 H 1.09004 * 109.47139 * 192.41251 * 13 3 2 32 32 H 1.08996 * 109.47301 * 312.40807 * 13 3 2 33 33 H 1.09005 * 109.47101 * 90.29192 * 16 15 14 34 34 H 1.09001 * 109.47243 * 210.29326 * 16 15 14 35 35 H 1.08997 * 109.47249 * 330.29212 * 16 15 14 36 36 H 1.08003 * 120.00695 * 180.27513 * 17 15 14 37 37 H 1.08000 * 120.00098 * 180.02562 * 20 18 17 38 38 H 1.08997 * 109.47643 * 269.98512 * 22 21 20 39 39 H 1.09003 * 109.46933 * 29.98547 * 22 21 20 40 40 H 1.08998 * 109.47487 * 149.97792 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7958 2.0225 1.3044 5 6 0.3339 2.3552 1.4566 6 1 -0.3440 2.2006 0.6301 7 6 -0.1383 2.8569 2.6509 8 7 0.6872 3.0455 3.6572 9 14 -1.9503 3.2699 2.8393 10 1 -2.7624 2.0465 2.6180 11 1 -2.1998 3.7894 4.2080 12 1 -2.3290 4.3026 1.8417 13 6 3.4382 1.4418 -0.3772 14 6 3.5780 1.1583 -1.8506 15 6 3.9197 -0.1103 -2.2808 16 6 4.1517 -1.2095 -1.2761 17 6 4.0433 -0.3721 -3.6323 18 6 3.8354 0.6381 -4.5540 19 35 4.0109 0.2822 -6.4030 20 6 3.4988 1.9086 -4.1229 21 6 3.3697 2.1681 -2.7715 22 6 3.0025 3.5520 -2.3017 23 1 -0.3633 -1.0057 -0.2114 24 1 -0.3633 0.3197 0.9766 25 1 -0.3634 0.6859 -0.7653 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 2.0978 1.3402 2.0989 29 1 2.3850 2.9374 1.3675 30 1 0.3551 3.3988 4.4973 31 1 3.8327 2.4344 -0.1592 32 1 3.9954 0.6968 0.1907 33 1 3.2135 -1.7301 -1.0841 34 1 4.8840 -1.9138 -1.6708 35 1 4.5254 -0.7794 -0.3469 36 1 4.3059 -1.3643 -3.9684 37 1 3.3360 2.6975 -4.8423 38 1 3.9099 4.1339 -2.1408 39 1 2.3868 4.0405 -3.0570 40 1 2.4448 3.4827 -1.3678 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235787048.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:15 Heat of formation + Delta-G solvation = 22.272277 kcal Electronic energy + Delta-G solvation = -20233.591938 eV Core-core repulsion = 17287.174297 eV Total energy + Delta-G solvation = -2946.417641 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 325.074 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.91927 -36.83485 -33.57885 -33.35163 -32.30067 -30.44947 -29.43972 -27.89603 -26.83748 -26.55364 -24.21699 -22.35684 -20.77787 -20.69415 -19.57622 -16.59888 -16.15477 -15.81820 -15.27565 -14.57265 -14.36126 -13.76875 -13.67116 -13.38461 -13.03005 -12.94618 -12.83964 -12.58260 -12.15826 -12.13635 -11.98499 -11.45721 -11.26727 -11.09514 -11.01880 -10.98831 -10.71874 -10.57380 -10.56147 -10.31359 -10.27866 -10.18399 -9.46578 -9.13565 -8.52118 -8.41369 -8.32111 -7.29048 -6.02960 -4.01474 1.22367 1.40419 1.64221 3.32372 3.37050 3.39736 3.65528 4.42075 4.76635 4.89178 4.97319 5.12190 5.21733 5.31675 5.36333 5.44820 5.61658 5.67594 5.74649 5.91824 5.92204 5.96175 5.99946 6.08675 6.17879 6.26338 6.28099 6.38585 6.46074 6.57380 6.63506 6.84664 6.92281 7.00293 7.15432 7.33079 7.38185 7.82730 8.08737 8.16982 8.52468 9.04690 9.60171 11.07536 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.024205 B = 0.003228 C = 0.003137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.497131 B = 8673.031298 C = 8924.663665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.062 3.938 3 N -0.527 5.527 4 C 0.192 3.808 5 C -0.501 4.501 6 H 0.072 0.928 7 C 0.054 3.946 8 N -0.901 5.901 9 Si 0.893 3.107 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.277 1.277 13 C 0.082 3.918 14 C -0.047 4.047 15 C -0.074 4.074 16 C -0.121 4.121 17 C -0.102 4.102 18 C -0.088 4.088 19 Br -0.068 7.068 20 C -0.102 4.102 21 C -0.049 4.049 22 C -0.122 4.122 23 H 0.028 0.972 24 H 0.085 0.915 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.021 0.979 28 H -0.003 1.003 29 H 0.024 0.976 30 H 0.261 0.739 31 H 0.080 0.920 32 H 0.039 0.961 33 H 0.077 0.923 34 H 0.063 0.937 35 H 0.074 0.926 36 H 0.126 0.874 37 H 0.127 0.873 38 H 0.065 0.935 39 H 0.062 0.938 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.794 -6.285 -16.714 19.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.066 4.066 3 N -0.252 5.252 4 C 0.067 3.933 5 C -0.540 4.540 6 H 0.090 0.910 7 C -0.147 4.147 8 N -0.540 5.540 9 Si 0.721 3.279 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.202 1.202 13 C -0.046 4.046 14 C -0.048 4.048 15 C -0.076 4.076 16 C -0.177 4.177 17 C -0.122 4.122 18 C -0.167 4.167 19 Br 0.017 6.983 20 C -0.122 4.122 21 C -0.051 4.051 22 C -0.179 4.179 23 H 0.047 0.953 24 H 0.104 0.896 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.039 0.961 28 H 0.015 0.985 29 H 0.042 0.958 30 H 0.070 0.930 31 H 0.098 0.902 32 H 0.057 0.943 33 H 0.095 0.905 34 H 0.082 0.918 35 H 0.093 0.907 36 H 0.144 0.856 37 H 0.145 0.855 38 H 0.084 0.916 39 H 0.081 0.919 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 8.590 -6.083 -17.544 20.459 hybrid contribution -0.542 -0.134 1.100 1.233 sum 8.048 -6.217 -16.444 19.335 Atomic orbital electron populations 1.22019 0.95131 0.98526 1.04585 1.22033 0.96744 0.89457 0.98338 1.62201 1.12419 1.16307 1.34232 1.19817 0.97551 0.93424 0.82514 1.21295 0.93513 1.41220 0.97949 0.91003 1.24984 0.97709 0.96061 0.95966 1.69947 1.34687 1.45953 1.03462 0.86634 0.85399 0.78841 0.77003 1.20253 1.21488 1.20208 1.21142 0.92193 1.01375 0.89900 1.19865 0.96404 0.92078 0.96419 1.19734 0.99416 0.94876 0.93551 1.21018 1.02301 0.96377 0.98039 1.20812 1.01375 0.98143 0.91902 1.21582 1.08778 0.96854 0.89499 1.96641 1.97146 1.95890 1.08577 1.20926 1.00504 0.94991 0.95803 1.19764 0.96903 0.96688 0.91703 1.20923 1.01522 0.91570 1.03861 0.95273 0.89597 0.92704 0.92640 0.96094 0.98513 0.95826 0.92966 0.90197 0.94310 0.90461 0.91783 0.90716 0.85626 0.85502 0.91603 0.91891 0.88375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.81 8.49 37.16 0.32 -2.50 16 2 C 0.06 1.17 5.06 -3.82 -0.02 1.15 16 3 N -0.53 -10.53 3.92 -237.52 -0.93 -11.46 16 4 C 0.19 4.67 4.75 -4.98 -0.02 4.65 16 5 C -0.50 -13.20 6.87 -34.44 -0.24 -13.44 16 6 H 0.07 1.88 5.83 -52.48 -0.31 1.57 16 7 C 0.05 1.46 5.46 -17.82 -0.10 1.37 16 8 N -0.90 -25.92 13.29 55.43 0.74 -25.18 16 9 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 10 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 13 C 0.08 1.38 4.01 -4.98 -0.02 1.36 16 14 C -0.05 -0.71 4.90 -104.62 -0.51 -1.23 16 15 C -0.07 -1.02 5.14 -104.63 -0.54 -1.56 16 16 C -0.12 -1.43 8.65 36.01 0.31 -1.12 16 17 C -0.10 -1.33 9.45 -39.56 -0.37 -1.70 16 18 C -0.09 -1.16 6.22 -39.52 -0.25 -1.40 16 19 Br -0.07 -0.77 33.70 -68.01 -2.29 -3.07 16 20 C -0.10 -1.39 9.44 -39.56 -0.37 -1.76 16 21 C -0.05 -0.72 5.88 -104.63 -0.62 -1.34 16 22 C -0.12 -1.73 9.24 36.00 0.33 -1.40 16 23 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.09 1.90 5.87 -51.93 -0.31 1.59 16 25 H 0.05 1.09 7.68 -51.93 -0.40 0.69 16 26 H 0.06 0.93 4.25 -51.93 -0.22 0.71 16 27 H 0.02 0.40 7.83 -51.93 -0.41 0.00 16 28 H 0.00 -0.08 7.81 -51.93 -0.41 -0.49 16 29 H 0.02 0.61 7.67 -51.93 -0.40 0.21 16 30 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 31 H 0.08 1.36 6.71 -51.93 -0.35 1.01 16 32 H 0.04 0.63 5.56 -51.93 -0.29 0.34 16 33 H 0.08 0.92 6.53 -51.93 -0.34 0.59 16 34 H 0.06 0.62 8.09 -51.93 -0.42 0.20 16 35 H 0.07 0.91 5.86 -51.93 -0.30 0.61 16 36 H 0.13 1.40 8.06 -52.48 -0.42 0.97 16 37 H 0.13 1.52 8.06 -52.49 -0.42 1.09 16 38 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.06 0.81 8.09 -51.93 -0.42 0.39 16 40 H 0.10 1.67 6.43 -51.93 -0.33 1.33 16 LS Contribution 330.24 15.07 4.98 4.98 Total: -1.00 -27.64 330.24 -10.35 -37.99 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -5.72 Total: -0.39 kcal Atomic # 6 Polarization: -16.82 SS G_CDS: -2.10 Total: -18.92 kcal Atomic # 7 Polarization: -36.45 SS G_CDS: -0.19 Total: -36.65 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 35 Polarization: -0.77 SS G_CDS: -2.29 Total: -3.07 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -27.64 -10.35 -37.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235787048.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.261 kcal (2) G-P(sol) polarization free energy of solvation -27.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.989 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds