Wall clock time and date at job start Tue Mar 31 2020 14:21:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53010 * 109.47066 * 2 1 4 4 H 1.08997 * 109.46677 * 55.04969 * 3 2 1 5 5 C 1.50702 * 109.46899 * 175.04821 * 3 2 1 6 6 H 1.07998 * 119.99919 * 119.72701 * 5 3 2 7 7 C 1.37872 * 120.00105 * 300.00100 * 5 3 2 8 8 N 1.31518 * 120.00161 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99872 * 180.02562 * 7 5 3 10 10 H 1.48493 * 109.47193 * 359.97438 * 9 7 5 11 11 H 1.48506 * 109.47195 * 120.00100 * 9 7 5 12 12 H 1.48501 * 109.46997 * 240.00098 * 9 7 5 13 13 N 1.46900 * 109.47175 * 295.04909 * 3 2 1 14 14 C 1.46902 * 110.99616 * 137.73506 * 13 3 2 15 15 C 1.53002 * 109.47031 * 297.04153 * 14 13 3 16 16 C 1.52997 * 109.46963 * 57.04327 * 14 13 3 17 17 C 1.50700 * 109.46473 * 177.04482 * 14 13 3 18 18 C 1.38238 * 119.99341 * 359.72295 * 17 14 13 19 19 C 1.38225 * 120.00695 * 179.76645 * 18 17 14 20 20 C 1.38321 * 119.99086 * 0.50916 * 19 18 17 21 21 Br 1.89100 * 120.00993 * 179.72220 * 20 19 18 22 22 C 1.38320 * 119.97915 * 359.74523 * 20 19 18 23 23 C 1.38224 * 119.99300 * 0.02562 * 22 20 19 24 24 H 1.09002 * 109.47410 * 65.10503 * 1 2 3 25 25 H 1.08996 * 109.47321 * 185.10590 * 1 2 3 26 26 H 1.09005 * 109.47648 * 305.10723 * 1 2 3 27 27 H 1.09000 * 109.47284 * 240.00111 * 2 1 3 28 28 H 1.09002 * 109.47373 * 119.99906 * 2 1 3 29 29 H 0.96997 * 120.00116 * 179.97438 * 8 7 5 30 30 H 1.00895 * 110.99726 * 261.69174 * 13 3 2 31 31 H 1.09000 * 109.47051 * 66.19970 * 15 14 13 32 32 H 1.09003 * 109.46984 * 186.19474 * 15 14 13 33 33 H 1.08995 * 109.47204 * 306.19971 * 15 14 13 34 34 H 1.09001 * 109.46834 * 54.64249 * 16 14 13 35 35 H 1.09000 * 109.46715 * 174.63965 * 16 14 13 36 36 H 1.08993 * 109.47639 * 294.63833 * 16 14 13 37 37 H 1.08001 * 119.99616 * 0.02562 * 18 17 14 38 38 H 1.07997 * 119.99994 * 180.23440 * 19 18 17 39 39 H 1.08004 * 120.00363 * 179.97438 * 22 20 19 40 40 H 1.08001 * 119.99626 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6060 1.9813 0.8423 5 6 3.5419 1.4443 0.1226 6 1 4.1468 1.8852 -0.6559 7 6 4.1442 0.8781 1.2261 8 7 3.4079 0.3360 2.1714 9 14 6.0060 0.8809 1.3784 10 1 6.5988 1.5462 0.1905 11 1 6.4011 1.6160 2.6068 12 1 6.4982 -0.5179 1.4587 13 7 1.6503 2.0997 -1.2547 14 6 1.1768 3.4682 -1.0073 15 6 -0.0810 3.4231 -0.1373 16 6 2.2676 4.2626 -0.2861 17 6 0.8557 4.1337 -2.3207 18 6 1.0330 3.4448 -3.5060 19 6 0.7339 4.0532 -4.7105 20 6 0.2673 5.3552 -4.7304 21 35 -0.1345 6.1908 -6.3785 22 6 0.0951 6.0459 -3.5444 23 6 0.3898 5.4351 -2.3400 24 1 -0.3634 0.4326 -0.9322 25 1 -0.3634 -1.0235 0.0915 26 1 -0.3634 0.5910 0.8407 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.8316 -0.0627 2.9476 30 1 2.4114 2.0946 -1.9170 31 1 0.1747 3.0430 0.8517 32 1 -0.4949 4.4273 -0.0448 33 1 -0.8188 2.7671 -0.5991 34 1 3.1923 4.2146 -0.8612 35 1 1.9547 5.3020 -0.1872 36 1 2.4327 3.8372 0.7037 37 1 1.4012 2.4296 -3.4906 38 1 0.8689 3.5136 -5.6362 39 1 -0.2689 7.0626 -3.5595 40 1 0.2558 5.9745 -1.4140 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255152883.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:21:06 Heat of formation + Delta-G solvation = 6.908120 kcal Electronic energy + Delta-G solvation = -20324.082916 eV Core-core repulsion = 17376.999035 eV Total energy + Delta-G solvation = -2947.083880 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 325.074 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.87800 -38.57544 -35.67256 -33.56736 -32.57703 -32.14702 -30.79371 -29.45103 -28.16342 -27.77146 -24.82450 -23.59947 -23.40510 -21.38226 -19.99865 -18.83385 -17.67853 -16.81198 -16.42410 -15.99923 -15.48153 -15.32547 -14.98257 -14.61887 -14.42101 -14.40876 -13.86468 -13.62878 -13.44570 -13.12852 -13.05174 -12.87414 -12.82458 -12.52144 -12.44158 -12.22434 -12.10949 -11.82343 -11.63566 -11.54486 -11.35688 -11.23764 -11.19779 -10.78351 -10.37488 -9.89642 -9.45891 -8.95883 -8.02015 -6.18568 0.19211 0.43815 0.69245 1.37540 1.42228 1.50086 2.43057 2.72554 3.20571 3.58210 3.81370 3.95595 4.05560 4.27249 4.40479 4.49541 4.56970 4.68571 4.79618 4.82846 4.83774 4.90180 4.97857 5.03663 5.06978 5.11467 5.23327 5.30434 5.35534 5.40079 5.50751 5.53826 5.63711 5.65787 5.76131 5.88958 5.93487 6.16993 6.29822 6.49785 6.89714 7.11047 7.51101 8.96586 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.023030 B = 0.003165 C = 0.003031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.527703 B = 8845.931730 C = 9236.855917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.103 4.103 3 C 0.225 3.775 4 H 0.016 0.984 5 C -0.539 4.539 6 H 0.049 0.951 7 C 0.022 3.978 8 N -0.910 5.910 9 Si 0.940 3.060 10 H -0.271 1.271 11 H -0.285 1.285 12 H -0.285 1.285 13 N -0.671 5.671 14 C 0.151 3.849 15 C -0.125 4.125 16 C -0.155 4.155 17 C -0.051 4.051 18 C -0.109 4.109 19 C -0.095 4.095 20 C -0.107 4.107 21 Br -0.054 7.054 22 C -0.092 4.092 23 C -0.113 4.113 24 H 0.056 0.944 25 H 0.037 0.963 26 H 0.032 0.968 27 H 0.023 0.977 28 H 0.057 0.943 29 H 0.259 0.741 30 H 0.329 0.671 31 H 0.042 0.958 32 H 0.073 0.927 33 H 0.058 0.942 34 H 0.039 0.961 35 H 0.066 0.934 36 H 0.044 0.956 37 H 0.136 0.864 38 H 0.141 0.859 39 H 0.149 0.851 40 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.611 12.342 -13.895 20.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.142 4.142 3 C 0.117 3.883 4 H 0.034 0.966 5 C -0.578 4.578 6 H 0.067 0.933 7 C -0.178 4.178 8 N -0.550 5.550 9 Si 0.768 3.232 10 H -0.196 1.196 11 H -0.211 1.211 12 H -0.211 1.211 13 N -0.301 5.301 14 C 0.059 3.941 15 C -0.183 4.183 16 C -0.214 4.214 17 C -0.052 4.052 18 C -0.128 4.128 19 C -0.114 4.114 20 C -0.186 4.186 21 Br 0.032 6.968 22 C -0.111 4.111 23 C -0.132 4.132 24 H 0.075 0.925 25 H 0.056 0.944 26 H 0.051 0.949 27 H 0.042 0.958 28 H 0.075 0.925 29 H 0.068 0.932 30 H 0.147 0.853 31 H 0.061 0.939 32 H 0.092 0.908 33 H 0.077 0.923 34 H 0.059 0.941 35 H 0.085 0.915 36 H 0.063 0.937 37 H 0.154 0.846 38 H 0.159 0.841 39 H 0.166 0.834 40 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -9.386 12.285 -14.349 21.093 hybrid contribution 2.243 -0.179 1.064 2.489 sum -7.143 12.105 -13.285 19.340 Atomic orbital electron populations 1.21564 0.96698 0.99207 1.00487 1.21388 0.94127 0.99119 0.99564 1.18929 0.91525 0.91033 0.86819 0.96641 1.22108 0.93834 1.37047 1.04838 0.93296 1.25530 1.01142 0.95204 0.95888 1.70004 1.35881 1.39243 1.09887 0.85783 0.82261 0.77458 0.77733 1.19599 1.21113 1.21073 1.61043 1.40605 1.14997 1.13480 1.19718 0.94745 0.88396 0.91214 1.21851 0.96112 1.01920 0.98402 1.22385 0.98344 1.00032 1.00636 1.20069 0.96459 0.94169 0.94497 1.21226 0.99522 1.00866 0.91229 1.21249 0.97903 0.93257 0.99022 1.21875 1.07983 0.96732 0.92001 1.96666 1.93657 1.80209 1.26299 1.21234 0.98921 1.00548 0.90419 1.21152 0.99361 0.94167 0.98541 0.92501 0.94421 0.94888 0.95806 0.92467 0.93187 0.85329 0.93880 0.90810 0.92339 0.94140 0.91496 0.93673 0.84586 0.84140 0.83368 0.83835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.76 9.74 71.98 0.70 -4.06 16 2 C -0.10 -4.78 5.45 30.59 0.17 -4.61 16 3 C 0.23 10.35 1.16 44.17 0.05 10.40 16 4 H 0.02 0.80 4.99 -2.39 -0.01 0.79 16 5 C -0.54 -27.55 7.49 25.60 0.19 -27.36 16 6 H 0.05 2.50 7.48 -2.91 -0.02 2.48 16 7 C 0.02 1.16 5.29 84.65 0.45 1.61 16 8 N -0.91 -50.52 11.29 21.45 0.24 -50.28 16 9 Si 0.94 42.59 29.54 68.60 2.03 44.61 16 10 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 11 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 12 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 13 N -0.67 -25.38 4.61 -455.76 -2.10 -27.48 16 14 C 0.15 4.91 0.78 2.78 0.00 4.92 16 15 C -0.13 -3.91 8.20 71.98 0.59 -3.32 16 16 C -0.16 -5.35 7.52 71.98 0.54 -4.81 16 17 C -0.05 -1.43 4.77 -19.86 -0.09 -1.52 16 18 C -0.11 -2.99 9.12 22.27 0.20 -2.78 16 19 C -0.09 -2.26 9.79 22.29 0.22 -2.05 16 20 C -0.11 -2.41 6.22 22.31 0.14 -2.27 16 21 Br -0.05 -1.05 33.70 -20.37 -0.69 -1.74 16 22 C -0.09 -1.96 9.79 22.29 0.22 -1.74 16 23 C -0.11 -2.65 8.58 22.27 0.19 -2.46 16 24 H 0.06 2.08 7.90 -2.39 -0.02 2.06 16 25 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.03 1.28 8.14 -2.38 -0.02 1.26 16 27 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.06 3.03 5.95 -2.39 -0.01 3.01 16 29 H 0.26 13.82 8.31 -92.71 -0.77 13.05 16 30 H 0.33 12.65 6.64 -89.70 -0.60 12.06 16 31 H 0.04 1.54 6.42 -2.39 -0.02 1.52 16 32 H 0.07 1.87 7.19 -2.39 -0.02 1.85 16 33 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.07 1.89 7.21 -2.39 -0.02 1.88 16 36 H 0.04 1.85 6.53 -2.39 -0.02 1.83 16 37 H 0.14 3.88 6.33 -2.91 -0.02 3.87 16 38 H 0.14 2.90 8.06 -2.91 -0.02 2.88 16 39 H 0.15 2.49 8.06 -2.91 -0.02 2.46 16 40 H 0.14 2.85 7.04 -2.91 -0.02 2.83 16 Total: -1.00 -54.53 333.15 3.49 -51.04 By element: Atomic # 1 Polarization: 23.46 SS G_CDS: 0.44 Total: 23.90 kcal Atomic # 6 Polarization: -43.62 SS G_CDS: 3.57 Total: -40.05 kcal Atomic # 7 Polarization: -75.90 SS G_CDS: -1.86 Total: -77.76 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.61 kcal Atomic # 35 Polarization: -1.05 SS G_CDS: -0.69 Total: -1.74 kcal Total: -54.53 3.49 -51.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255152883.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.944 kcal (2) G-P(sol) polarization free energy of solvation -54.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.036 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds