Wall clock time and date at job start Tue Mar 31 2020 14:20:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47166 * 2 1 4 4 H 1.09000 * 109.47004 * 54.78026 * 3 2 1 5 5 C 1.50693 * 109.47135 * 174.78104 * 3 2 1 6 6 H 1.08009 * 120.00033 * 119.99866 * 5 3 2 7 7 C 1.37874 * 120.00188 * 299.99891 * 5 3 2 8 8 N 1.31523 * 120.00036 * 179.97438 * 7 5 3 9 9 Si 1.86796 * 120.00085 * 0.02562 * 7 5 3 10 10 H 1.48502 * 109.47379 * 89.99704 * 9 7 5 11 11 H 1.48496 * 109.47276 * 210.00198 * 9 7 5 12 12 H 1.48505 * 109.46820 * 329.99699 * 9 7 5 13 13 N 1.46903 * 109.47017 * 294.78138 * 3 2 1 14 14 C 1.46899 * 110.99970 * 154.13671 * 13 3 2 15 15 C 1.53002 * 109.47160 * 185.50164 * 14 13 3 16 16 C 1.52999 * 109.47022 * 180.02562 * 15 14 13 17 17 C 1.50692 * 109.47071 * 179.97438 * 16 15 14 18 18 C 1.38241 * 119.99340 * 269.72368 * 17 16 15 19 19 C 1.38221 * 120.01316 * 179.76878 * 18 17 16 20 20 C 1.38324 * 119.98861 * 0.50545 * 19 18 17 21 21 Br 1.89098 * 120.01199 * 179.72730 * 20 19 18 22 22 C 1.38327 * 119.98028 * 359.75117 * 20 19 18 23 23 C 1.38223 * 119.98798 * 359.97438 * 22 20 19 24 24 H 1.09002 * 109.47103 * 177.23346 * 1 2 3 25 25 H 1.09002 * 109.46949 * 297.22533 * 1 2 3 26 26 H 1.08996 * 109.47182 * 57.23197 * 1 2 3 27 27 H 1.08994 * 109.47046 * 239.99774 * 2 1 3 28 28 H 1.09006 * 109.47122 * 120.00224 * 2 1 3 29 29 H 0.96999 * 119.99288 * 180.02562 * 8 7 5 30 30 H 1.00896 * 110.99954 * 278.09556 * 13 3 2 31 31 H 1.08998 * 109.47257 * 305.50155 * 14 13 3 32 32 H 1.08998 * 109.47077 * 65.49548 * 14 13 3 33 33 H 1.08998 * 109.46839 * 299.99612 * 15 14 13 34 34 H 1.08999 * 109.47146 * 59.99928 * 15 14 13 35 35 H 1.08998 * 109.47201 * 299.99873 * 16 15 14 36 36 H 1.08999 * 109.47343 * 59.99896 * 16 15 14 37 37 H 1.07997 * 119.99190 * 0.02562 * 18 17 16 38 38 H 1.07996 * 120.00941 * 180.23592 * 19 18 17 39 39 H 1.08001 * 120.00929 * 179.97438 * 22 20 19 40 40 H 1.08000 * 119.99176 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6024 1.9826 0.8396 5 6 3.5414 1.4444 0.1292 6 1 4.1495 1.8880 -0.6453 7 6 4.1388 0.8800 1.2362 8 7 5.4492 0.8812 1.3487 9 14 3.0872 0.1121 2.5755 10 1 2.8674 -1.3244 2.2699 11 1 3.7797 0.2397 3.8829 12 1 1.7782 0.8107 2.6385 13 7 1.6559 2.0976 -1.2575 14 6 1.5566 3.5529 -1.0839 15 6 1.0237 4.1849 -2.3714 16 6 0.9209 5.7007 -2.1908 17 6 0.3967 6.3233 -3.4590 18 6 1.2774 6.7380 -4.4406 19 6 0.7969 7.3047 -5.6061 20 6 -0.5651 7.4664 -5.7858 21 35 -1.2228 8.2487 -7.3768 22 6 -1.4458 7.0562 -4.8012 23 6 -0.9645 6.4844 -3.6384 24 1 -0.3633 -1.0265 -0.0496 25 1 -0.3633 0.4702 0.9138 26 1 -0.3633 0.5562 -0.8641 27 1 1.8933 -0.5138 -0.8899 28 1 1.8934 -0.5139 0.8900 29 1 5.8694 0.4838 2.1274 30 1 2.3005 1.8649 -1.9980 31 1 0.8765 3.7752 -0.2616 32 1 2.5425 3.9603 -0.8601 33 1 1.7039 3.9627 -3.1936 34 1 0.0378 3.7776 -2.5951 35 1 0.2410 5.9234 -1.3684 36 1 1.9070 6.1078 -1.9673 37 1 2.3410 6.6154 -4.2984 38 1 1.4848 7.6252 -6.3744 39 1 -2.5092 7.1826 -4.9408 40 1 -1.6521 6.1644 -2.8694 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255149708.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:20:57 Heat of formation + Delta-G solvation = -8.936362 kcal Electronic energy + Delta-G solvation = -18855.324131 eV Core-core repulsion = 15907.553182 eV Total energy + Delta-G solvation = -2947.770949 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 325.074 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.38942 -38.41831 -36.02287 -34.29137 -33.50664 -32.00061 -31.94238 -30.00001 -28.50037 -25.78646 -24.16012 -23.77429 -22.51943 -21.88952 -21.35918 -19.09291 -17.59308 -17.12775 -16.70668 -16.26860 -15.86881 -15.58858 -15.32219 -14.90566 -14.53388 -14.42194 -14.23307 -14.06597 -13.75218 -13.54326 -13.16957 -13.03136 -12.68920 -12.48799 -12.43788 -12.18420 -12.12587 -11.77883 -11.63832 -11.54498 -11.45471 -11.25368 -11.25012 -11.16218 -10.68405 -9.97775 -9.49609 -9.06011 -8.34046 -6.38956 0.11042 0.35862 0.65648 1.30070 1.34498 1.45367 2.29368 2.63346 3.01686 3.51639 3.80446 3.89012 3.99265 4.14907 4.36136 4.41218 4.43553 4.48108 4.51390 4.54632 4.69055 4.76345 4.78704 4.90931 4.95386 5.03081 5.05335 5.16442 5.24187 5.25820 5.28524 5.34373 5.40992 5.47626 5.53932 5.65429 5.67441 5.87869 6.09597 6.42329 6.64632 6.80885 7.30298 8.82227 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.033851 B = 0.002046 C = 0.001988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.947585 B =13683.654391 C =14082.292164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.118 4.118 3 C 0.189 3.811 4 H 0.025 0.975 5 C -0.545 4.545 6 H 0.033 0.967 7 C 0.014 3.986 8 N -0.948 5.948 9 Si 0.951 3.049 10 H -0.267 1.267 11 H -0.301 1.301 12 H -0.246 1.246 13 N -0.672 5.672 14 C 0.065 3.935 15 C -0.092 4.092 16 C -0.078 4.078 17 C -0.064 4.064 18 C -0.121 4.121 19 C -0.096 4.096 20 C -0.110 4.110 21 Br -0.055 7.055 22 C -0.094 4.094 23 C -0.115 4.115 24 H 0.055 0.945 25 H 0.042 0.958 26 H 0.070 0.930 27 H 0.053 0.947 28 H 0.031 0.969 29 H 0.265 0.735 30 H 0.331 0.669 31 H 0.064 0.936 32 H 0.007 0.993 33 H 0.055 0.945 34 H 0.073 0.927 35 H 0.086 0.914 36 H 0.073 0.927 37 H 0.138 0.862 38 H 0.142 0.858 39 H 0.146 0.854 40 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.025 15.427 -15.238 27.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.156 4.156 3 C 0.079 3.921 4 H 0.043 0.957 5 C -0.584 4.584 6 H 0.051 0.949 7 C -0.184 4.184 8 N -0.588 5.588 9 Si 0.778 3.222 10 H -0.193 1.193 11 H -0.229 1.229 12 H -0.169 1.169 13 N -0.300 5.300 14 C -0.065 4.065 15 C -0.130 4.130 16 C -0.116 4.116 17 C -0.064 4.064 18 C -0.140 4.140 19 C -0.115 4.115 20 C -0.189 4.189 21 Br 0.030 6.970 22 C -0.114 4.114 23 C -0.134 4.134 24 H 0.074 0.926 25 H 0.061 0.939 26 H 0.089 0.911 27 H 0.072 0.928 28 H 0.049 0.951 29 H 0.074 0.926 30 H 0.147 0.853 31 H 0.083 0.917 32 H 0.026 0.974 33 H 0.074 0.926 34 H 0.091 0.909 35 H 0.104 0.896 36 H 0.092 0.908 37 H 0.156 0.844 38 H 0.159 0.841 39 H 0.163 0.837 40 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -17.825 15.576 -15.646 28.375 hybrid contribution 1.648 -0.374 1.096 2.014 sum -16.178 15.202 -14.550 26.543 Atomic orbital electron populations 1.21649 0.94474 1.01179 1.01898 1.21762 0.96589 0.97673 0.99577 1.19435 0.91059 0.92158 0.89485 0.95702 1.22087 0.92960 1.37661 1.05690 0.94896 1.25880 0.95839 0.96104 1.00606 1.70070 1.11006 1.46951 1.30729 0.85810 0.79516 0.79611 0.77243 1.19277 1.22901 1.16941 1.60776 1.53841 1.08031 1.07359 1.21878 0.98210 0.88206 0.98215 1.21371 1.01773 0.93550 0.96333 1.20593 1.02139 0.94371 0.94513 1.20163 0.93870 0.96280 0.96097 1.21301 1.00777 0.98744 0.93144 1.21276 0.93682 0.98316 0.98265 1.21927 0.95992 1.06378 0.94589 1.96697 1.87637 1.81583 1.31081 1.21320 1.00253 0.97223 0.92560 1.21326 0.95206 0.98981 0.97838 0.92557 0.93919 0.91067 0.92803 0.95055 0.92602 0.85284 0.91734 0.97413 0.92631 0.90851 0.89585 0.90840 0.84377 0.84067 0.83668 0.83463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.44 9.83 71.98 0.71 -3.73 16 2 C -0.12 -4.87 5.11 30.59 0.16 -4.72 16 3 C 0.19 8.50 1.56 44.17 0.07 8.57 16 4 H 0.03 1.17 6.76 -2.39 -0.02 1.15 16 5 C -0.54 -30.28 9.05 25.60 0.23 -30.05 16 6 H 0.03 2.03 7.97 -2.91 -0.02 2.01 16 7 C 0.01 0.79 5.45 84.65 0.46 1.25 16 8 N -0.95 -58.86 13.96 21.45 0.30 -58.56 16 9 Si 0.95 44.79 24.41 68.60 1.67 46.46 16 10 H -0.27 -12.02 6.83 99.48 0.68 -11.34 16 11 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 12 H -0.25 -10.71 6.53 99.48 0.65 -10.06 16 13 N -0.67 -25.54 5.63 -495.47 -2.79 -28.33 16 14 C 0.06 2.14 5.51 86.30 0.48 2.61 16 15 C -0.09 -2.30 5.50 30.59 0.17 -2.13 16 16 C -0.08 -1.60 5.35 29.85 0.16 -1.44 16 17 C -0.06 -1.23 5.13 -19.87 -0.10 -1.33 16 18 C -0.12 -2.30 9.70 22.27 0.22 -2.08 16 19 C -0.10 -1.75 9.79 22.29 0.22 -1.53 16 20 C -0.11 -2.02 6.22 22.31 0.14 -1.88 16 21 Br -0.06 -0.93 33.70 -20.37 -0.69 -1.61 16 22 C -0.09 -1.61 9.79 22.29 0.22 -1.39 16 23 C -0.11 -2.00 9.70 22.27 0.22 -1.78 16 24 H 0.06 1.60 8.14 -2.39 -0.02 1.59 16 25 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.07 2.24 7.68 -2.39 -0.02 2.22 16 27 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 28 H 0.03 1.37 3.21 -2.38 -0.01 1.36 16 29 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 30 H 0.33 13.00 8.46 -89.70 -0.76 12.24 16 31 H 0.06 2.07 7.92 -2.39 -0.02 2.06 16 32 H 0.01 0.29 8.12 -2.39 -0.02 0.27 16 33 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.09 1.58 8.09 -2.39 -0.02 1.56 16 36 H 0.07 1.53 8.08 -2.39 -0.02 1.52 16 37 H 0.14 2.36 8.06 -2.91 -0.02 2.34 16 38 H 0.14 2.16 8.06 -2.91 -0.02 2.14 16 39 H 0.15 1.96 8.06 -2.91 -0.02 1.94 16 40 H 0.15 2.03 8.06 -2.91 -0.02 2.01 16 Total: -1.00 -62.77 343.41 2.00 -60.76 By element: Atomic # 1 Polarization: 20.75 SS G_CDS: 0.17 Total: 20.93 kcal Atomic # 6 Polarization: -42.98 SS G_CDS: 3.34 Total: -39.64 kcal Atomic # 7 Polarization: -84.40 SS G_CDS: -2.49 Total: -86.89 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 1.67 Total: 46.46 kcal Atomic # 35 Polarization: -0.93 SS G_CDS: -0.69 Total: -1.61 kcal Total: -62.77 2.00 -60.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255149708.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.826 kcal (2) G-P(sol) polarization free energy of solvation -62.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds