Wall clock time and date at job start Tue Mar 31 2020 13:58:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31567 * 1 3 3 Si 1.86797 * 119.99945 * 2 1 4 4 H 1.48503 * 109.47102 * 90.00172 * 3 2 1 5 5 H 1.48502 * 109.47196 * 209.99712 * 3 2 1 6 6 H 1.48493 * 109.47475 * 330.00163 * 3 2 1 7 7 C 1.38640 * 119.99612 * 179.72205 * 2 1 3 8 8 H 1.07994 * 120.00495 * 0.02562 * 7 2 1 9 9 O 1.34811 * 119.99640 * 180.02562 * 7 2 1 10 10 C 1.35725 * 116.99946 * 174.92566 * 9 7 2 11 11 C 1.39444 * 120.38044 * 5.18410 * 10 9 7 12 12 C 1.38193 * 118.46094 * 179.80315 * 11 10 9 13 13 C 1.39475 * 119.14395 * 0.44977 * 12 11 10 14 14 C 1.48223 * 119.65435 * 179.76970 * 13 12 11 15 15 C 1.39281 * 120.46302 * 359.74263 * 14 13 12 16 16 N 1.31755 * 120.67666 * 179.77200 * 15 14 13 17 17 C 1.32490 * 121.75313 * 0.49828 * 16 15 14 18 18 N 1.38861 * 119.56974 * 179.74924 * 17 16 15 19 19 C 1.39231 * 120.86720 * 359.76167 * 17 16 15 20 20 C 1.38066 * 119.22587 * 359.97438 * 19 17 16 21 21 C 1.50698 * 120.80001 * 180.02562 * 20 19 17 22 22 F 1.39906 * 109.47047 * 359.97438 * 21 20 19 23 23 F 1.39899 * 109.46754 * 119.97809 * 21 20 19 24 24 F 1.39900 * 109.47239 * 239.97651 * 21 20 19 25 25 N 1.32704 * 120.68572 * 359.78846 * 13 12 11 26 26 C 1.31686 * 121.67872 * 359.97438 * 25 13 12 27 27 H 0.97005 * 119.99742 * 359.97438 * 1 2 3 28 28 H 1.08001 * 120.77113 * 359.97438 * 11 10 9 29 29 H 1.07998 * 120.42673 * 180.22185 * 12 11 10 30 30 H 1.08003 * 119.65935 * 0.02562 * 15 14 13 31 31 H 0.96993 * 120.00145 * 180.02562 * 18 17 16 32 32 H 0.96997 * 119.99667 * 0.02562 * 18 17 16 33 33 H 1.07993 * 120.38918 * 179.97438 * 19 17 16 34 34 H 1.08003 * 119.60365 * 179.97438 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4972 2.0464 1.4001 5 1 3.5472 1.4402 -0.7000 6 1 1.4472 2.6527 -0.7000 7 6 2.0088 -1.2007 0.0058 8 1 1.4688 -2.1360 0.0099 9 8 3.3569 -1.2007 0.0063 10 6 3.9730 -2.4048 0.1191 11 6 3.2257 -3.5820 0.1197 12 6 3.8941 -4.7863 0.2325 13 6 5.2838 -4.7834 0.3509 14 6 6.0117 -6.0683 0.4777 15 6 5.3172 -7.2756 0.4848 16 7 5.9604 -8.4204 0.5929 17 6 7.2793 -8.4711 0.7079 18 7 7.9102 -9.7026 0.8243 19 6 8.0411 -7.3057 0.7140 20 6 7.4066 -6.0850 0.5976 21 6 8.1964 -4.8015 0.5995 22 9 9.5585 -5.0924 0.7311 23 9 7.9792 -4.1186 -0.6020 24 9 7.7846 -4.0021 1.6713 25 7 5.9610 -3.6422 0.3514 26 6 5.3550 -2.4783 0.2409 27 1 -0.4850 0.8401 0.0004 28 1 2.1497 -3.5535 0.0312 29 1 3.3471 -5.7175 0.2328 30 1 4.2408 -7.2735 0.3967 31 1 8.8754 -9.7469 0.9092 32 1 7.3857 -10.5185 0.8206 33 1 9.1157 -7.3559 0.8086 34 1 5.9392 -1.5699 0.2457 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241679767.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:58:19 Heat of formation + Delta-G solvation = -88.871562 kcal Electronic energy + Delta-G solvation = -27137.907382 eV Core-core repulsion = 22622.300540 eV Total energy + Delta-G solvation = -4515.606842 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.078 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -50.91307 -48.48787 -48.27068 -41.76042 -41.00536 -39.12563 -36.04151 -34.55689 -34.28544 -33.14726 -32.21227 -29.38820 -27.75482 -27.14369 -25.16015 -24.43637 -23.25974 -22.58592 -20.13357 -19.75353 -19.32541 -19.21080 -19.15953 -18.16843 -17.82071 -17.25930 -16.82401 -16.32374 -16.11676 -15.80534 -15.59015 -15.55802 -15.37254 -15.14203 -15.12745 -14.87085 -14.68133 -14.60484 -14.50219 -14.39574 -14.01811 -13.98962 -13.53431 -13.07661 -12.95336 -12.80959 -12.13651 -12.01883 -11.70137 -11.15887 -11.00247 -10.76811 -10.60196 -10.45632 -9.71708 -8.55299 -8.51843 -6.26352 -0.46415 -0.09540 0.34943 0.78719 1.33691 1.36951 1.52921 1.75584 2.25919 2.45190 2.52322 2.78742 2.83336 2.88400 3.14397 3.23401 3.31521 3.61973 3.62913 3.73525 3.92665 4.01174 4.11406 4.22760 4.35928 4.49847 4.57627 4.79737 4.97323 5.08016 5.28106 5.34475 5.51418 5.67672 5.95488 6.23995 6.43118 6.77689 6.97175 7.17564 7.45454 8.54988 Molecular weight = 325.08amu Principal moments of inertia in cm(-1) A = 0.022248 B = 0.003488 C = 0.003075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.235742 B = 8024.777646 C = 9104.477313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.018 3.982 3 Si 0.965 3.035 4 H -0.266 1.266 5 H -0.260 1.260 6 H -0.268 1.268 7 C -0.402 4.402 8 H 0.091 0.909 9 O -0.225 6.225 10 C 0.088 3.912 11 C -0.187 4.187 12 C -0.093 4.093 13 C 0.067 3.933 14 C -0.107 4.107 15 C 0.172 3.828 16 N -0.533 5.533 17 C 0.403 3.597 18 N -0.826 5.826 19 C -0.190 4.190 20 C -0.087 4.087 21 C 0.523 3.477 22 F -0.183 7.183 23 F -0.172 7.172 24 F -0.172 7.172 25 N -0.442 5.442 26 C 0.044 3.956 27 H 0.287 0.713 28 H 0.137 0.863 29 H 0.169 0.831 30 H 0.191 0.809 31 H 0.424 0.576 32 H 0.415 0.585 33 H 0.169 0.831 34 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.703 -18.037 1.709 24.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.182 4.182 3 Si 0.787 3.213 4 H -0.191 1.191 5 H -0.185 1.185 6 H -0.193 1.193 7 C -0.478 4.478 8 H 0.108 0.892 9 O -0.130 6.130 10 C 0.035 3.965 11 C -0.213 4.213 12 C -0.113 4.113 13 C -0.069 4.069 14 C -0.113 4.113 15 C 0.012 3.988 16 N -0.250 5.250 17 C 0.164 3.836 18 N -0.370 5.370 19 C -0.215 4.215 20 C -0.096 4.096 21 C 0.469 3.531 22 F -0.164 7.164 23 F -0.154 7.154 24 F -0.153 7.153 25 N -0.152 5.152 26 C -0.118 4.118 27 H 0.097 0.903 28 H 0.155 0.845 29 H 0.186 0.814 30 H 0.208 0.792 31 H 0.257 0.743 32 H 0.246 0.754 33 H 0.186 0.814 34 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 17.057 -18.449 1.759 25.187 hybrid contribution -0.490 1.673 -0.093 1.746 sum 16.566 -16.776 1.666 23.636 Atomic orbital electron populations 1.69712 1.06850 1.29887 1.48705 1.25226 0.95804 1.02076 0.95117 0.85292 0.79021 0.77607 0.79380 1.19094 1.18460 1.19255 1.20760 0.77608 0.96514 1.52923 0.89194 1.83527 1.21725 1.26582 1.81130 1.20654 0.93943 0.86196 0.95712 1.21703 1.01453 0.92120 1.06005 1.21989 0.93514 0.98741 0.97011 1.19404 0.90906 0.90871 1.05701 1.18894 0.91641 0.93128 1.07630 1.22845 1.00989 0.84168 0.90777 1.67297 1.08422 1.29528 1.19790 1.18443 0.88185 0.87394 0.89611 1.42144 1.10914 1.03701 1.80263 1.21282 1.02585 0.89618 1.08017 1.20233 0.93938 0.92975 1.02497 1.17812 0.76352 0.84491 0.74475 1.93130 1.34115 1.93396 1.95765 1.93193 1.94354 1.81640 1.46166 1.93195 1.90022 1.75833 1.56292 1.67668 1.39215 0.97834 1.10477 1.21835 0.88791 0.96278 1.04852 0.90312 0.84506 0.81378 0.79228 0.74298 0.75377 0.81358 0.82081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.96 13.96 21.61 0.30 -51.65 16 2 C 0.02 0.99 5.49 84.83 0.47 1.46 16 3 Si 0.96 43.49 28.62 68.60 1.96 45.45 16 4 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 5 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 6 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 7 C -0.40 -22.22 9.95 67.92 0.68 -21.54 16 8 H 0.09 5.10 5.48 -2.91 -0.02 5.08 16 9 O -0.22 -11.52 8.59 -22.27 -0.19 -11.72 16 10 C 0.09 3.93 6.67 22.73 0.15 4.08 16 11 C -0.19 -7.48 9.25 22.55 0.21 -7.27 16 12 C -0.09 -2.99 9.46 22.56 0.21 -2.77 16 13 C 0.07 2.26 6.58 41.97 0.28 2.53 16 14 C -0.11 -2.96 5.87 -19.94 -0.12 -3.08 16 15 C 0.17 3.85 10.58 84.96 0.90 4.75 16 16 N -0.53 -11.25 10.38 -192.38 -2.00 -13.24 16 17 C 0.40 7.18 7.74 133.11 1.03 8.21 16 18 N -0.83 -7.54 9.07 -55.41 -0.50 -8.04 16 19 C -0.19 -3.69 9.31 22.47 0.21 -3.48 16 20 C -0.09 -2.28 5.42 -19.48 -0.11 -2.39 16 21 C 0.52 15.36 2.78 71.24 0.20 15.56 16 22 F -0.18 -4.59 16.07 44.97 0.72 -3.86 16 23 F -0.17 -5.74 14.88 44.97 0.67 -5.08 16 24 F -0.17 -5.76 14.87 44.97 0.67 -5.09 16 25 N -0.44 -16.59 4.13 -184.34 -0.76 -17.35 16 26 C 0.04 1.76 11.14 84.88 0.95 2.71 16 27 H 0.29 15.02 8.31 -92.70 -0.77 14.25 16 28 H 0.14 5.72 5.75 -2.91 -0.02 5.71 16 29 H 0.17 3.84 6.20 -2.91 -0.02 3.82 16 30 H 0.19 3.26 6.18 -2.91 -0.02 3.24 16 31 H 0.42 1.51 8.82 -92.71 -0.82 0.69 16 32 H 0.42 2.88 8.95 -92.71 -0.83 2.05 16 33 H 0.17 2.34 7.25 -2.91 -0.02 2.32 16 34 H 0.16 6.04 8.06 -2.91 -0.02 6.02 16 Total: -1.00 -66.74 307.13 5.51 -61.22 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -0.41 Total: 10.58 kcal Atomic # 6 Polarization: -6.28 SS G_CDS: 5.05 Total: -1.22 kcal Atomic # 7 Polarization: -87.33 SS G_CDS: -2.96 Total: -90.29 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: -0.19 Total: -11.72 kcal Atomic # 9 Polarization: -16.09 SS G_CDS: 2.06 Total: -14.02 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 1.96 Total: 45.45 kcal Total: -66.74 5.51 -61.22 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241679767.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.647 kcal (2) G-P(sol) polarization free energy of solvation -66.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds