Wall clock time and date at job start Tue Mar 31 2020 14:49:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46895 * 109.47108 * 2 1 4 4 C 1.46897 * 111.00369 * 299.33610 * 3 2 1 5 5 C 1.50697 * 109.46864 * 293.55440 * 4 3 2 6 6 H 1.08003 * 120.00089 * 354.96211 * 5 4 3 7 7 C 1.37881 * 119.99881 * 174.96821 * 5 4 3 8 8 N 1.31514 * 120.00151 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99763 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47318 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.46869 * 120.00107 * 9 7 5 12 12 H 1.48497 * 109.47215 * 239.99549 * 9 7 5 13 13 C 1.46905 * 110.99842 * 63.28502 * 3 2 1 14 14 C 1.50708 * 109.46872 * 66.04766 * 13 3 2 15 15 C 1.38267 * 119.98878 * 260.00045 * 14 13 3 16 16 C 1.38189 * 120.00848 * 179.97438 * 15 14 13 17 17 C 1.50707 * 120.00230 * 180.02562 * 16 15 14 18 18 C 1.38349 * 119.99113 * 359.97438 * 16 15 14 19 19 Br 1.89103 * 120.00922 * 179.97438 * 18 16 15 20 20 C 1.38299 * 119.98130 * 359.97438 * 18 16 15 21 21 C 1.38213 * 119.99136 * 79.72139 * 14 13 3 22 22 C 1.50702 * 119.99458 * 0.02562 * 21 14 13 23 23 H 1.08998 * 109.47301 * 60.62888 * 1 2 3 24 24 H 1.09002 * 109.47054 * 180.62799 * 1 2 3 25 25 H 1.08995 * 109.47144 * 300.62412 * 1 2 3 26 26 H 1.09006 * 109.46567 * 240.00315 * 2 1 3 27 27 H 1.08998 * 109.47141 * 120.00403 * 2 1 3 28 28 H 1.09005 * 109.47359 * 53.55116 * 4 3 2 29 29 H 1.08999 * 109.47027 * 173.55330 * 4 3 2 30 30 H 0.96998 * 120.00220 * 180.02562 * 8 7 5 31 31 H 1.08993 * 109.47393 * 306.05277 * 13 3 2 32 32 H 1.09003 * 109.47275 * 186.04218 * 13 3 2 33 33 H 1.08001 * 119.99427 * 359.97438 * 15 14 13 34 34 H 1.08996 * 109.46691 * 90.00308 * 17 16 15 35 35 H 1.09005 * 109.46655 * 210.00040 * 17 16 15 36 36 H 1.08992 * 109.47041 * 329.99973 * 17 16 15 37 37 H 1.07999 * 120.00536 * 179.97438 * 20 18 16 38 38 H 1.09001 * 109.46965 * 89.99734 * 22 21 14 39 39 H 1.09000 * 109.47023 * 209.99570 * 22 21 14 40 40 H 1.08996 * 109.47284 * 329.99769 * 22 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.5617 2.1053 -1.1955 5 6 2.2049 1.5066 -2.4198 6 1 2.9470 0.7290 -2.3144 7 6 1.8462 1.9518 -3.6745 8 7 0.9424 2.8985 -3.8029 9 14 2.6441 1.2102 -5.1920 10 1 3.6208 0.1704 -4.7797 11 1 1.5995 0.5950 -6.0498 12 1 3.3455 2.2751 -5.9530 13 6 1.6139 2.0868 1.2251 14 6 2.3016 1.4633 2.4124 15 6 1.6201 0.5650 3.2126 16 6 2.2505 -0.0073 4.3011 17 6 1.5078 -0.9869 5.1729 18 6 3.5638 0.3183 4.5897 19 35 4.4266 -0.4640 6.0795 20 6 4.2453 1.2161 3.7884 21 6 3.6151 1.7853 2.6976 22 6 4.3590 2.7602 1.8217 23 1 -0.3634 0.5040 -0.8955 24 1 -0.3633 -1.0276 0.0113 25 1 -0.3633 0.5235 0.8843 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 0.4779 2.0221 -1.2770 29 1 1.8405 3.1560 -1.1156 30 1 0.6898 3.2114 -4.6856 31 1 0.5338 2.0079 1.3482 32 1 1.8956 3.1372 1.1524 33 1 0.5951 0.3105 2.9869 34 1 1.6521 -1.9968 4.7890 35 1 1.8892 -0.9277 6.1923 36 1 0.4451 -0.7447 5.1679 37 1 5.2704 1.4709 4.0136 38 1 4.2193 3.7716 2.2035 39 1 5.4209 2.5142 1.8248 40 1 3.9751 2.7000 0.8034 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001238281371.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:17 Heat of formation + Delta-G solvation = 3.609812 kcal Electronic energy + Delta-G solvation = -20020.805855 eV Core-core repulsion = 17073.578949 eV Total energy + Delta-G solvation = -2947.226906 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 325.074 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.96892 -38.63109 -35.24154 -34.63348 -33.22250 -31.36868 -30.87933 -30.07162 -28.70384 -26.31610 -25.48306 -24.89982 -23.18932 -21.70664 -20.22125 -18.33323 -17.37014 -16.86162 -16.62025 -16.35683 -15.86247 -15.80089 -14.98105 -14.75289 -14.43091 -14.02967 -14.01907 -13.71959 -13.64594 -13.41614 -13.11998 -12.84865 -12.80610 -12.75306 -12.66846 -12.57094 -12.46846 -12.09584 -12.01246 -11.70517 -11.56173 -11.41855 -11.20320 -11.02383 -10.57589 -9.67725 -9.31367 -8.86990 -8.16516 -6.24837 0.13358 0.36265 0.66982 1.40734 1.42455 1.54882 2.41395 2.57504 3.16569 3.48021 3.77844 3.84610 3.89239 4.17786 4.25265 4.31169 4.42849 4.52211 4.59142 4.65883 4.68886 4.73173 4.79294 4.83665 4.90651 4.97558 5.00562 5.04879 5.19013 5.22524 5.29022 5.38770 5.41900 5.48133 5.53385 5.69863 5.75932 5.92374 6.11763 6.39372 6.68174 6.92273 7.44406 8.93862 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.025873 B = 0.003121 C = 0.003007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.947538 B = 8970.406527 C = 9308.314374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.064 3.936 3 N -0.529 5.529 4 C 0.204 3.796 5 C -0.513 4.513 6 H 0.058 0.942 7 C 0.005 3.995 8 N -0.933 5.933 9 Si 0.961 3.039 10 H -0.266 1.266 11 H -0.281 1.281 12 H -0.280 1.280 13 C 0.088 3.912 14 C -0.057 4.057 15 C -0.110 4.110 16 C -0.069 4.069 17 C -0.120 4.120 18 C -0.103 4.103 19 Br -0.045 7.045 20 C -0.094 4.094 21 C -0.072 4.072 22 C -0.117 4.117 23 H 0.034 0.966 24 H 0.070 0.930 25 H 0.059 0.941 26 H 0.056 0.944 27 H 0.073 0.927 28 H -0.018 1.018 29 H 0.000 1.000 30 H 0.262 0.738 31 H 0.041 0.959 32 H 0.071 0.929 33 H 0.137 0.863 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.142 0.858 38 H 0.076 0.924 39 H 0.074 0.926 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.185 -6.786 21.720 23.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.064 4.064 3 N -0.253 5.253 4 C 0.078 3.922 5 C -0.552 4.552 6 H 0.076 0.924 7 C -0.193 4.193 8 N -0.574 5.574 9 Si 0.786 3.214 10 H -0.190 1.190 11 H -0.206 1.206 12 H -0.206 1.206 13 C -0.039 4.039 14 C -0.058 4.058 15 C -0.130 4.130 16 C -0.071 4.071 17 C -0.176 4.176 18 C -0.182 4.182 19 Br 0.040 6.960 20 C -0.114 4.114 21 C -0.073 4.073 22 C -0.174 4.174 23 H 0.053 0.947 24 H 0.089 0.911 25 H 0.078 0.922 26 H 0.074 0.926 27 H 0.091 0.909 28 H 0.000 1.000 29 H 0.018 0.982 30 H 0.071 0.929 31 H 0.059 0.941 32 H 0.090 0.910 33 H 0.154 0.846 34 H 0.100 0.900 35 H 0.097 0.903 36 H 0.101 0.899 37 H 0.160 0.840 38 H 0.095 0.905 39 H 0.093 0.907 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 4.945 -6.987 22.134 23.732 hybrid contribution -0.885 0.282 -1.558 1.814 sum 4.060 -6.706 20.576 22.019 Atomic orbital electron populations 1.22263 0.98237 1.02184 1.00960 1.21919 0.93007 0.90355 1.01116 1.62242 1.59421 1.02467 1.01127 1.19437 0.93043 0.92476 0.87209 1.21437 1.22207 1.20444 0.91087 0.92393 1.25783 0.95749 0.95610 1.02138 1.70075 1.33145 1.30077 1.24134 0.85462 0.78395 0.78424 0.79115 1.18994 1.20645 1.20583 1.21027 0.96827 0.97770 0.88289 1.19845 0.94146 0.96614 0.95232 1.21045 1.00646 0.96792 0.94476 1.19945 0.92567 0.98161 0.96418 1.20991 1.00446 0.97429 0.98747 1.21783 0.95925 1.03006 0.97477 1.96616 1.78459 1.82142 1.38750 1.21081 1.00448 0.95982 0.93894 1.19857 0.93679 0.98373 0.95424 1.20840 0.99897 0.97350 0.99275 0.94668 0.91058 0.92173 0.92554 0.90895 0.99984 0.98219 0.92869 0.94081 0.91034 0.84551 0.89978 0.90312 0.89911 0.84004 0.90495 0.90720 0.91466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.10 9.25 71.98 0.67 -5.43 16 2 C 0.06 2.40 5.63 86.31 0.49 2.89 16 3 N -0.53 -21.73 4.01 -905.35 -3.63 -25.36 16 4 C 0.20 10.43 4.50 85.56 0.38 10.81 16 5 C -0.51 -28.41 8.41 25.60 0.22 -28.19 16 6 H 0.06 3.21 7.33 -2.91 -0.02 3.19 16 7 C 0.01 0.28 5.46 84.66 0.46 0.74 16 8 N -0.93 -55.24 13.29 21.45 0.28 -54.95 16 9 Si 0.96 44.04 29.54 68.60 2.03 46.07 16 10 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 11 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 12 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 13 C 0.09 3.04 4.03 85.56 0.34 3.38 16 14 C -0.06 -1.70 4.58 -19.86 -0.09 -1.79 16 15 C -0.11 -2.82 8.29 22.26 0.18 -2.64 16 16 C -0.07 -1.60 5.88 -19.85 -0.12 -1.71 16 17 C -0.12 -2.07 9.55 71.24 0.68 -1.39 16 18 C -0.10 -2.44 6.22 22.31 0.14 -2.30 16 19 Br -0.05 -0.90 31.79 -20.37 -0.65 -1.54 16 20 C -0.09 -2.36 9.44 22.29 0.21 -2.15 16 21 C -0.07 -2.03 5.88 -19.87 -0.12 -2.15 16 22 C -0.12 -3.25 9.26 71.24 0.66 -2.59 16 23 H 0.03 1.45 6.31 -2.39 -0.02 1.44 16 24 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 25 H 0.06 1.84 6.02 -2.39 -0.01 1.83 16 26 H 0.06 2.37 6.97 -2.38 -0.02 2.35 16 27 H 0.07 2.44 6.46 -2.39 -0.02 2.43 16 28 H -0.02 -0.96 6.01 -2.38 -0.01 -0.97 16 29 H 0.00 -0.01 7.92 -2.39 -0.02 -0.03 16 30 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 31 H 0.04 1.37 5.96 -2.39 -0.01 1.36 16 32 H 0.07 2.53 7.08 -2.39 -0.02 2.51 16 33 H 0.14 3.13 7.74 -2.91 -0.02 3.11 16 34 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.08 1.28 6.65 -2.38 -0.02 1.27 16 36 H 0.08 1.22 8.08 -2.39 -0.02 1.20 16 37 H 0.14 3.04 8.06 -2.91 -0.02 3.01 16 38 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 39 H 0.07 1.83 8.09 -2.39 -0.02 1.81 16 40 H 0.07 2.31 6.33 -2.39 -0.02 2.30 16 Total: -1.00 -60.43 334.08 3.17 -57.25 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: 1.03 Total: 11.06 kcal Atomic # 6 Polarization: -36.63 SS G_CDS: 4.11 Total: -32.52 kcal Atomic # 7 Polarization: -76.97 SS G_CDS: -3.35 Total: -80.32 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Atomic # 35 Polarization: -0.90 SS G_CDS: -0.65 Total: -1.54 kcal Total: -60.43 3.17 -57.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238281371.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.864 kcal (2) G-P(sol) polarization free energy of solvation -60.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.254 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds