Wall clock time and date at job start Tue Mar 31 2020 13:58:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31567 * 1 3 3 Si 1.86797 * 119.99945 * 2 1 4 4 H 1.48503 * 109.47102 * 90.00172 * 3 2 1 5 5 H 1.48502 * 109.47196 * 209.99712 * 3 2 1 6 6 H 1.48493 * 109.47475 * 330.00163 * 3 2 1 7 7 C 1.38640 * 119.99612 * 179.72205 * 2 1 3 8 8 H 1.07994 * 120.00495 * 0.02562 * 7 2 1 9 9 O 1.34811 * 119.99640 * 180.02562 * 7 2 1 10 10 C 1.35725 * 116.99946 * 174.92566 * 9 7 2 11 11 C 1.39444 * 120.38044 * 5.18410 * 10 9 7 12 12 C 1.38193 * 118.46094 * 179.80315 * 11 10 9 13 13 C 1.39475 * 119.14395 * 0.44977 * 12 11 10 14 14 C 1.48223 * 119.65435 * 179.76970 * 13 12 11 15 15 C 1.39281 * 120.46302 * 359.74263 * 14 13 12 16 16 N 1.31755 * 120.67666 * 179.77200 * 15 14 13 17 17 C 1.32490 * 121.75313 * 0.49828 * 16 15 14 18 18 N 1.38861 * 119.56974 * 179.74924 * 17 16 15 19 19 C 1.39231 * 120.86720 * 359.76167 * 17 16 15 20 20 C 1.38066 * 119.22587 * 359.97438 * 19 17 16 21 21 C 1.50698 * 120.80001 * 180.02562 * 20 19 17 22 22 F 1.39906 * 109.47047 * 359.97438 * 21 20 19 23 23 F 1.39899 * 109.46754 * 119.97809 * 21 20 19 24 24 F 1.39900 * 109.47239 * 239.97651 * 21 20 19 25 25 N 1.32704 * 120.68572 * 359.78846 * 13 12 11 26 26 C 1.31686 * 121.67872 * 359.97438 * 25 13 12 27 27 H 0.97005 * 119.99742 * 359.97438 * 1 2 3 28 28 H 1.08001 * 120.77113 * 359.97438 * 11 10 9 29 29 H 1.07998 * 120.42673 * 180.22185 * 12 11 10 30 30 H 1.08003 * 119.65935 * 0.02562 * 15 14 13 31 31 H 0.96993 * 120.00145 * 180.02562 * 18 17 16 32 32 H 0.96997 * 119.99667 * 0.02562 * 18 17 16 33 33 H 1.07993 * 120.38918 * 179.97438 * 19 17 16 34 34 H 1.08003 * 119.60365 * 179.97438 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4972 2.0464 1.4001 5 1 3.5472 1.4402 -0.7000 6 1 1.4472 2.6527 -0.7000 7 6 2.0088 -1.2007 0.0058 8 1 1.4688 -2.1360 0.0099 9 8 3.3569 -1.2007 0.0063 10 6 3.9730 -2.4048 0.1191 11 6 3.2257 -3.5820 0.1197 12 6 3.8941 -4.7863 0.2325 13 6 5.2838 -4.7834 0.3509 14 6 6.0117 -6.0683 0.4777 15 6 5.3172 -7.2756 0.4848 16 7 5.9604 -8.4204 0.5929 17 6 7.2793 -8.4711 0.7079 18 7 7.9102 -9.7026 0.8243 19 6 8.0411 -7.3057 0.7140 20 6 7.4066 -6.0850 0.5976 21 6 8.1964 -4.8015 0.5995 22 9 9.5585 -5.0924 0.7311 23 9 7.9792 -4.1186 -0.6020 24 9 7.7846 -4.0021 1.6713 25 7 5.9610 -3.6422 0.3514 26 6 5.3550 -2.4783 0.2409 27 1 -0.4850 0.8401 0.0004 28 1 2.1497 -3.5535 0.0312 29 1 3.3471 -5.7175 0.2328 30 1 4.2408 -7.2735 0.3967 31 1 8.8754 -9.7469 0.9092 32 1 7.3857 -10.5185 0.8206 33 1 9.1157 -7.3559 0.8086 34 1 5.9392 -1.5699 0.2457 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241679767.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:58:19 Heat of formation + Delta-G solvation = -70.623888 kcal Electronic energy + Delta-G solvation = -27137.116103 eV Core-core repulsion = 22622.300540 eV Total energy + Delta-G solvation = -4514.815563 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.078 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.68037 -47.27705 -46.96598 -40.57094 -39.59521 -37.53795 -35.08835 -33.27233 -32.66254 -31.70170 -30.89098 -28.07932 -26.56276 -25.48763 -23.91736 -23.00060 -22.02197 -21.25082 -18.62272 -18.55199 -17.98643 -17.95357 -17.62835 -17.12650 -16.50282 -16.08264 -15.48739 -14.84810 -14.80264 -14.70322 -14.30835 -14.22780 -14.06475 -13.95558 -13.87198 -13.57574 -13.37804 -13.19029 -12.92673 -12.73168 -12.59823 -12.53559 -12.03464 -11.89021 -11.53242 -11.16200 -10.91476 -10.43211 -10.14492 -9.85585 -9.75896 -9.20467 -9.08440 -8.94814 -8.43475 -7.25792 -6.65221 -4.28927 0.71746 0.90958 1.88356 2.18125 2.91808 3.11142 3.15502 3.26707 3.28850 3.61980 3.99291 4.06448 4.31627 4.39940 4.47049 4.68578 4.69824 4.79307 4.86896 4.90370 5.01975 5.27012 5.36863 5.50611 5.67012 5.70441 5.83705 6.04099 6.24861 6.36853 6.71014 6.85116 6.96480 7.11504 7.18815 7.51042 7.74930 7.97796 8.50153 8.67673 9.24945 10.40713 Molecular weight = 325.08amu Principal moments of inertia in cm(-1) A = 0.022248 B = 0.003488 C = 0.003075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.235742 B = 8024.777646 C = 9104.477313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.067 3.933 3 Si 0.907 3.093 4 H -0.270 1.270 5 H -0.256 1.256 6 H -0.279 1.279 7 C -0.391 4.391 8 H 0.110 0.890 9 O -0.195 6.195 10 C 0.117 3.883 11 C -0.187 4.187 12 C -0.095 4.095 13 C 0.042 3.958 14 C -0.065 4.065 15 C 0.154 3.846 16 N -0.520 5.520 17 C 0.390 3.610 18 N -0.850 5.850 19 C -0.193 4.193 20 C -0.084 4.084 21 C 0.527 3.473 22 F -0.194 7.194 23 F -0.159 7.159 24 F -0.159 7.159 25 N -0.432 5.432 26 C 0.046 3.954 27 H 0.284 0.716 28 H 0.146 0.854 29 H 0.125 0.875 30 H 0.170 0.830 31 H 0.408 0.592 32 H 0.405 0.595 33 H 0.143 0.857 34 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.186 -14.710 1.380 20.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.139 4.139 3 Si 0.732 3.268 4 H -0.195 1.195 5 H -0.180 1.180 6 H -0.205 1.205 7 C -0.466 4.466 8 H 0.127 0.873 9 O -0.096 6.096 10 C 0.060 3.940 11 C -0.213 4.213 12 C -0.115 4.115 13 C -0.093 4.093 14 C -0.071 4.071 15 C -0.006 4.006 16 N -0.236 5.236 17 C 0.153 3.847 18 N -0.395 5.395 19 C -0.218 4.218 20 C -0.094 4.094 21 C 0.473 3.527 22 F -0.175 7.175 23 F -0.140 7.140 24 F -0.140 7.140 25 N -0.141 5.141 26 C -0.118 4.118 27 H 0.094 0.906 28 H 0.163 0.837 29 H 0.143 0.857 30 H 0.186 0.814 31 H 0.238 0.762 32 H 0.234 0.766 33 H 0.161 0.839 34 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 14.459 -15.060 1.423 20.926 hybrid contribution -0.140 1.296 -0.051 1.304 sum 14.319 -13.764 1.372 19.909 Atomic orbital electron populations 1.69642 1.05714 1.29122 1.45529 1.24532 0.95094 0.99202 0.95023 0.86147 0.80451 0.80918 0.79328 1.19526 1.17994 1.20481 1.20838 0.76560 0.96935 1.52281 0.87316 1.83559 1.22968 1.25433 1.77688 1.20274 0.93114 0.86104 0.94494 1.21557 1.01645 0.91378 1.06737 1.21619 0.93532 0.98171 0.98179 1.18776 0.90293 0.90147 1.10036 1.18957 0.91187 0.93763 1.03166 1.22551 1.00030 0.84937 0.93045 1.67156 1.07783 1.30052 1.18647 1.18159 0.88418 0.86254 0.91838 1.42072 1.09800 1.04676 1.82913 1.21043 1.01260 0.90583 1.08884 1.20182 0.94111 0.92699 1.02411 1.17604 0.75649 0.84181 0.75294 1.93115 1.34988 1.93547 1.95882 1.93221 1.94200 1.81190 1.45425 1.93223 1.89788 1.75262 1.55721 1.67539 1.39142 0.97673 1.09765 1.21646 0.89352 0.95352 1.05442 0.90562 0.83669 0.85678 0.81351 0.76211 0.76562 0.83919 0.82934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.49 13.96 55.48 0.77 -22.71 16 2 C 0.07 1.77 5.49 -17.52 -0.10 1.67 16 3 Si 0.91 20.37 28.62 -169.99 -4.86 15.50 16 4 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 5 H -0.26 -5.76 7.11 56.52 0.40 -5.36 16 6 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 7 C -0.39 -10.24 9.95 30.88 0.31 -9.93 16 8 H 0.11 2.88 5.48 -52.49 -0.29 2.59 16 9 O -0.20 -4.77 8.59 0.18 0.00 -4.77 16 10 C 0.12 2.53 6.67 -38.88 -0.26 2.27 16 11 C -0.19 -3.70 9.25 -39.15 -0.36 -4.06 16 12 C -0.10 -1.60 9.46 -39.14 -0.37 -1.97 16 13 C 0.04 0.74 6.58 -82.93 -0.55 0.19 16 14 C -0.07 -0.99 5.87 -104.74 -0.61 -1.61 16 15 C 0.15 2.02 10.58 -17.20 -0.18 1.84 16 16 N -0.52 -6.61 10.38 -12.16 -0.13 -6.73 16 17 C 0.39 4.38 7.74 -155.04 -1.20 3.18 16 18 N -0.85 -6.06 9.07 31.13 0.28 -5.78 16 19 C -0.19 -2.27 9.31 -39.28 -0.37 -2.63 16 20 C -0.08 -1.23 5.42 -104.02 -0.56 -1.79 16 21 C 0.53 8.21 2.78 36.00 0.10 8.31 16 22 F -0.19 -2.67 16.07 2.25 0.04 -2.63 16 23 F -0.16 -2.74 14.88 2.25 0.03 -2.70 16 24 F -0.16 -2.74 14.87 2.25 0.03 -2.70 16 25 N -0.43 -8.22 4.13 -9.62 -0.04 -8.26 16 26 C 0.05 0.92 11.14 -17.36 -0.19 0.72 16 27 H 0.28 7.11 8.31 -40.82 -0.34 6.77 16 28 H 0.15 2.91 5.75 -52.49 -0.30 2.61 16 29 H 0.13 1.64 6.20 -52.49 -0.33 1.31 16 30 H 0.17 1.82 6.18 -52.48 -0.32 1.49 16 31 H 0.41 1.82 8.82 -40.82 -0.36 1.46 16 32 H 0.40 2.43 8.95 -40.82 -0.37 2.06 16 33 H 0.14 1.34 7.25 -52.49 -0.38 0.96 16 34 H 0.15 2.79 8.06 -52.48 -0.42 2.37 16 LS Contribution 307.13 15.07 4.63 4.63 Total: -1.00 -29.46 307.13 -5.49 -34.95 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -1.90 Total: 5.02 kcal Atomic # 6 Polarization: 0.53 SS G_CDS: -4.35 Total: -3.81 kcal Atomic # 7 Polarization: -44.38 SS G_CDS: 0.89 Total: -43.48 kcal Atomic # 8 Polarization: -4.77 SS G_CDS: 0.00 Total: -4.77 kcal Atomic # 9 Polarization: -8.14 SS G_CDS: 0.10 Total: -8.03 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -4.86 Total: 15.50 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -29.46 -5.49 -34.95 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241679767.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.673 kcal (2) G-P(sol) polarization free energy of solvation -29.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds