Wall clock time and date at job start Tue Mar 31 2020 14:21:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.46884 * 2 1 4 4 H 1.08998 * 109.47202 * 54.75123 * 3 2 1 5 5 C 1.50698 * 109.46799 * 174.75691 * 3 2 1 6 6 H 1.08001 * 120.00029 * 120.00238 * 5 3 2 7 7 C 1.37880 * 119.99748 * 299.99611 * 5 3 2 8 8 N 1.31514 * 119.99841 * 180.02562 * 7 5 3 9 9 Si 1.86796 * 120.00205 * 0.02562 * 7 5 3 10 10 H 1.48491 * 109.47266 * 89.99730 * 9 7 5 11 11 H 1.48502 * 109.47337 * 210.00090 * 9 7 5 12 12 H 1.48505 * 109.47019 * 329.99379 * 9 7 5 13 13 N 1.46896 * 109.47013 * 294.75175 * 3 2 1 14 14 C 1.46907 * 110.99888 * 143.88964 * 13 3 2 15 15 C 1.53002 * 109.46623 * 54.89036 * 14 13 3 16 16 C 1.52994 * 109.47272 * 294.88863 * 14 13 3 17 17 C 1.50696 * 109.47184 * 174.88749 * 14 13 3 18 18 C 1.38245 * 120.00490 * 359.10798 * 17 14 13 19 19 C 1.38214 * 120.00868 * 180.02562 * 18 17 14 20 20 C 1.38270 * 120.02323 * 0.02562 * 19 18 17 21 21 C 1.38189 * 120.00662 * 0.02562 * 20 19 18 22 22 C 1.38299 * 120.00712 * 179.15077 * 17 14 13 23 23 Br 1.89105 * 120.00779 * 0.02562 * 22 17 14 24 24 H 1.09010 * 109.46840 * 305.90821 * 1 2 3 25 25 H 1.08995 * 109.47437 * 65.90456 * 1 2 3 26 26 H 1.08998 * 109.47253 * 185.91319 * 1 2 3 27 27 H 1.08997 * 109.46987 * 240.00253 * 2 1 3 28 28 H 1.08998 * 109.47457 * 119.99629 * 2 1 3 29 29 H 0.96997 * 119.99876 * 180.02562 * 8 7 5 30 30 H 1.00902 * 111.00141 * 19.93806 * 13 3 2 31 31 H 1.09000 * 109.46529 * 180.98355 * 15 14 13 32 32 H 1.08997 * 109.47041 * 300.97717 * 15 14 13 33 33 H 1.08994 * 109.47168 * 60.98356 * 15 14 13 34 34 H 1.09000 * 109.47331 * 296.71171 * 16 14 13 35 35 H 1.09007 * 109.47353 * 56.70459 * 16 14 13 36 36 H 1.09001 * 109.47300 * 176.70917 * 16 14 13 37 37 H 1.07997 * 119.99573 * 0.02880 * 18 17 14 38 38 H 1.08001 * 119.99152 * 180.27686 * 19 18 17 39 39 H 1.08001 * 119.99459 * 179.97438 * 20 19 18 40 40 H 1.08000 * 120.00527 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6019 1.9828 0.8392 5 6 3.5413 1.4445 0.1298 6 1 4.1497 1.8880 -0.6445 7 6 4.1382 0.8802 1.2372 8 7 5.4485 0.8824 1.3508 9 14 3.0860 0.1127 2.5762 10 1 2.8663 -1.3238 2.2707 11 1 3.7779 0.2405 3.8839 12 1 1.7770 0.8113 2.6386 13 7 1.6564 2.0975 -1.2577 14 6 1.3209 3.5102 -1.0346 15 6 2.4901 4.2079 -0.3366 16 6 0.0721 3.6052 -0.1559 17 6 1.0553 4.1786 -2.3589 18 6 1.1669 3.4565 -3.5325 19 6 0.9239 4.0696 -4.7471 20 6 0.5696 5.4054 -4.7892 21 6 0.4588 6.1283 -3.6167 22 6 0.7008 5.5147 -2.4005 23 35 0.5498 6.5035 -0.7956 24 1 -0.3633 0.6028 0.8325 25 1 -0.3634 0.4195 -0.9381 26 1 -0.3633 -1.0222 0.1059 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 5.8684 0.4851 2.1297 30 1 0.8922 1.6099 -1.7009 31 1 2.2343 5.2518 -0.1554 32 1 2.6934 3.7135 0.6133 33 1 3.3752 4.1554 -0.9704 34 1 -0.7745 3.1597 -0.6783 35 1 0.2440 3.0713 0.7788 36 1 -0.1430 4.6522 0.0579 37 1 1.4440 2.4132 -3.5002 38 1 1.0068 3.5040 -5.6635 39 1 0.3802 5.8841 -5.7386 40 1 0.1824 7.1718 -3.6496 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255154465.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:21:11 Heat of formation + Delta-G solvation = 44.369557 kcal Electronic energy + Delta-G solvation = -20831.472996 eV Core-core repulsion = 17886.013566 eV Total energy + Delta-G solvation = -2945.459431 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 325.074 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.80518 -37.41461 -34.28667 -32.32820 -31.89614 -30.22085 -29.16152 -28.70374 -27.25759 -26.32600 -22.92578 -22.60240 -22.03051 -20.19147 -18.77997 -16.98796 -16.56551 -15.64578 -15.02782 -14.73651 -14.46192 -14.01065 -13.59370 -13.38220 -13.30856 -13.22427 -12.74932 -12.62061 -12.27410 -11.94314 -11.77096 -11.66747 -11.51671 -11.08433 -11.02163 -10.72415 -10.58053 -10.36932 -10.19148 -10.00571 -9.87432 -9.42575 -9.28037 -8.95750 -8.70664 -8.47776 -8.45899 -7.37008 -5.99554 -3.94327 1.22253 1.44488 1.74677 3.26581 3.37150 3.39583 3.76062 4.43316 4.73025 4.87721 5.04398 5.13958 5.26684 5.38365 5.56874 5.62058 5.69333 5.73221 5.81786 5.82332 5.94313 6.03776 6.14422 6.25706 6.31044 6.41512 6.48874 6.50601 6.55462 6.62326 6.67272 6.69321 6.81999 6.91022 6.98119 7.22738 7.32052 7.77531 7.97594 8.27174 8.78804 9.15102 9.63701 11.13841 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.017579 B = 0.005209 C = 0.004741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.392889 B = 5373.576937 C = 5904.104601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.141 4.141 3 C 0.188 3.812 4 H 0.016 0.984 5 C -0.484 4.484 6 H 0.083 0.917 7 C 0.065 3.935 8 N -0.902 5.902 9 Si 0.877 3.123 10 H -0.281 1.281 11 H -0.298 1.298 12 H -0.268 1.268 13 N -0.662 5.662 14 C 0.153 3.847 15 C -0.145 4.145 16 C -0.200 4.200 17 C -0.026 4.026 18 C -0.097 4.097 19 C -0.108 4.108 20 C -0.129 4.129 21 C -0.096 4.096 22 C -0.089 4.089 23 Br -0.045 7.045 24 H 0.046 0.954 25 H 0.048 0.952 26 H 0.044 0.956 27 H 0.066 0.934 28 H 0.054 0.946 29 H 0.261 0.739 30 H 0.320 0.680 31 H 0.058 0.942 32 H 0.081 0.919 33 H 0.059 0.941 34 H 0.045 0.955 35 H 0.066 0.934 36 H 0.077 0.923 37 H 0.146 0.854 38 H 0.125 0.875 39 H 0.125 0.875 40 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.295 10.155 -8.553 18.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.179 4.179 3 C 0.079 3.921 4 H 0.033 0.967 5 C -0.523 4.523 6 H 0.101 0.899 7 C -0.136 4.136 8 N -0.541 5.541 9 Si 0.708 3.292 10 H -0.208 1.208 11 H -0.226 1.226 12 H -0.194 1.194 13 N -0.292 5.292 14 C 0.061 3.939 15 C -0.202 4.202 16 C -0.260 4.260 17 C -0.029 4.029 18 C -0.116 4.116 19 C -0.126 4.126 20 C -0.148 4.148 21 C -0.115 4.115 22 C -0.169 4.169 23 Br 0.042 6.958 24 H 0.065 0.935 25 H 0.067 0.933 26 H 0.063 0.937 27 H 0.085 0.915 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.138 0.862 31 H 0.077 0.923 32 H 0.100 0.900 33 H 0.079 0.921 34 H 0.064 0.936 35 H 0.085 0.915 36 H 0.095 0.905 37 H 0.163 0.837 38 H 0.143 0.857 39 H 0.143 0.857 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -12.538 10.617 -8.011 18.278 hybrid contribution -1.267 -0.960 0.861 1.807 sum -13.805 9.657 -7.150 18.302 Atomic orbital electron populations 1.21926 0.98222 1.00477 1.00748 1.22235 0.92931 1.00909 1.01835 1.19718 0.96908 0.88651 0.86786 0.96679 1.21056 0.88967 1.36442 1.05820 0.89944 1.24947 0.94654 0.96203 0.97751 1.69880 1.08623 1.46061 1.29521 0.87033 0.80778 0.79811 0.81604 1.20785 1.22622 1.19361 1.60804 1.41136 0.99961 1.27339 1.19711 0.94620 0.90397 0.89133 1.22202 0.96422 0.99440 1.02176 1.23025 0.97624 1.04295 1.01011 1.19964 0.94687 0.91518 0.96713 1.21267 0.98055 1.01573 0.90670 1.21325 0.98225 0.94869 0.98175 1.21054 1.01586 0.94671 0.97522 1.20966 0.99838 0.99851 0.90892 1.21579 1.08883 0.94895 0.91524 1.96461 1.96419 1.71132 1.31794 0.93507 0.93295 0.93720 0.91494 0.92759 0.92863 0.86232 0.92346 0.90037 0.92142 0.93613 0.91525 0.90480 0.83661 0.85740 0.85749 0.85546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.61 9.68 37.16 0.36 -2.25 16 2 C -0.14 -2.92 4.93 -26.73 -0.13 -3.05 16 3 C 0.19 4.16 0.85 -68.86 -0.06 4.10 16 4 H 0.02 0.37 4.19 -51.93 -0.22 0.15 16 5 C -0.48 -13.07 7.53 -34.44 -0.26 -13.33 16 6 H 0.08 2.49 8.06 -52.49 -0.42 2.07 16 7 C 0.07 1.84 5.45 -17.82 -0.10 1.74 16 8 N -0.90 -27.33 13.96 55.43 0.77 -26.55 16 9 Si 0.88 21.64 24.41 -169.99 -4.15 17.49 16 10 H -0.28 -6.79 6.83 56.52 0.39 -6.41 16 11 H -0.30 -7.49 7.11 56.52 0.40 -7.08 16 12 H -0.27 -6.33 6.53 56.52 0.37 -5.96 16 13 N -0.66 -12.68 4.77 -95.41 -0.46 -13.14 16 14 C 0.15 2.70 0.66 -132.75 -0.09 2.62 16 15 C -0.14 -2.85 7.32 37.16 0.27 -2.58 16 16 C -0.20 -3.29 8.13 37.15 0.30 -2.99 16 17 C -0.03 -0.42 4.78 -104.60 -0.50 -0.92 16 18 C -0.10 -1.40 9.18 -39.59 -0.36 -1.76 16 19 C -0.11 -1.28 10.05 -39.58 -0.40 -1.68 16 20 C -0.13 -1.43 10.05 -39.59 -0.40 -1.83 16 21 C -0.10 -1.16 9.79 -39.56 -0.39 -1.55 16 22 C -0.09 -1.28 5.95 -39.52 -0.24 -1.51 16 23 Br -0.04 -0.61 26.56 -68.01 -1.81 -2.42 16 24 H 0.05 0.79 8.14 -51.92 -0.42 0.36 16 25 H 0.05 0.73 6.71 -51.93 -0.35 0.38 16 26 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 28 H 0.05 1.22 3.21 -51.93 -0.17 1.06 16 29 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 30 H 0.32 5.50 5.73 -39.29 -0.23 5.27 16 31 H 0.06 1.02 4.57 -51.93 -0.24 0.78 16 32 H 0.08 1.82 5.92 -51.93 -0.31 1.51 16 33 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 34 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.07 1.19 6.18 -51.93 -0.32 0.87 16 36 H 0.08 1.18 4.41 -51.93 -0.23 0.95 16 37 H 0.15 2.14 6.55 -52.49 -0.34 1.80 16 38 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 39 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 40 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 LS Contribution 313.23 15.07 4.72 4.72 Total: -1.00 -29.14 313.23 -8.28 -37.42 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: -5.39 Total: 7.46 kcal Atomic # 6 Polarization: -23.00 SS G_CDS: -1.98 Total: -24.99 kcal Atomic # 7 Polarization: -40.01 SS G_CDS: 0.32 Total: -39.69 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.15 Total: 17.49 kcal Atomic # 35 Polarization: -0.61 SS G_CDS: -1.81 Total: -2.42 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -29.14 -8.28 -37.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255154465.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.794 kcal (2) G-P(sol) polarization free energy of solvation -29.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.424 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds