Wall clock time and date at job start Tue Mar 31 2020 14:12:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47039 * 2 1 4 4 C 1.50696 * 109.47116 * 120.00267 * 2 1 3 5 5 C 1.38240 * 119.99497 * 295.22183 * 4 2 1 6 6 C 1.38300 * 119.99226 * 180.02562 * 5 4 2 7 7 Br 1.89095 * 120.01438 * 180.02562 * 6 5 4 8 8 C 1.38351 * 119.97838 * 0.02562 * 6 5 4 9 9 C 1.38202 * 119.98902 * 359.97438 * 8 6 5 10 10 C 1.38220 * 119.99445 * 115.49874 * 4 2 1 11 11 C 1.50695 * 119.99316 * 0.02562 * 10 4 2 12 12 N 1.46900 * 109.46745 * 285.85800 * 11 10 4 13 13 C 1.46899 * 110.99994 * 288.50345 * 12 11 10 14 14 C 1.46901 * 111.00097 * 164.55147 * 12 11 10 15 15 C 1.50707 * 109.47192 * 189.99837 * 14 12 11 16 16 H 1.08001 * 119.99841 * 359.97438 * 15 14 12 17 17 C 1.37874 * 120.00193 * 180.02562 * 15 14 12 18 18 N 1.31517 * 119.99848 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 119.99992 * 180.02562 * 17 15 14 20 20 H 1.48492 * 109.47495 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47324 * 120.00038 * 19 17 15 22 22 H 1.48507 * 109.47011 * 239.99298 * 19 17 15 23 23 H 1.09000 * 109.47550 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47338 * 299.99911 * 1 2 3 25 25 H 1.09003 * 109.47542 * 59.99466 * 1 2 3 26 26 H 1.09002 * 109.46829 * 239.99988 * 2 1 3 27 27 H 1.09003 * 109.47324 * 184.85445 * 3 2 1 28 28 H 1.09000 * 109.47840 * 304.85769 * 3 2 1 29 29 H 1.09001 * 109.47219 * 64.86035 * 3 2 1 30 30 H 1.08002 * 120.00617 * 0.03140 * 5 4 2 31 31 H 1.08001 * 120.00893 * 179.97438 * 8 6 5 32 32 H 1.07995 * 119.99514 * 179.97438 * 9 8 6 33 33 H 1.09005 * 109.47324 * 45.85072 * 11 10 4 34 34 H 1.08995 * 109.47518 * 165.85792 * 11 10 4 35 35 H 1.08997 * 109.47465 * 64.93161 * 13 12 11 36 36 H 1.09004 * 109.47391 * 184.94048 * 13 12 11 37 37 H 1.08998 * 109.47142 * 304.93594 * 13 12 11 38 38 H 1.08996 * 109.46869 * 309.99260 * 14 12 11 39 39 H 1.08995 * 109.47518 * 69.99707 * 14 12 11 40 40 H 0.96993 * 120.00044 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 1.7817 -0.1833 2.4835 6 6 2.2432 -0.8351 3.6126 7 35 1.9001 -0.1150 5.3271 8 6 2.9560 -2.0142 3.4874 9 6 3.2061 -2.5405 2.2342 10 6 2.7485 -1.8860 1.1055 11 6 3.0274 -2.4567 -0.2610 12 7 1.7982 -3.0503 -0.8039 13 6 1.4559 -4.2913 -0.0964 14 6 1.9203 -3.2846 -2.2489 15 6 0.5738 -3.6591 -2.8127 16 1 -0.2866 -3.7176 -2.1625 17 6 0.4404 -3.9281 -4.1584 18 7 1.4882 -3.8574 -4.9501 19 14 -1.2287 -4.3915 -4.8572 20 1 -2.2369 -4.4001 -3.7670 21 1 -1.6250 -3.4014 -5.8906 22 1 -1.1512 -5.7421 -5.4699 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 1.8933 -0.5139 -0.8900 27 1 3.1265 1.4437 -0.0870 28 1 1.6074 1.9809 -0.8432 29 1 1.7495 1.9306 0.9303 30 1 1.2255 0.7373 2.5808 31 1 3.3169 -2.5234 4.3688 32 1 3.7628 -3.4606 2.1363 33 1 3.3704 -1.6620 -0.9236 34 1 3.7980 -3.2237 -0.1842 35 1 1.2173 -4.0635 0.9424 36 1 0.5932 -4.7558 -0.5740 37 1 2.3034 -4.9758 -0.1327 38 1 2.2781 -2.3771 -2.7351 39 1 2.6269 -4.0951 -2.4271 40 1 1.3943 -4.0462 -5.8968 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237731257.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:11 Heat of formation + Delta-G solvation = 14.849946 kcal Electronic energy + Delta-G solvation = -20116.977080 eV Core-core repulsion = 17170.237583 eV Total energy + Delta-G solvation = -2946.739497 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 325.074 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.86463 -36.46230 -35.20620 -32.92233 -32.00637 -29.87312 -29.74586 -27.16416 -26.80598 -26.32350 -23.81184 -23.38613 -21.28466 -20.35999 -19.41609 -16.62633 -16.18128 -15.80606 -14.99234 -14.73728 -14.23796 -14.00390 -13.86440 -13.57030 -13.36385 -13.27073 -12.55587 -12.52104 -12.06867 -11.97550 -11.90707 -11.45971 -11.34615 -11.11857 -10.93635 -10.88881 -10.73170 -10.52542 -10.49927 -10.48430 -10.27429 -10.14604 -9.83291 -9.24500 -8.72434 -8.48069 -8.36231 -7.30704 -6.06012 -4.07063 1.21843 1.42474 1.64258 3.28785 3.36778 3.41297 3.69851 4.40719 4.77684 4.84976 4.97622 5.16681 5.26831 5.30773 5.32264 5.47363 5.52387 5.65463 5.78197 5.82393 5.91570 6.03494 6.11818 6.12008 6.18446 6.20736 6.23551 6.30620 6.33437 6.41101 6.64921 6.73354 6.76134 6.92357 6.97863 7.22442 7.29624 7.76203 8.02433 8.14286 8.49026 9.00935 9.57435 11.04870 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.023409 B = 0.003252 C = 0.003142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.816481 B = 8608.184088 C = 8910.022035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.058 4.058 3 C -0.145 4.145 4 C -0.040 4.040 5 C -0.091 4.091 6 C -0.094 4.094 7 Br -0.068 7.068 8 C -0.101 4.101 9 C -0.110 4.110 10 C -0.046 4.046 11 C 0.085 3.915 12 N -0.528 5.528 13 C 0.037 3.963 14 C 0.192 3.808 15 C -0.504 4.504 16 H 0.064 0.936 17 C 0.056 3.944 18 N -0.899 5.899 19 Si 0.896 3.104 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.285 1.285 23 H 0.069 0.931 24 H 0.041 0.959 25 H 0.055 0.945 26 H 0.101 0.899 27 H 0.051 0.949 28 H 0.058 0.942 29 H 0.050 0.950 30 H 0.128 0.872 31 H 0.126 0.874 32 H 0.126 0.874 33 H 0.081 0.919 34 H 0.034 0.966 35 H 0.045 0.955 36 H 0.076 0.924 37 H 0.010 0.990 38 H 0.030 0.970 39 H -0.009 1.009 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.124 8.234 18.426 20.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.077 4.077 3 C -0.203 4.203 4 C -0.042 4.042 5 C -0.110 4.110 6 C -0.173 4.173 7 Br 0.017 6.983 8 C -0.121 4.121 9 C -0.129 4.129 10 C -0.047 4.047 11 C -0.043 4.043 12 N -0.253 5.253 13 C -0.112 4.112 14 C 0.068 3.932 15 C -0.543 4.543 16 H 0.082 0.918 17 C -0.145 4.145 18 N -0.538 5.538 19 Si 0.724 3.276 20 H -0.196 1.196 21 H -0.210 1.210 22 H -0.212 1.212 23 H 0.088 0.912 24 H 0.061 0.939 25 H 0.074 0.926 26 H 0.119 0.881 27 H 0.070 0.930 28 H 0.077 0.923 29 H 0.069 0.931 30 H 0.145 0.855 31 H 0.144 0.856 32 H 0.144 0.856 33 H 0.099 0.901 34 H 0.052 0.948 35 H 0.063 0.937 36 H 0.095 0.905 37 H 0.028 0.972 38 H 0.048 0.952 39 H 0.008 0.992 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.659 8.812 18.933 21.052 hybrid contribution -0.068 -1.092 -0.910 1.423 sum 2.591 7.720 18.024 19.778 Atomic orbital electron populations 1.21717 0.93868 1.02965 1.00519 1.20190 0.96595 0.94761 0.96114 1.21913 1.00852 0.95982 1.01508 1.19740 0.95824 0.94442 0.94188 1.20896 0.99601 0.99818 0.90719 1.21621 1.06057 0.99100 0.90524 1.96643 1.95232 1.85203 1.21243 1.20946 0.98562 0.94542 0.98036 1.21055 1.00648 0.99815 0.91416 1.20050 0.95282 0.93766 0.95580 1.21097 0.92836 0.98611 0.91779 1.62157 1.30006 1.26428 1.06665 1.22242 1.00472 0.90967 0.97513 1.19765 0.97151 0.95878 0.80451 1.21167 0.94570 1.45599 0.92940 0.91770 1.24970 0.96751 0.95741 0.97070 1.69963 1.29148 1.49858 1.04859 0.86477 0.84154 0.77954 0.79061 1.19649 1.21021 1.21171 0.91233 0.93948 0.92578 0.88119 0.92964 0.92291 0.93082 0.85456 0.85629 0.85616 0.90065 0.94829 0.93663 0.90542 0.97180 0.95213 0.99161 0.92989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.95 9.05 37.16 0.34 -1.62 16 2 C -0.06 -0.85 2.82 -91.78 -0.26 -1.11 16 3 C -0.15 -1.77 9.04 37.16 0.34 -1.43 16 4 C -0.04 -0.58 4.78 -104.63 -0.50 -1.09 16 5 C -0.09 -1.20 8.44 -39.56 -0.33 -1.53 16 6 C -0.09 -1.20 6.22 -39.52 -0.25 -1.45 16 7 Br -0.07 -0.77 33.70 -68.01 -2.29 -3.06 16 8 C -0.10 -1.25 9.79 -39.55 -0.39 -1.64 16 9 C -0.11 -1.46 9.42 -39.59 -0.37 -1.83 16 10 C -0.05 -0.69 4.65 -104.62 -0.49 -1.17 16 11 C 0.08 1.43 4.20 -4.98 -0.02 1.41 16 12 N -0.53 -10.60 4.25 -245.83 -1.05 -11.64 16 13 C 0.04 0.69 9.24 60.06 0.56 1.25 16 14 C 0.19 4.74 4.72 -4.97 -0.02 4.72 16 15 C -0.50 -13.57 8.39 -34.44 -0.29 -13.86 16 16 H 0.06 1.73 7.17 -52.49 -0.38 1.35 16 17 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 18 N -0.90 -26.03 13.29 55.43 0.74 -25.29 16 19 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 16 20 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 23 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 24 H 0.04 0.54 7.68 -51.93 -0.40 0.14 16 25 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.10 1.71 5.52 -51.93 -0.29 1.42 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.05 0.56 6.96 -51.93 -0.36 0.20 16 30 H 0.13 1.54 7.07 -52.49 -0.37 1.17 16 31 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 32 H 0.13 1.49 8.00 -52.49 -0.42 1.07 16 33 H 0.08 1.38 6.65 -51.93 -0.35 1.04 16 34 H 0.03 0.55 7.77 -51.93 -0.40 0.15 16 35 H 0.04 0.77 7.40 -51.93 -0.38 0.39 16 36 H 0.08 1.57 6.66 -51.93 -0.35 1.22 16 37 H 0.01 0.18 8.02 -51.93 -0.42 -0.24 16 38 H 0.03 0.78 7.87 -51.93 -0.41 0.37 16 39 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 40 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 342.14 15.07 5.16 5.16 Total: -1.00 -27.76 342.14 -10.44 -38.20 By element: Atomic # 1 Polarization: 4.54 SS G_CDS: -6.19 Total: -1.64 kcal Atomic # 6 Polarization: -16.11 SS G_CDS: -1.79 Total: -17.90 kcal Atomic # 7 Polarization: -36.62 SS G_CDS: -0.31 Total: -36.93 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 35 Polarization: -0.77 SS G_CDS: -2.29 Total: -3.06 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -27.76 -10.44 -38.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237731257.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.052 kcal (2) G-P(sol) polarization free energy of solvation -27.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds