Wall clock time and date at job start Tue Mar 31 2020 14:21:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53010 * 109.47066 * 2 1 4 4 H 1.08997 * 109.46677 * 55.04969 * 3 2 1 5 5 C 1.50702 * 109.46899 * 175.04821 * 3 2 1 6 6 H 1.07998 * 119.99919 * 119.72701 * 5 3 2 7 7 C 1.37872 * 120.00105 * 300.00100 * 5 3 2 8 8 N 1.31518 * 120.00161 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99872 * 180.02562 * 7 5 3 10 10 H 1.48493 * 109.47193 * 359.97438 * 9 7 5 11 11 H 1.48506 * 109.47195 * 120.00100 * 9 7 5 12 12 H 1.48501 * 109.46997 * 240.00098 * 9 7 5 13 13 N 1.46900 * 109.47175 * 295.04909 * 3 2 1 14 14 C 1.46902 * 110.99616 * 137.73506 * 13 3 2 15 15 C 1.53002 * 109.47031 * 297.04153 * 14 13 3 16 16 C 1.52997 * 109.46963 * 57.04327 * 14 13 3 17 17 C 1.50700 * 109.46473 * 177.04482 * 14 13 3 18 18 C 1.38238 * 119.99341 * 359.72295 * 17 14 13 19 19 C 1.38225 * 120.00695 * 179.76645 * 18 17 14 20 20 C 1.38321 * 119.99086 * 0.50916 * 19 18 17 21 21 Br 1.89100 * 120.00993 * 179.72220 * 20 19 18 22 22 C 1.38320 * 119.97915 * 359.74523 * 20 19 18 23 23 C 1.38224 * 119.99300 * 0.02562 * 22 20 19 24 24 H 1.09002 * 109.47410 * 65.10503 * 1 2 3 25 25 H 1.08996 * 109.47321 * 185.10590 * 1 2 3 26 26 H 1.09005 * 109.47648 * 305.10723 * 1 2 3 27 27 H 1.09000 * 109.47284 * 240.00111 * 2 1 3 28 28 H 1.09002 * 109.47373 * 119.99906 * 2 1 3 29 29 H 0.96997 * 120.00116 * 179.97438 * 8 7 5 30 30 H 1.00895 * 110.99726 * 261.69174 * 13 3 2 31 31 H 1.09000 * 109.47051 * 66.19970 * 15 14 13 32 32 H 1.09003 * 109.46984 * 186.19474 * 15 14 13 33 33 H 1.08995 * 109.47204 * 306.19971 * 15 14 13 34 34 H 1.09001 * 109.46834 * 54.64249 * 16 14 13 35 35 H 1.09000 * 109.46715 * 174.63965 * 16 14 13 36 36 H 1.08993 * 109.47639 * 294.63833 * 16 14 13 37 37 H 1.08001 * 119.99616 * 0.02562 * 18 17 14 38 38 H 1.07997 * 119.99994 * 180.23440 * 19 18 17 39 39 H 1.08004 * 120.00363 * 179.97438 * 22 20 19 40 40 H 1.08001 * 119.99626 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6060 1.9813 0.8423 5 6 3.5419 1.4443 0.1226 6 1 4.1468 1.8852 -0.6559 7 6 4.1442 0.8781 1.2261 8 7 3.4079 0.3360 2.1714 9 14 6.0060 0.8809 1.3784 10 1 6.5988 1.5462 0.1905 11 1 6.4011 1.6160 2.6068 12 1 6.4982 -0.5179 1.4587 13 7 1.6503 2.0997 -1.2547 14 6 1.1768 3.4682 -1.0073 15 6 -0.0810 3.4231 -0.1373 16 6 2.2676 4.2626 -0.2861 17 6 0.8557 4.1337 -2.3207 18 6 1.0330 3.4448 -3.5060 19 6 0.7339 4.0532 -4.7105 20 6 0.2673 5.3552 -4.7304 21 35 -0.1345 6.1908 -6.3785 22 6 0.0951 6.0459 -3.5444 23 6 0.3898 5.4351 -2.3400 24 1 -0.3634 0.4326 -0.9322 25 1 -0.3634 -1.0235 0.0915 26 1 -0.3634 0.5910 0.8407 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.8316 -0.0627 2.9476 30 1 2.4114 2.0946 -1.9170 31 1 0.1747 3.0430 0.8517 32 1 -0.4949 4.4273 -0.0448 33 1 -0.8188 2.7671 -0.5991 34 1 3.1923 4.2146 -0.8612 35 1 1.9547 5.3020 -0.1872 36 1 2.4327 3.8372 0.7037 37 1 1.4012 2.4296 -3.4906 38 1 0.8689 3.5136 -5.6362 39 1 -0.2689 7.0626 -3.5595 40 1 0.2558 5.9745 -1.4140 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255152883.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:21:06 Heat of formation + Delta-G solvation = 18.060445 kcal Electronic energy + Delta-G solvation = -20323.599315 eV Core-core repulsion = 17376.999035 eV Total energy + Delta-G solvation = -2946.600279 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 325.074 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.71631 -37.17924 -34.04348 -31.89734 -31.32556 -31.04841 -29.35499 -28.33553 -26.65708 -26.08416 -23.17452 -22.39263 -22.23240 -19.82031 -18.55177 -17.18681 -16.26340 -15.41726 -14.90000 -14.72132 -14.13850 -13.85064 -13.63946 -13.37926 -13.21167 -12.80158 -12.55554 -12.09785 -12.00202 -11.66218 -11.52482 -11.27938 -11.19723 -11.08520 -10.86552 -10.74164 -10.63678 -10.53321 -10.31479 -10.24504 -10.04571 -9.60501 -9.49434 -8.94369 -8.89450 -8.43366 -8.37340 -7.33407 -6.04349 -4.14520 1.23105 1.44298 1.64704 3.23414 3.32777 3.35456 3.76665 4.36362 4.82609 4.95903 5.00500 5.15548 5.26218 5.49548 5.54753 5.66157 5.75460 5.87794 6.07923 6.12714 6.22532 6.25856 6.33617 6.37425 6.45800 6.50702 6.56299 6.68339 6.73312 6.83308 6.93932 7.00838 7.13217 7.17233 7.47011 7.56747 7.75138 8.05500 8.10151 8.31075 8.61495 8.97705 9.52263 10.97275 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.023030 B = 0.003165 C = 0.003031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.527703 B = 8845.931730 C = 9236.855917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.105 4.105 3 C 0.214 3.786 4 H 0.037 0.963 5 C -0.535 4.535 6 H 0.054 0.946 7 C 0.067 3.933 8 N -0.884 5.884 9 Si 0.886 3.114 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.284 1.284 13 N -0.679 5.679 14 C 0.150 3.850 15 C -0.131 4.131 16 C -0.163 4.163 17 C -0.038 4.038 18 C -0.099 4.099 19 C -0.093 4.093 20 C -0.101 4.101 21 Br -0.070 7.070 22 C -0.095 4.095 23 C -0.114 4.114 24 H 0.046 0.954 25 H 0.023 0.977 26 H 0.035 0.965 27 H 0.030 0.970 28 H 0.088 0.912 29 H 0.260 0.740 30 H 0.330 0.670 31 H 0.066 0.934 32 H 0.046 0.954 33 H 0.060 0.940 34 H 0.052 0.948 35 H 0.039 0.961 36 H 0.078 0.922 37 H 0.145 0.855 38 H 0.127 0.873 39 H 0.126 0.874 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.922 10.790 -12.452 18.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.144 4.144 3 C 0.107 3.893 4 H 0.055 0.945 5 C -0.574 4.574 6 H 0.072 0.928 7 C -0.135 4.135 8 N -0.523 5.523 9 Si 0.714 3.286 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.210 1.210 13 N -0.310 5.310 14 C 0.057 3.943 15 C -0.188 4.188 16 C -0.222 4.222 17 C -0.038 4.038 18 C -0.118 4.118 19 C -0.113 4.113 20 C -0.180 4.180 21 Br 0.016 6.984 22 C -0.115 4.115 23 C -0.133 4.133 24 H 0.065 0.935 25 H 0.042 0.958 26 H 0.055 0.945 27 H 0.049 0.951 28 H 0.107 0.893 29 H 0.070 0.930 30 H 0.148 0.852 31 H 0.085 0.915 32 H 0.065 0.935 33 H 0.079 0.921 34 H 0.072 0.928 35 H 0.058 0.942 36 H 0.097 0.903 37 H 0.163 0.837 38 H 0.145 0.855 39 H 0.144 0.856 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -8.694 10.724 -12.890 18.887 hybrid contribution 2.060 0.238 0.700 2.189 sum -6.634 10.962 -12.190 17.685 Atomic orbital electron populations 1.21727 0.99222 0.98260 1.00152 1.21510 0.91887 0.99457 1.01548 1.19216 0.93088 0.91051 0.85980 0.94512 1.21814 0.92319 1.37994 1.05317 0.92775 1.24897 0.97728 0.95053 0.95834 1.69884 1.34645 1.38285 1.09476 0.86640 0.86286 0.77736 0.77925 1.19939 1.21130 1.21031 1.61129 1.41189 1.13258 1.15413 1.19711 0.94974 0.89794 0.89774 1.21908 0.96453 1.00475 1.00004 1.22505 0.98462 0.98466 1.02797 1.20258 0.94664 0.93231 0.95693 1.21257 0.98827 1.00997 0.90671 1.21121 0.98274 0.92893 0.99027 1.21667 1.08629 0.96745 0.90986 1.96643 1.93817 1.80630 1.27357 1.20975 0.99830 0.99661 0.91004 1.21003 0.99978 0.94946 0.97386 0.93532 0.95813 0.94545 0.95098 0.89345 0.92979 0.85154 0.91502 0.93493 0.92133 0.92838 0.94204 0.90339 0.83731 0.85464 0.85607 0.85421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.67 9.74 37.15 0.36 -2.31 16 2 C -0.11 -2.40 5.45 -26.73 -0.15 -2.54 16 3 C 0.21 4.81 1.16 -68.86 -0.08 4.73 16 4 H 0.04 0.91 4.99 -51.93 -0.26 0.65 16 5 C -0.54 -13.40 7.49 -34.44 -0.26 -13.66 16 6 H 0.05 1.36 7.48 -52.49 -0.39 0.97 16 7 C 0.07 1.75 5.29 -17.82 -0.09 1.66 16 8 N -0.88 -23.91 11.29 55.43 0.63 -23.28 16 9 Si 0.89 20.46 29.54 -169.99 -5.02 15.44 16 10 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 11 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 12 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 13 N -0.68 -12.77 4.61 -95.41 -0.44 -13.21 16 14 C 0.15 2.48 0.78 -132.75 -0.10 2.37 16 15 C -0.13 -2.10 8.20 37.16 0.30 -1.79 16 16 C -0.16 -2.84 7.52 37.16 0.28 -2.56 16 17 C -0.04 -0.56 4.77 -104.62 -0.50 -1.05 16 18 C -0.10 -1.41 9.12 -39.59 -0.36 -1.77 16 19 C -0.09 -1.21 9.79 -39.56 -0.39 -1.60 16 20 C -0.10 -1.28 6.22 -39.52 -0.25 -1.53 16 21 Br -0.07 -0.77 33.70 -68.01 -2.29 -3.07 16 22 C -0.09 -1.16 9.79 -39.56 -0.39 -1.55 16 23 C -0.11 -1.49 8.58 -39.59 -0.34 -1.83 16 24 H 0.05 0.87 7.90 -51.93 -0.41 0.46 16 25 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.09 2.28 5.95 -51.93 -0.31 1.97 16 29 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 30 H 0.33 6.29 6.64 -39.29 -0.26 6.03 16 31 H 0.07 1.19 6.42 -51.93 -0.33 0.85 16 32 H 0.05 0.64 7.19 -51.93 -0.37 0.27 16 33 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.04 0.59 7.21 -51.93 -0.37 0.22 16 36 H 0.08 1.58 6.53 -51.93 -0.34 1.24 16 37 H 0.15 2.10 6.33 -52.49 -0.33 1.76 16 38 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 39 H 0.13 1.30 8.06 -52.48 -0.42 0.88 16 40 H 0.13 1.49 7.04 -52.49 -0.37 1.12 16 LS Contribution 333.15 15.07 5.02 5.02 Total: -1.00 -25.40 333.15 -9.91 -35.31 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -5.85 Total: 7.22 kcal Atomic # 6 Polarization: -21.48 SS G_CDS: -1.96 Total: -23.44 kcal Atomic # 7 Polarization: -36.68 SS G_CDS: 0.19 Total: -36.49 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Atomic # 35 Polarization: -0.77 SS G_CDS: -2.29 Total: -3.07 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -25.40 -9.91 -35.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255152883.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.370 kcal (2) G-P(sol) polarization free energy of solvation -25.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.309 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds