Wall clock time and date at job start Tue Mar 31 2020 14:49:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46895 * 109.47108 * 2 1 4 4 C 1.46897 * 111.00369 * 299.33610 * 3 2 1 5 5 C 1.50697 * 109.46864 * 293.55440 * 4 3 2 6 6 H 1.08003 * 120.00089 * 354.96211 * 5 4 3 7 7 C 1.37881 * 119.99881 * 174.96821 * 5 4 3 8 8 N 1.31514 * 120.00151 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99763 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47318 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.46869 * 120.00107 * 9 7 5 12 12 H 1.48497 * 109.47215 * 239.99549 * 9 7 5 13 13 C 1.46905 * 110.99842 * 63.28502 * 3 2 1 14 14 C 1.50708 * 109.46872 * 66.04766 * 13 3 2 15 15 C 1.38267 * 119.98878 * 260.00045 * 14 13 3 16 16 C 1.38189 * 120.00848 * 179.97438 * 15 14 13 17 17 C 1.50707 * 120.00230 * 180.02562 * 16 15 14 18 18 C 1.38349 * 119.99113 * 359.97438 * 16 15 14 19 19 Br 1.89103 * 120.00922 * 179.97438 * 18 16 15 20 20 C 1.38299 * 119.98130 * 359.97438 * 18 16 15 21 21 C 1.38213 * 119.99136 * 79.72139 * 14 13 3 22 22 C 1.50702 * 119.99458 * 0.02562 * 21 14 13 23 23 H 1.08998 * 109.47301 * 60.62888 * 1 2 3 24 24 H 1.09002 * 109.47054 * 180.62799 * 1 2 3 25 25 H 1.08995 * 109.47144 * 300.62412 * 1 2 3 26 26 H 1.09006 * 109.46567 * 240.00315 * 2 1 3 27 27 H 1.08998 * 109.47141 * 120.00403 * 2 1 3 28 28 H 1.09005 * 109.47359 * 53.55116 * 4 3 2 29 29 H 1.08999 * 109.47027 * 173.55330 * 4 3 2 30 30 H 0.96998 * 120.00220 * 180.02562 * 8 7 5 31 31 H 1.08993 * 109.47393 * 306.05277 * 13 3 2 32 32 H 1.09003 * 109.47275 * 186.04218 * 13 3 2 33 33 H 1.08001 * 119.99427 * 359.97438 * 15 14 13 34 34 H 1.08996 * 109.46691 * 90.00308 * 17 16 15 35 35 H 1.09005 * 109.46655 * 210.00040 * 17 16 15 36 36 H 1.08992 * 109.47041 * 329.99973 * 17 16 15 37 37 H 1.07999 * 120.00536 * 179.97438 * 20 18 16 38 38 H 1.09001 * 109.46965 * 89.99734 * 22 21 14 39 39 H 1.09000 * 109.47023 * 209.99570 * 22 21 14 40 40 H 1.08996 * 109.47284 * 329.99769 * 22 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.5617 2.1053 -1.1955 5 6 2.2049 1.5066 -2.4198 6 1 2.9470 0.7290 -2.3144 7 6 1.8462 1.9518 -3.6745 8 7 0.9424 2.8985 -3.8029 9 14 2.6441 1.2102 -5.1920 10 1 3.6208 0.1704 -4.7797 11 1 1.5995 0.5950 -6.0498 12 1 3.3455 2.2751 -5.9530 13 6 1.6139 2.0868 1.2251 14 6 2.3016 1.4633 2.4124 15 6 1.6201 0.5650 3.2126 16 6 2.2505 -0.0073 4.3011 17 6 1.5078 -0.9869 5.1729 18 6 3.5638 0.3183 4.5897 19 35 4.4266 -0.4640 6.0795 20 6 4.2453 1.2161 3.7884 21 6 3.6151 1.7853 2.6976 22 6 4.3590 2.7602 1.8217 23 1 -0.3634 0.5040 -0.8955 24 1 -0.3633 -1.0276 0.0113 25 1 -0.3633 0.5235 0.8843 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 0.4779 2.0221 -1.2770 29 1 1.8405 3.1560 -1.1156 30 1 0.6898 3.2114 -4.6856 31 1 0.5338 2.0079 1.3482 32 1 1.8956 3.1372 1.1524 33 1 0.5951 0.3105 2.9869 34 1 1.6521 -1.9968 4.7890 35 1 1.8892 -0.9277 6.1923 36 1 0.4451 -0.7447 5.1679 37 1 5.2704 1.4709 4.0136 38 1 4.2193 3.7716 2.2035 39 1 5.4209 2.5142 1.8248 40 1 3.9751 2.7000 0.8034 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001238281371.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:18 Heat of formation + Delta-G solvation = 17.202562 kcal Electronic energy + Delta-G solvation = -20020.216429 eV Core-core repulsion = 17073.578949 eV Total energy + Delta-G solvation = -2946.637480 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 325.074 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.83924 -37.12470 -34.08493 -32.74877 -32.04797 -30.15611 -29.46061 -28.96668 -27.02628 -24.97225 -24.31491 -23.10618 -22.05563 -20.29343 -18.87977 -16.25895 -16.17645 -15.60181 -15.09902 -14.81058 -14.71630 -14.21403 -13.86619 -13.29618 -13.14148 -12.83821 -12.71612 -12.65285 -12.29297 -11.87204 -11.85579 -11.76291 -11.51158 -11.22946 -11.05384 -10.96509 -10.92710 -10.62869 -10.56225 -10.39864 -10.12706 -10.06359 -9.76506 -9.22227 -8.62911 -8.45654 -8.24369 -7.21913 -6.04784 -4.05621 1.21532 1.40568 1.65416 3.29354 3.37396 3.42134 3.65713 4.41826 4.74024 4.83088 4.97599 5.13663 5.24351 5.31223 5.34772 5.54523 5.57571 5.60378 5.72519 5.81797 5.82952 5.94803 5.97766 5.99245 6.10645 6.16534 6.16997 6.32857 6.42401 6.44630 6.60129 6.68738 6.84876 6.93230 7.00152 7.27103 7.41184 7.79128 8.06003 8.16315 8.51923 9.03082 9.58867 11.05805 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.025873 B = 0.003121 C = 0.003007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.947538 B = 8970.406527 C = 9308.314374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.061 3.939 3 N -0.525 5.525 4 C 0.187 3.813 5 C -0.503 4.503 6 H 0.063 0.937 7 C 0.056 3.944 8 N -0.899 5.899 9 Si 0.895 3.105 10 H -0.272 1.272 11 H -0.286 1.286 12 H -0.284 1.284 13 C 0.082 3.918 14 C -0.042 4.042 15 C -0.108 4.108 16 C -0.069 4.069 17 C -0.121 4.121 18 C -0.095 4.095 19 Br -0.065 7.065 20 C -0.093 4.093 21 C -0.059 4.059 22 C -0.122 4.122 23 H 0.070 0.930 24 H 0.046 0.954 25 H 0.043 0.957 26 H 0.080 0.920 27 H 0.052 0.948 28 H 0.004 0.996 29 H 0.025 0.975 30 H 0.260 0.740 31 H 0.038 0.962 32 H 0.079 0.921 33 H 0.126 0.874 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.068 0.932 37 H 0.127 0.873 38 H 0.064 0.936 39 H 0.061 0.939 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.630 -5.300 20.189 21.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.068 4.068 3 N -0.249 5.249 4 C 0.063 3.937 5 C -0.542 4.542 6 H 0.081 0.919 7 C -0.145 4.145 8 N -0.539 5.539 9 Si 0.723 3.277 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.211 1.211 13 C -0.046 4.046 14 C -0.043 4.043 15 C -0.127 4.127 16 C -0.070 4.070 17 C -0.177 4.177 18 C -0.174 4.174 19 Br 0.020 6.980 20 C -0.113 4.113 21 C -0.061 4.061 22 C -0.178 4.178 23 H 0.089 0.911 24 H 0.065 0.935 25 H 0.062 0.938 26 H 0.098 0.902 27 H 0.071 0.929 28 H 0.022 0.978 29 H 0.043 0.957 30 H 0.070 0.930 31 H 0.056 0.944 32 H 0.098 0.902 33 H 0.144 0.856 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.145 0.855 38 H 0.083 0.917 39 H 0.080 0.920 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 4.384 -5.490 20.581 21.747 hybrid contribution -0.742 -0.161 -1.216 1.434 sum 3.642 -5.651 19.365 20.498 Atomic orbital electron populations 1.22389 0.99441 1.00886 1.01991 1.21961 0.92044 0.91364 1.01397 1.62384 1.59167 1.01954 1.01400 1.19823 0.94686 0.93541 0.85688 1.21169 1.22417 1.20717 0.89868 0.91860 1.24967 0.95246 0.95243 0.99082 1.69961 1.31795 1.28764 1.23354 0.86489 0.79224 0.79114 0.82895 1.19663 1.21185 1.21057 1.21107 0.96456 0.98191 0.88860 1.20009 0.93636 0.95271 0.95391 1.20931 1.00179 0.97236 0.94402 1.19648 0.92493 0.98258 0.96650 1.20934 0.99882 0.97843 0.99072 1.21541 0.95584 1.03306 0.96993 1.96596 1.78827 1.82556 1.40014 1.20931 0.99772 0.96210 0.94364 1.19769 0.93699 0.97903 0.94713 1.20919 0.99333 0.96451 1.01131 0.91142 0.93494 0.93819 0.90164 0.92928 0.97801 0.95702 0.93024 0.94378 0.90245 0.85608 0.90792 0.90876 0.91300 0.85468 0.91705 0.91997 0.88308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.28 9.25 37.16 0.34 -2.93 16 2 C 0.06 1.14 5.63 -3.82 -0.02 1.12 16 3 N -0.53 -10.55 4.01 -237.51 -0.95 -11.50 16 4 C 0.19 4.58 4.50 -4.98 -0.02 4.56 16 5 C -0.50 -13.55 8.41 -34.44 -0.29 -13.84 16 6 H 0.06 1.72 7.33 -52.48 -0.38 1.33 16 7 C 0.06 1.53 5.46 -17.82 -0.10 1.44 16 8 N -0.90 -25.98 13.29 55.43 0.74 -25.24 16 9 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 10 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 11 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 13 C 0.08 1.39 4.03 -4.97 -0.02 1.37 16 14 C -0.04 -0.64 4.58 -104.62 -0.48 -1.12 16 15 C -0.11 -1.49 8.29 -39.59 -0.33 -1.82 16 16 C -0.07 -0.88 5.88 -104.60 -0.62 -1.50 16 17 C -0.12 -1.23 9.55 36.01 0.34 -0.89 16 18 C -0.10 -1.24 6.22 -39.52 -0.25 -1.49 16 19 Br -0.07 -0.73 31.79 -68.01 -2.16 -2.89 16 20 C -0.09 -1.25 9.44 -39.56 -0.37 -1.62 16 21 C -0.06 -0.87 5.88 -104.63 -0.62 -1.48 16 22 C -0.12 -1.70 9.26 36.01 0.33 -1.37 16 23 H 0.07 1.43 6.31 -51.93 -0.33 1.10 16 24 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.04 0.69 6.02 -51.93 -0.31 0.38 16 26 H 0.08 1.67 6.97 -51.93 -0.36 1.30 16 27 H 0.05 0.91 6.46 -51.93 -0.34 0.58 16 28 H 0.00 0.11 6.01 -51.93 -0.31 -0.20 16 29 H 0.02 0.65 7.92 -51.93 -0.41 0.24 16 30 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 31 H 0.04 0.64 5.96 -51.93 -0.31 0.33 16 32 H 0.08 1.35 7.08 -51.93 -0.37 0.98 16 33 H 0.13 1.60 7.74 -52.49 -0.41 1.19 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.07 0.71 6.65 -51.93 -0.35 0.36 16 36 H 0.07 0.62 8.08 -51.93 -0.42 0.20 16 37 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.06 0.78 8.09 -51.93 -0.42 0.36 16 40 H 0.10 1.65 6.33 -51.93 -0.33 1.32 16 LS Contribution 334.08 15.07 5.03 5.03 Total: -1.00 -27.92 334.08 -10.32 -38.24 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: -5.87 Total: -0.31 kcal Atomic # 6 Polarization: -17.48 SS G_CDS: -2.09 Total: -19.57 kcal Atomic # 7 Polarization: -36.52 SS G_CDS: -0.22 Total: -36.74 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 35 Polarization: -0.73 SS G_CDS: -2.16 Total: -2.89 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -27.92 -10.32 -38.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238281371.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.447 kcal (2) G-P(sol) polarization free energy of solvation -27.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.245 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds