Wall clock time and date at job start Tue Mar 31 2020 14:21:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47088 * 2 1 4 4 H 1.08996 * 109.47321 * 305.59589 * 3 2 1 5 5 C 1.50698 * 109.46838 * 185.59932 * 3 2 1 6 6 H 1.07997 * 120.00280 * 240.00111 * 5 3 2 7 7 C 1.37879 * 120.00300 * 59.99994 * 5 3 2 8 8 N 1.31519 * 119.99646 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 120.00278 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.46871 * 0.02562 * 9 7 5 11 11 H 1.48499 * 109.46993 * 120.00522 * 9 7 5 12 12 H 1.48506 * 109.47158 * 240.00296 * 9 7 5 13 13 N 1.46900 * 109.46758 * 65.60291 * 3 2 1 14 14 C 1.46900 * 110.99453 * 218.91089 * 13 3 2 15 15 C 1.53005 * 109.47224 * 304.98133 * 14 13 3 16 16 C 1.53000 * 109.47335 * 64.98508 * 14 13 3 17 17 C 1.50701 * 109.47019 * 184.98288 * 14 13 3 18 18 C 1.38263 * 119.99395 * 359.72755 * 17 14 13 19 19 C 1.38220 * 120.02059 * 179.72545 * 18 17 14 20 20 C 1.38236 * 120.00939 * 0.55042 * 19 18 17 21 21 C 1.38305 * 119.98947 * 359.72099 * 20 19 18 22 22 Br 1.89095 * 120.01092 * 180.02562 * 21 20 19 23 23 C 1.38199 * 119.99802 * 179.97438 * 17 14 13 24 24 H 1.08997 * 109.46991 * 62.59830 * 1 2 3 25 25 H 1.09000 * 109.47212 * 182.59850 * 1 2 3 26 26 H 1.09002 * 109.47171 * 302.60265 * 1 2 3 27 27 H 1.09007 * 109.46913 * 240.00386 * 2 1 3 28 28 H 1.08994 * 109.47355 * 120.00268 * 2 1 3 29 29 H 0.97000 * 119.99690 * 180.02562 * 8 7 5 30 30 H 1.00897 * 111.00188 * 94.96186 * 13 3 2 31 31 H 1.08991 * 109.46855 * 66.56962 * 15 14 13 32 32 H 1.09004 * 109.46728 * 186.56752 * 15 14 13 33 33 H 1.09000 * 109.46901 * 306.57062 * 15 14 13 34 34 H 1.08999 * 109.47088 * 56.36098 * 16 14 13 35 35 H 1.08998 * 109.47143 * 176.36578 * 16 14 13 36 36 H 1.09000 * 109.46658 * 296.36028 * 16 14 13 37 37 H 1.08009 * 119.99082 * 359.97438 * 18 17 14 38 38 H 1.08001 * 119.99689 * 180.26836 * 19 18 17 39 39 H 1.08002 * 120.00889 * 179.75316 * 20 19 18 40 40 H 1.07998 * 120.00320 * 359.97438 * 23 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5972 1.9845 -0.8356 5 6 3.5406 1.4447 -0.1386 6 1 4.1536 1.8865 0.6330 7 6 4.1311 0.8827 -1.2506 8 7 3.3846 0.3450 -2.1905 9 14 5.9911 0.8860 -1.4228 10 1 6.5966 1.5469 -0.2388 11 1 6.4823 -0.5124 -1.5138 12 1 6.3731 1.6258 -2.6525 13 7 1.6638 2.0948 1.2613 14 6 1.2633 3.4897 1.0335 15 6 2.3838 4.2287 0.2992 16 6 -0.0103 3.5228 0.1862 17 6 1.0030 4.1603 2.3578 18 6 1.1514 3.4486 3.5339 19 6 0.9184 4.0647 4.7491 20 6 0.5258 5.3895 4.7885 21 6 0.3718 6.1002 3.6121 22 35 -0.1645 7.9127 3.6653 23 6 0.6112 5.4850 2.3963 24 1 -0.3633 0.4729 -0.9123 25 1 -0.3633 -1.0266 0.0466 26 1 -0.3633 0.5537 0.8657 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5138 0.8899 29 1 3.8000 -0.0507 -2.9727 30 1 2.4131 2.0392 1.9347 31 1 2.4930 3.8179 -0.7045 32 1 2.1377 5.2885 0.2332 33 1 3.3189 4.1060 0.8457 34 1 -0.7897 2.9417 0.6791 35 1 -0.3435 4.5542 0.0713 36 1 0.1954 3.0959 -0.7954 37 1 1.4534 2.4120 3.5033 38 1 1.0386 3.5096 5.6677 39 1 0.3399 5.8698 5.7378 40 1 0.4918 6.0398 1.4774 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255157968.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:21:13 Heat of formation + Delta-G solvation = 7.189210 kcal Electronic energy + Delta-G solvation = -20388.647512 eV Core-core repulsion = 17441.575821 eV Total energy + Delta-G solvation = -2947.071691 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 325.074 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.88845 -38.56956 -35.64109 -33.50724 -33.14416 -31.68271 -30.23661 -30.02583 -28.18593 -27.76192 -24.89745 -23.88103 -23.00400 -21.38849 -19.99012 -18.79899 -17.79814 -16.79817 -16.48127 -16.00113 -15.44816 -15.31966 -14.96882 -14.62983 -14.42724 -14.39958 -13.87162 -13.60379 -13.48275 -13.12544 -13.05906 -12.86797 -12.83044 -12.53181 -12.43437 -12.21621 -12.06646 -11.79729 -11.69582 -11.60396 -11.38473 -11.30569 -11.14459 -10.79220 -10.37135 -9.76815 -9.54251 -8.98162 -8.01451 -6.18091 0.23121 0.39766 0.67438 1.37430 1.42092 1.49848 2.43144 2.73506 3.20902 3.56181 3.75667 3.99505 4.21671 4.25514 4.39306 4.44142 4.52424 4.68360 4.76744 4.80608 4.84818 4.88302 4.95958 5.01088 5.03025 5.14106 5.23835 5.29701 5.37261 5.46731 5.50530 5.52794 5.62632 5.64371 5.76071 5.88727 5.94190 6.17800 6.29756 6.48780 6.89062 7.10708 7.51368 8.96885 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.020960 B = 0.003465 C = 0.003297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.552234 B = 8077.723828 C = 8491.397033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.103 4.103 3 C 0.225 3.775 4 H 0.014 0.986 5 C -0.538 4.538 6 H 0.049 0.951 7 C 0.022 3.978 8 N -0.911 5.911 9 Si 0.940 3.060 10 H -0.271 1.271 11 H -0.284 1.284 12 H -0.286 1.286 13 N -0.669 5.669 14 C 0.154 3.846 15 C -0.153 4.153 16 C -0.125 4.125 17 C -0.064 4.064 18 C -0.100 4.100 19 C -0.111 4.111 20 C -0.101 4.101 21 C -0.099 4.099 22 Br -0.053 7.053 23 C -0.095 4.095 24 H 0.029 0.971 25 H 0.039 0.961 26 H 0.059 0.941 27 H 0.057 0.943 28 H 0.025 0.975 29 H 0.259 0.741 30 H 0.330 0.670 31 H 0.045 0.955 32 H 0.058 0.942 33 H 0.041 0.959 34 H 0.059 0.941 35 H 0.067 0.933 36 H 0.043 0.957 37 H 0.137 0.863 38 H 0.155 0.845 39 H 0.149 0.851 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.011 12.753 13.419 20.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.142 4.142 3 C 0.116 3.884 4 H 0.032 0.968 5 C -0.577 4.577 6 H 0.067 0.933 7 C -0.178 4.178 8 N -0.550 5.550 9 Si 0.767 3.233 10 H -0.196 1.196 11 H -0.210 1.210 12 H -0.212 1.212 13 N -0.299 5.299 14 C 0.063 3.937 15 C -0.212 4.212 16 C -0.182 4.182 17 C -0.065 4.065 18 C -0.119 4.119 19 C -0.129 4.129 20 C -0.120 4.120 21 C -0.178 4.178 22 Br 0.032 6.968 23 C -0.115 4.115 24 H 0.048 0.952 25 H 0.058 0.942 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.044 0.956 29 H 0.068 0.932 30 H 0.148 0.852 31 H 0.064 0.936 32 H 0.077 0.923 33 H 0.060 0.940 34 H 0.078 0.922 35 H 0.085 0.915 36 H 0.062 0.938 37 H 0.155 0.845 38 H 0.173 0.827 39 H 0.167 0.833 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -8.854 13.104 13.251 20.633 hybrid contribution 2.241 -0.270 -0.926 2.440 sum -6.613 12.834 12.325 18.983 Atomic orbital electron populations 1.21576 0.96748 0.99547 1.00316 1.21378 0.94112 0.98994 0.99673 1.18923 0.91608 0.91125 0.86726 0.96771 1.22113 0.93856 1.36999 1.04737 0.93252 1.25527 1.01036 0.95258 0.95933 1.70008 1.35804 1.39498 1.09739 0.85794 0.82337 0.77465 0.77710 1.19571 1.21009 1.21246 1.61050 1.43417 1.12779 1.12620 1.19648 0.94697 0.88365 0.91034 1.22377 0.98343 0.99705 1.00757 1.21819 0.96188 1.01460 0.98736 1.19875 0.98381 0.93243 0.95012 1.21436 0.97654 1.00962 0.91810 1.21450 0.98545 0.94330 0.98596 1.21327 0.98858 0.94637 0.97223 1.21802 1.07761 0.91822 0.96403 1.96668 1.90186 1.10723 1.99220 1.20930 0.99233 0.94400 0.96969 0.95219 0.94186 0.92239 0.92441 0.95598 0.93213 0.85202 0.93587 0.92261 0.94024 0.92186 0.91454 0.93812 0.84542 0.82692 0.83324 0.85181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.86 9.83 71.98 0.71 -4.15 16 2 C -0.10 -4.75 5.45 30.60 0.17 -4.58 16 3 C 0.22 10.36 1.21 44.17 0.05 10.41 16 4 H 0.01 0.74 5.07 -2.39 -0.01 0.73 16 5 C -0.54 -27.46 7.14 25.60 0.18 -27.28 16 6 H 0.05 2.52 7.46 -2.91 -0.02 2.49 16 7 C 0.02 1.17 5.29 84.65 0.45 1.61 16 8 N -0.91 -50.67 11.29 21.45 0.24 -50.43 16 9 Si 0.94 42.67 29.54 68.60 2.03 44.69 16 10 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 11 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 12 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 13 N -0.67 -25.32 4.54 -455.77 -2.07 -27.39 16 14 C 0.15 5.18 0.78 2.78 0.00 5.19 16 15 C -0.15 -5.54 7.31 71.98 0.53 -5.01 16 16 C -0.12 -4.05 8.24 71.98 0.59 -3.46 16 17 C -0.06 -1.84 4.77 -19.87 -0.09 -1.93 16 18 C -0.10 -2.63 9.10 22.27 0.20 -2.43 16 19 C -0.11 -2.33 10.05 22.27 0.22 -2.10 16 20 C -0.10 -2.08 9.79 22.29 0.22 -1.86 16 21 C -0.10 -2.31 6.22 22.31 0.14 -2.17 16 22 Br -0.05 -1.10 33.70 -20.37 -0.69 -1.79 16 23 C -0.10 -2.49 8.34 22.29 0.19 -2.31 16 24 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 25 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.06 2.18 7.70 -2.39 -0.02 2.16 16 27 H 0.06 3.04 5.94 -2.38 -0.01 3.03 16 28 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.26 13.86 8.31 -92.71 -0.77 13.09 16 30 H 0.33 12.55 6.59 -89.70 -0.59 11.96 16 31 H 0.05 1.95 6.50 -2.39 -0.02 1.93 16 32 H 0.06 1.84 7.18 -2.38 -0.02 1.82 16 33 H 0.04 1.58 8.02 -2.39 -0.02 1.56 16 34 H 0.06 1.91 8.14 -2.39 -0.02 1.90 16 35 H 0.07 1.87 7.27 -2.39 -0.02 1.85 16 36 H 0.04 1.62 6.40 -2.39 -0.02 1.60 16 37 H 0.14 3.70 6.30 -2.91 -0.02 3.68 16 38 H 0.16 2.35 8.06 -2.91 -0.02 2.33 16 39 H 0.15 2.35 8.06 -2.91 -0.02 2.33 16 40 H 0.13 3.27 7.04 -2.91 -0.02 3.25 16 Total: -1.00 -54.80 332.39 3.51 -51.29 By element: Atomic # 1 Polarization: 23.26 SS G_CDS: 0.44 Total: 23.70 kcal Atomic # 6 Polarization: -43.63 SS G_CDS: 3.55 Total: -40.08 kcal Atomic # 7 Polarization: -76.00 SS G_CDS: -1.83 Total: -77.82 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.69 kcal Atomic # 35 Polarization: -1.10 SS G_CDS: -0.69 Total: -1.79 kcal Total: -54.80 3.51 -51.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255157968.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.478 kcal (2) G-P(sol) polarization free energy of solvation -54.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.289 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds