Wall clock time and date at job start Tue Mar 31 2020 14:20:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47166 * 2 1 4 4 H 1.09000 * 109.47004 * 54.78026 * 3 2 1 5 5 C 1.50693 * 109.47135 * 174.78104 * 3 2 1 6 6 H 1.08009 * 120.00033 * 119.99866 * 5 3 2 7 7 C 1.37874 * 120.00188 * 299.99891 * 5 3 2 8 8 N 1.31523 * 120.00036 * 179.97438 * 7 5 3 9 9 Si 1.86796 * 120.00085 * 0.02562 * 7 5 3 10 10 H 1.48502 * 109.47379 * 89.99704 * 9 7 5 11 11 H 1.48496 * 109.47276 * 210.00198 * 9 7 5 12 12 H 1.48505 * 109.46820 * 329.99699 * 9 7 5 13 13 N 1.46903 * 109.47017 * 294.78138 * 3 2 1 14 14 C 1.46899 * 110.99970 * 154.13671 * 13 3 2 15 15 C 1.53002 * 109.47160 * 185.50164 * 14 13 3 16 16 C 1.52999 * 109.47022 * 180.02562 * 15 14 13 17 17 C 1.50692 * 109.47071 * 179.97438 * 16 15 14 18 18 C 1.38241 * 119.99340 * 269.72368 * 17 16 15 19 19 C 1.38221 * 120.01316 * 179.76878 * 18 17 16 20 20 C 1.38324 * 119.98861 * 0.50545 * 19 18 17 21 21 Br 1.89098 * 120.01199 * 179.72730 * 20 19 18 22 22 C 1.38327 * 119.98028 * 359.75117 * 20 19 18 23 23 C 1.38223 * 119.98798 * 359.97438 * 22 20 19 24 24 H 1.09002 * 109.47103 * 177.23346 * 1 2 3 25 25 H 1.09002 * 109.46949 * 297.22533 * 1 2 3 26 26 H 1.08996 * 109.47182 * 57.23197 * 1 2 3 27 27 H 1.08994 * 109.47046 * 239.99774 * 2 1 3 28 28 H 1.09006 * 109.47122 * 120.00224 * 2 1 3 29 29 H 0.96999 * 119.99288 * 180.02562 * 8 7 5 30 30 H 1.00896 * 110.99954 * 278.09556 * 13 3 2 31 31 H 1.08998 * 109.47257 * 305.50155 * 14 13 3 32 32 H 1.08998 * 109.47077 * 65.49548 * 14 13 3 33 33 H 1.08998 * 109.46839 * 299.99612 * 15 14 13 34 34 H 1.08999 * 109.47146 * 59.99928 * 15 14 13 35 35 H 1.08998 * 109.47201 * 299.99873 * 16 15 14 36 36 H 1.08999 * 109.47343 * 59.99896 * 16 15 14 37 37 H 1.07997 * 119.99190 * 0.02562 * 18 17 16 38 38 H 1.07996 * 120.00941 * 180.23592 * 19 18 17 39 39 H 1.08001 * 120.00929 * 179.97438 * 22 20 19 40 40 H 1.08000 * 119.99176 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6024 1.9826 0.8396 5 6 3.5414 1.4444 0.1292 6 1 4.1495 1.8880 -0.6453 7 6 4.1388 0.8800 1.2362 8 7 5.4492 0.8812 1.3487 9 14 3.0872 0.1121 2.5755 10 1 2.8674 -1.3244 2.2699 11 1 3.7797 0.2397 3.8829 12 1 1.7782 0.8107 2.6385 13 7 1.6559 2.0976 -1.2575 14 6 1.5566 3.5529 -1.0839 15 6 1.0237 4.1849 -2.3714 16 6 0.9209 5.7007 -2.1908 17 6 0.3967 6.3233 -3.4590 18 6 1.2774 6.7380 -4.4406 19 6 0.7969 7.3047 -5.6061 20 6 -0.5651 7.4664 -5.7858 21 35 -1.2228 8.2487 -7.3768 22 6 -1.4458 7.0562 -4.8012 23 6 -0.9645 6.4844 -3.6384 24 1 -0.3633 -1.0265 -0.0496 25 1 -0.3633 0.4702 0.9138 26 1 -0.3633 0.5562 -0.8641 27 1 1.8933 -0.5138 -0.8899 28 1 1.8934 -0.5139 0.8900 29 1 5.8694 0.4838 2.1274 30 1 2.3005 1.8649 -1.9980 31 1 0.8765 3.7752 -0.2616 32 1 2.5425 3.9603 -0.8601 33 1 1.7039 3.9627 -3.1936 34 1 0.0378 3.7776 -2.5951 35 1 0.2410 5.9234 -1.3684 36 1 1.9070 6.1078 -1.9673 37 1 2.3410 6.6154 -4.2984 38 1 1.4848 7.6252 -6.3744 39 1 -2.5092 7.1826 -4.9408 40 1 -1.6521 6.1644 -2.8694 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255149708.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:20:57 Heat of formation + Delta-G solvation = 6.876100 kcal Electronic energy + Delta-G solvation = -18854.638451 eV Core-core repulsion = 15907.553182 eV Total energy + Delta-G solvation = -2947.085269 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 325.074 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.63061 -36.81115 -34.83325 -32.67840 -31.90790 -31.27517 -30.89527 -28.86323 -26.85138 -24.52609 -23.04451 -22.49069 -21.38711 -20.75616 -19.75540 -17.05767 -16.79888 -15.87601 -15.40307 -15.20363 -14.60282 -14.11634 -13.96188 -13.71442 -13.49068 -13.23317 -13.01715 -12.66918 -12.31883 -12.08747 -11.72833 -11.58922 -11.53945 -11.29016 -11.08685 -10.86027 -10.76797 -10.72328 -10.53756 -10.31346 -10.19010 -9.77172 -9.45343 -9.24660 -9.22509 -8.72512 -8.58941 -7.36697 -6.15002 -4.15953 0.87662 1.09088 1.39077 3.24390 3.34723 3.37164 3.39514 4.35100 4.52800 4.60159 4.67550 5.03109 5.06533 5.15255 5.20478 5.30553 5.39378 5.64984 5.69746 5.72682 5.84836 5.97316 5.99802 6.04267 6.06318 6.08821 6.22025 6.26786 6.36563 6.52898 6.61401 6.66131 6.69407 6.73987 6.97359 7.09521 7.26978 7.54913 8.02864 8.36878 8.47631 8.87361 9.48680 10.97951 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.033851 B = 0.002046 C = 0.001988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.947585 B =13683.654391 C =14082.292164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.116 4.116 3 C 0.183 3.817 4 H 0.031 0.969 5 C -0.546 4.546 6 H 0.072 0.928 7 C 0.072 3.928 8 N -0.899 5.899 9 Si 0.890 3.110 10 H -0.277 1.277 11 H -0.299 1.299 12 H -0.265 1.265 13 N -0.683 5.683 14 C 0.065 3.935 15 C -0.107 4.107 16 C -0.086 4.086 17 C -0.053 4.053 18 C -0.112 4.112 19 C -0.089 4.089 20 C -0.100 4.100 21 Br -0.061 7.061 22 C -0.090 4.090 23 C -0.113 4.113 24 H 0.032 0.968 25 H 0.037 0.963 26 H 0.063 0.937 27 H 0.057 0.943 28 H 0.044 0.956 29 H 0.264 0.736 30 H 0.334 0.666 31 H 0.059 0.941 32 H 0.032 0.968 33 H 0.059 0.941 34 H 0.066 0.934 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.132 0.868 38 H 0.130 0.870 39 H 0.130 0.870 40 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.406 15.385 -15.147 25.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.154 4.154 3 C 0.074 3.926 4 H 0.049 0.951 5 C -0.585 4.585 6 H 0.090 0.910 7 C -0.131 4.131 8 N -0.536 5.536 9 Si 0.721 3.279 10 H -0.204 1.204 11 H -0.226 1.226 12 H -0.190 1.190 13 N -0.312 5.312 14 C -0.065 4.065 15 C -0.145 4.145 16 C -0.124 4.124 17 C -0.054 4.054 18 C -0.131 4.131 19 C -0.109 4.109 20 C -0.179 4.179 21 Br 0.024 6.976 22 C -0.109 4.109 23 C -0.131 4.131 24 H 0.052 0.948 25 H 0.057 0.943 26 H 0.082 0.918 27 H 0.076 0.924 28 H 0.062 0.938 29 H 0.074 0.926 30 H 0.150 0.850 31 H 0.078 0.922 32 H 0.051 0.949 33 H 0.078 0.922 34 H 0.085 0.915 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.150 0.850 38 H 0.148 0.852 39 H 0.148 0.852 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -15.181 15.522 -15.532 26.696 hybrid contribution 0.785 -0.440 1.178 1.483 sum -14.396 15.082 -14.354 25.313 Atomic orbital electron populations 1.21738 0.97603 0.99422 1.01336 1.21817 0.93825 0.99406 1.00345 1.19559 0.94245 0.90632 0.88147 0.95120 1.21747 0.90587 1.39096 1.07029 0.91020 1.25020 0.94791 0.95299 0.97982 1.69923 1.08980 1.45073 1.29636 0.86801 0.80600 0.79888 0.80620 1.20444 1.22632 1.18953 1.60733 1.54772 1.06583 1.09063 1.21788 0.99214 0.89689 0.95849 1.21538 1.02014 0.92174 0.98813 1.20700 1.01845 0.96148 0.93663 1.20181 0.93349 0.95518 0.96324 1.21144 1.00316 0.98674 0.92991 1.21101 0.93349 0.98381 0.98035 1.21734 0.95708 1.06316 0.94138 1.96695 1.87750 1.81691 1.31443 1.21092 0.99426 0.97618 0.92796 1.21119 0.95281 0.99358 0.97385 0.94840 0.94340 0.91801 0.92437 0.93796 0.92636 0.85001 0.92197 0.94924 0.92195 0.91477 0.90626 0.90564 0.84962 0.85164 0.85200 0.85025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.62 9.83 37.16 0.37 -2.25 16 2 C -0.12 -2.51 5.11 -26.73 -0.14 -2.65 16 3 C 0.18 4.20 1.56 -68.87 -0.11 4.09 16 4 H 0.03 0.74 6.76 -51.93 -0.35 0.39 16 5 C -0.55 -14.85 9.05 -34.44 -0.31 -15.16 16 6 H 0.07 2.11 7.97 -52.48 -0.42 1.69 16 7 C 0.07 2.04 5.45 -17.82 -0.10 1.94 16 8 N -0.90 -27.14 13.96 55.43 0.77 -26.36 16 9 Si 0.89 21.86 24.41 -169.99 -4.15 17.71 16 10 H -0.28 -6.67 6.83 56.52 0.39 -6.28 16 11 H -0.30 -7.36 7.11 56.52 0.40 -6.96 16 12 H -0.26 -6.23 6.53 56.52 0.37 -5.86 16 13 N -0.68 -13.22 5.63 -107.96 -0.61 -13.83 16 14 C 0.06 1.09 5.51 -3.82 -0.02 1.07 16 15 C -0.11 -1.41 5.50 -26.73 -0.15 -1.55 16 16 C -0.09 -0.93 5.35 -27.89 -0.15 -1.08 16 17 C -0.05 -0.56 5.13 -104.62 -0.54 -1.09 16 18 C -0.11 -1.13 9.70 -39.59 -0.38 -1.51 16 19 C -0.09 -0.87 9.79 -39.56 -0.39 -1.25 16 20 C -0.10 -1.00 6.22 -39.52 -0.25 -1.24 16 21 Br -0.06 -0.55 33.70 -68.01 -2.29 -2.85 16 22 C -0.09 -0.85 9.79 -39.55 -0.39 -1.24 16 23 C -0.11 -1.10 9.70 -39.59 -0.38 -1.48 16 24 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.06 1.12 7.68 -51.93 -0.40 0.72 16 27 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 28 H 0.04 1.01 3.21 -51.93 -0.17 0.85 16 29 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 30 H 0.33 6.54 8.46 -39.29 -0.33 6.20 16 31 H 0.06 1.00 7.92 -51.93 -0.41 0.59 16 32 H 0.03 0.61 8.12 -51.93 -0.42 0.19 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.08 0.77 8.09 -51.93 -0.42 0.35 16 36 H 0.08 0.82 8.08 -51.93 -0.42 0.40 16 37 H 0.13 1.18 8.06 -52.49 -0.42 0.75 16 38 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 39 H 0.13 1.03 8.06 -52.49 -0.42 0.60 16 40 H 0.13 1.09 8.06 -52.49 -0.42 0.66 16 LS Contribution 343.41 15.07 5.18 5.18 Total: -1.00 -29.08 343.41 -10.36 -39.44 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: -6.33 Total: 4.15 kcal Atomic # 6 Polarization: -20.50 SS G_CDS: -2.93 Total: -23.43 kcal Atomic # 7 Polarization: -40.36 SS G_CDS: 0.17 Total: -40.19 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.15 Total: 17.71 kcal Atomic # 35 Polarization: -0.55 SS G_CDS: -2.29 Total: -2.85 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -29.08 -10.36 -39.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255149708.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.313 kcal (2) G-P(sol) polarization free energy of solvation -29.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds