Wall clock time and date at job start Tue Mar 31 2020 14:21:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47088 * 2 1 4 4 H 1.08996 * 109.47321 * 305.59589 * 3 2 1 5 5 C 1.50698 * 109.46838 * 185.59932 * 3 2 1 6 6 H 1.07997 * 120.00280 * 240.00111 * 5 3 2 7 7 C 1.37879 * 120.00300 * 59.99994 * 5 3 2 8 8 N 1.31519 * 119.99646 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 120.00278 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.46871 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.46993 * 120.00522 * 9 7 5 12 12 H 1.48506 * 109.47158 * 240.00296 * 9 7 5 13 13 N 1.46900 * 109.46758 * 65.60291 * 3 2 1 14 14 C 1.46900 * 110.99453 * 218.91089 * 13 3 2 15 15 C 1.53005 * 109.47224 * 304.98133 * 14 13 3 16 16 C 1.53000 * 109.47335 * 64.98508 * 14 13 3 17 17 C 1.50701 * 109.47019 * 184.98288 * 14 13 3 18 18 C 1.38263 * 119.99395 * 359.72755 * 17 14 13 19 19 C 1.38220 * 120.02059 * 179.72545 * 18 17 14 20 20 C 1.38236 * 120.00939 * 0.55042 * 19 18 17 21 21 C 1.38305 * 119.98947 * 359.72099 * 20 19 18 22 22 Br 1.89095 * 120.01092 * 180.02562 * 21 20 19 23 23 C 1.38199 * 119.99802 * 179.97438 * 17 14 13 24 24 H 1.08997 * 109.46991 * 62.59830 * 1 2 3 25 25 H 1.09000 * 109.47212 * 182.59850 * 1 2 3 26 26 H 1.09002 * 109.47171 * 302.60265 * 1 2 3 27 27 H 1.09007 * 109.46913 * 240.00386 * 2 1 3 28 28 H 1.08994 * 109.47355 * 120.00268 * 2 1 3 29 29 H 0.97000 * 119.99690 * 180.02562 * 8 7 5 30 30 H 1.00897 * 111.00188 * 94.96186 * 13 3 2 31 31 H 1.08991 * 109.46855 * 66.56962 * 15 14 13 32 32 H 1.09004 * 109.46728 * 186.56752 * 15 14 13 33 33 H 1.09000 * 109.46901 * 306.57062 * 15 14 13 34 34 H 1.08999 * 109.47088 * 56.36098 * 16 14 13 35 35 H 1.08998 * 109.47143 * 176.36578 * 16 14 13 36 36 H 1.09000 * 109.46658 * 296.36028 * 16 14 13 37 37 H 1.08009 * 119.99082 * 359.97438 * 18 17 14 38 38 H 1.08001 * 119.99689 * 180.26836 * 19 18 17 39 39 H 1.08002 * 120.00889 * 179.75316 * 20 19 18 40 40 H 1.07998 * 120.00320 * 359.97438 * 23 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5972 1.9845 -0.8356 5 6 3.5406 1.4447 -0.1386 6 1 4.1536 1.8865 0.6330 7 6 4.1311 0.8827 -1.2506 8 7 3.3846 0.3450 -2.1905 9 14 5.9911 0.8860 -1.4228 10 1 6.5966 1.5469 -0.2388 11 1 6.4823 -0.5124 -1.5138 12 1 6.3731 1.6258 -2.6525 13 7 1.6638 2.0948 1.2613 14 6 1.2633 3.4897 1.0335 15 6 2.3838 4.2287 0.2992 16 6 -0.0103 3.5228 0.1862 17 6 1.0030 4.1603 2.3578 18 6 1.1514 3.4486 3.5339 19 6 0.9184 4.0647 4.7491 20 6 0.5258 5.3895 4.7885 21 6 0.3718 6.1002 3.6121 22 35 -0.1645 7.9127 3.6653 23 6 0.6112 5.4850 2.3963 24 1 -0.3633 0.4729 -0.9123 25 1 -0.3633 -1.0266 0.0466 26 1 -0.3633 0.5537 0.8657 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5138 0.8899 29 1 3.8000 -0.0507 -2.9727 30 1 2.4131 2.0392 1.9347 31 1 2.4930 3.8179 -0.7045 32 1 2.1377 5.2885 0.2332 33 1 3.3189 4.1060 0.8457 34 1 -0.7897 2.9417 0.6791 35 1 -0.3435 4.5542 0.0713 36 1 0.1954 3.0959 -0.7954 37 1 1.4534 2.4120 3.5033 38 1 1.0386 3.5096 5.6677 39 1 0.3399 5.8698 5.7378 40 1 0.4918 6.0398 1.4774 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255157968.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:21:13 Heat of formation + Delta-G solvation = 18.433456 kcal Electronic energy + Delta-G solvation = -20388.159925 eV Core-core repulsion = 17441.575821 eV Total energy + Delta-G solvation = -2946.584104 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 325.074 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.71588 -37.15984 -33.98685 -32.15633 -31.65289 -30.33579 -29.10102 -28.74771 -26.64120 -26.06984 -23.33246 -22.46738 -21.94737 -19.78354 -18.52763 -17.18674 -16.38496 -15.42322 -14.87157 -14.70009 -14.16023 -13.81682 -13.61711 -13.35567 -13.19353 -12.80418 -12.51606 -12.09371 -12.01672 -11.60450 -11.49092 -11.30333 -11.16738 -11.02906 -10.85012 -10.73719 -10.62996 -10.59482 -10.41023 -10.20136 -10.01169 -9.58756 -9.49088 -8.95758 -8.74102 -8.50531 -8.38170 -7.33578 -6.03450 -4.13701 1.25564 1.41691 1.64328 3.23794 3.33156 3.35732 3.76924 4.36972 4.78850 4.92701 5.12719 5.21774 5.27432 5.50153 5.52187 5.59292 5.79789 5.88388 5.98690 6.16243 6.24632 6.29091 6.37512 6.41997 6.49201 6.52658 6.60390 6.69567 6.71071 6.83842 6.94605 7.04148 7.14356 7.17726 7.46570 7.57271 7.75909 8.07224 8.09800 8.31145 8.61702 8.98081 9.52917 10.97926 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.020960 B = 0.003465 C = 0.003297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.552234 B = 8077.723828 C = 8491.397033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.105 4.105 3 C 0.214 3.786 4 H 0.038 0.962 5 C -0.535 4.535 6 H 0.054 0.946 7 C 0.067 3.933 8 N -0.884 5.884 9 Si 0.885 3.115 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.285 1.285 13 N -0.679 5.679 14 C 0.153 3.847 15 C -0.162 4.162 16 C -0.131 4.131 17 C -0.049 4.049 18 C -0.089 4.089 19 C -0.117 4.117 20 C -0.106 4.106 21 C -0.091 4.091 22 Br -0.067 7.067 23 C -0.089 4.089 24 H 0.034 0.966 25 H 0.023 0.977 26 H 0.049 0.951 27 H 0.089 0.911 28 H 0.030 0.970 29 H 0.260 0.740 30 H 0.330 0.670 31 H 0.078 0.922 32 H 0.037 0.963 33 H 0.054 0.946 34 H 0.058 0.942 35 H 0.046 0.954 36 H 0.067 0.933 37 H 0.142 0.858 38 H 0.127 0.873 39 H 0.125 0.875 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.524 11.641 11.366 17.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.144 4.144 3 C 0.106 3.894 4 H 0.056 0.944 5 C -0.575 4.575 6 H 0.072 0.928 7 C -0.135 4.135 8 N -0.523 5.523 9 Si 0.714 3.286 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.211 1.211 13 N -0.310 5.310 14 C 0.060 3.940 15 C -0.221 4.221 16 C -0.188 4.188 17 C -0.051 4.051 18 C -0.107 4.107 19 C -0.136 4.136 20 C -0.126 4.126 21 C -0.170 4.170 22 Br 0.018 6.982 23 C -0.109 4.109 24 H 0.054 0.946 25 H 0.042 0.958 26 H 0.068 0.932 27 H 0.107 0.893 28 H 0.048 0.952 29 H 0.070 0.930 30 H 0.148 0.852 31 H 0.097 0.903 32 H 0.056 0.944 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.065 0.935 36 H 0.085 0.915 37 H 0.160 0.840 38 H 0.145 0.855 39 H 0.143 0.857 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -8.365 11.981 11.185 18.401 hybrid contribution 2.119 -0.003 -0.352 2.148 sum -6.245 11.978 10.833 17.315 Atomic orbital electron populations 1.21733 0.99208 0.98399 1.00207 1.21504 0.91930 0.99424 1.01532 1.19203 0.93139 0.91104 0.85909 0.94426 1.21830 0.92415 1.38003 1.05204 0.92787 1.24897 0.97649 0.95087 0.95866 1.69886 1.34558 1.38507 1.09335 0.86649 0.86329 0.77718 0.77947 1.19953 1.21042 1.21131 1.61137 1.43970 1.11302 1.14541 1.19667 0.95093 0.89658 0.89539 1.22509 0.98378 0.98381 1.02848 1.21886 0.96399 1.00317 1.00202 1.20115 0.96390 0.92598 0.95975 1.21389 0.97059 1.01053 0.91226 1.21172 0.99928 0.94154 0.98381 1.20992 1.00269 0.94725 0.96566 1.21639 1.07993 0.90966 0.96407 1.96651 1.90352 1.11922 1.99248 1.20927 0.98930 0.94822 0.96242 0.94647 0.95789 0.93244 0.89308 0.95155 0.92988 0.85202 0.90314 0.94386 0.92718 0.92304 0.93519 0.91457 0.83985 0.85495 0.85714 0.85351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.72 9.83 37.16 0.37 -2.35 16 2 C -0.11 -2.39 5.45 -26.73 -0.15 -2.54 16 3 C 0.21 4.82 1.21 -68.86 -0.08 4.74 16 4 H 0.04 0.93 5.07 -51.93 -0.26 0.67 16 5 C -0.54 -13.40 7.14 -34.44 -0.25 -13.64 16 6 H 0.05 1.36 7.46 -52.49 -0.39 0.97 16 7 C 0.07 1.75 5.29 -17.82 -0.09 1.66 16 8 N -0.88 -23.95 11.29 55.43 0.63 -23.32 16 9 Si 0.89 20.50 29.54 -169.99 -5.02 15.48 16 10 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 12 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 13 N -0.68 -12.81 4.54 -95.41 -0.43 -13.24 16 14 C 0.15 2.58 0.78 -132.75 -0.10 2.47 16 15 C -0.16 -2.91 7.31 37.16 0.27 -2.64 16 16 C -0.13 -2.14 8.24 37.16 0.31 -1.83 16 17 C -0.05 -0.74 4.77 -104.63 -0.50 -1.24 16 18 C -0.09 -1.25 9.10 -39.58 -0.36 -1.61 16 19 C -0.12 -1.42 10.05 -39.59 -0.40 -1.82 16 20 C -0.11 -1.27 9.79 -39.56 -0.39 -1.66 16 21 C -0.09 -1.18 6.22 -39.52 -0.25 -1.43 16 22 Br -0.07 -0.77 33.70 -68.01 -2.29 -3.06 16 23 C -0.09 -1.25 8.34 -39.56 -0.33 -1.58 16 24 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.05 0.93 7.70 -51.93 -0.40 0.53 16 27 H 0.09 2.29 5.94 -51.92 -0.31 1.98 16 28 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.26 6.79 8.31 -40.82 -0.34 6.46 16 30 H 0.33 6.27 6.59 -39.29 -0.26 6.01 16 31 H 0.08 1.62 6.50 -51.93 -0.34 1.28 16 32 H 0.04 0.59 7.18 -51.93 -0.37 0.22 16 33 H 0.05 1.03 8.02 -51.93 -0.42 0.61 16 34 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.05 0.67 7.27 -51.93 -0.38 0.29 16 36 H 0.07 1.22 6.40 -51.93 -0.33 0.89 16 37 H 0.14 2.02 6.30 -52.48 -0.33 1.69 16 38 H 0.13 1.22 8.06 -52.49 -0.42 0.79 16 39 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 40 H 0.13 1.73 7.04 -52.49 -0.37 1.36 16 LS Contribution 332.39 15.07 5.01 5.01 Total: -1.00 -25.47 332.39 -9.89 -35.36 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: -5.83 Total: 7.25 kcal Atomic # 6 Polarization: -21.52 SS G_CDS: -1.95 Total: -23.47 kcal Atomic # 7 Polarization: -36.76 SS G_CDS: 0.19 Total: -36.57 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Atomic # 35 Polarization: -0.77 SS G_CDS: -2.29 Total: -3.06 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -25.47 -9.89 -35.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255157968.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.797 kcal (2) G-P(sol) polarization free energy of solvation -25.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.364 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds