Wall clock time and date at job start Tue Mar 31 2020 14:22:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47453 * 2 1 4 4 H 1.09007 * 109.46513 * 305.59090 * 3 2 1 5 5 C 1.50696 * 109.47091 * 185.59478 * 3 2 1 6 6 H 1.08006 * 119.99508 * 239.99359 * 5 3 2 7 7 C 1.37868 * 120.00464 * 59.99725 * 5 3 2 8 8 N 1.31515 * 119.99943 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 120.00369 * 180.02562 * 7 5 3 10 10 H 1.48491 * 109.46903 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.46936 * 119.99929 * 9 7 5 12 12 H 1.48503 * 109.47005 * 240.00013 * 9 7 5 13 13 N 1.46896 * 109.47186 * 65.58765 * 3 2 1 14 14 C 1.46904 * 111.00299 * 210.03910 * 13 3 2 15 15 H 1.09003 * 109.46362 * 37.57815 * 14 13 3 16 16 C 1.53001 * 109.47186 * 277.57993 * 14 13 3 17 17 C 1.52995 * 109.47140 * 157.57792 * 14 13 3 18 18 C 1.50703 * 109.47128 * 295.00277 * 17 14 13 19 19 C 1.38241 * 120.00379 * 264.72463 * 18 17 14 20 20 C 1.38224 * 120.00663 * 179.72443 * 19 18 17 21 21 C 1.38256 * 120.01998 * 0.55488 * 20 19 18 22 22 C 1.38199 * 120.01102 * 359.72125 * 21 20 19 23 23 C 1.38301 * 120.00534 * 85.00411 * 18 17 14 24 24 Br 1.89098 * 120.00863 * 359.97438 * 23 18 17 25 25 H 1.09000 * 109.47310 * 294.36419 * 1 2 3 26 26 H 1.09000 * 109.46629 * 54.35978 * 1 2 3 27 27 H 1.08993 * 109.47371 * 174.36027 * 1 2 3 28 28 H 1.08997 * 109.46931 * 239.99195 * 2 1 3 29 29 H 1.09005 * 109.46738 * 119.99688 * 2 1 3 30 30 H 0.97004 * 120.00587 * 179.97438 * 8 7 5 31 31 H 1.00908 * 110.99765 * 86.08953 * 13 3 2 32 32 H 1.09007 * 109.46575 * 59.99964 * 16 14 13 33 33 H 1.08999 * 109.47156 * 299.99969 * 16 14 13 34 34 H 1.09000 * 109.47059 * 179.97438 * 16 14 13 35 35 H 1.09002 * 109.47089 * 55.00696 * 17 14 13 36 36 H 1.09007 * 109.47101 * 175.00438 * 17 14 13 37 37 H 1.08002 * 119.99724 * 359.97438 * 19 18 17 38 38 H 1.08002 * 119.98632 * 180.30106 * 20 19 18 39 39 H 1.07996 * 119.99537 * 179.75199 * 21 20 19 40 40 H 1.07996 * 120.00300 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5973 1.9844 -0.8358 5 6 3.5407 1.4446 -0.1385 6 1 4.1535 1.8866 0.6332 7 6 4.1312 0.8825 -1.2503 8 7 3.3850 0.3440 -2.1898 9 14 5.9914 0.8846 -1.4216 10 1 6.5967 1.5457 -0.2378 11 1 6.4816 -0.5142 -1.5127 12 1 6.3744 1.6244 -2.6510 13 7 1.6637 2.0950 1.2611 14 6 1.4668 3.5380 1.0690 15 1 0.9945 3.7147 0.1026 16 6 2.8215 4.2478 1.1121 17 6 0.5698 4.0830 2.1822 18 6 -0.8036 3.4739 2.0642 19 6 -1.8031 4.1483 1.3880 20 6 -3.0612 3.5872 1.2748 21 6 -3.3238 2.3565 1.8475 22 6 -2.3268 1.6842 2.5286 23 6 -1.0658 2.2428 2.6372 24 35 0.2990 1.3231 3.5685 25 1 -0.3634 0.4239 0.9361 26 1 -0.3632 0.5988 -0.8352 27 1 -0.3634 -1.0226 -0.1010 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 3.8004 -0.0512 -2.9723 31 1 2.3494 1.9161 1.9795 32 1 3.4604 3.8595 0.3189 33 1 3.2937 4.0710 2.0785 34 1 2.6754 5.3185 0.9692 35 1 0.9983 3.8281 3.1516 36 1 0.4957 5.1667 2.0914 37 1 -1.5998 5.1120 0.9447 38 1 -3.8405 4.1122 0.7423 39 1 -4.3081 1.9203 1.7622 40 1 -2.5322 0.7231 2.9762 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255159512.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:33 Heat of formation + Delta-G solvation = 17.496151 kcal Electronic energy + Delta-G solvation = -20740.599781 eV Core-core repulsion = 17793.975032 eV Total energy + Delta-G solvation = -2946.624749 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 325.074 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.23555 -36.81120 -34.01090 -31.93996 -31.71771 -30.97766 -28.99307 -28.35655 -26.21082 -25.65721 -22.61124 -22.20762 -21.35382 -19.90280 -19.38659 -16.58772 -16.33265 -15.41935 -14.95686 -14.70281 -14.16320 -13.79977 -13.59621 -13.24076 -12.90428 -12.74334 -12.37116 -12.18380 -11.79572 -11.63915 -11.41625 -11.23949 -11.04738 -10.86876 -10.68785 -10.67285 -10.58145 -10.32721 -10.18154 -10.00825 -9.47773 -9.36869 -9.23159 -8.88334 -8.56361 -8.29759 -8.16415 -6.94380 -5.92042 -4.04402 1.43672 1.55663 2.24902 3.27935 3.36983 3.39471 3.89649 4.43562 4.95984 5.04551 5.14440 5.28927 5.38120 5.49720 5.61346 5.72532 5.85076 5.91783 6.07317 6.13194 6.22358 6.30321 6.48182 6.50141 6.55143 6.60805 6.63907 6.67663 6.83490 6.88568 7.03473 7.11240 7.28119 7.32834 7.59886 7.71715 7.87230 8.22114 8.27666 8.46775 8.81364 9.11528 9.62189 11.06752 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.017799 B = 0.005293 C = 0.005222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.781446 B = 5288.451552 C = 5361.035613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.099 4.099 3 C 0.218 3.782 4 H 0.026 0.974 5 C -0.536 4.536 6 H 0.055 0.945 7 C 0.066 3.934 8 N -0.885 5.885 9 Si 0.883 3.117 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.286 1.286 13 N -0.671 5.671 14 C 0.099 3.901 15 H 0.067 0.933 16 C -0.179 4.179 17 C -0.083 4.083 18 C -0.030 4.030 19 C -0.121 4.121 20 C -0.113 4.113 21 C -0.128 4.128 22 C -0.097 4.097 23 C -0.053 4.053 24 Br -0.031 7.031 25 H 0.054 0.946 26 H 0.030 0.970 27 H 0.018 0.982 28 H 0.084 0.916 29 H 0.029 0.971 30 H 0.258 0.742 31 H 0.331 0.669 32 H 0.081 0.919 33 H 0.045 0.955 34 H 0.037 0.963 35 H 0.077 0.923 36 H 0.065 0.935 37 H 0.122 0.878 38 H 0.119 0.881 39 H 0.121 0.879 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.025 5.544 10.465 16.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.138 4.138 3 C 0.109 3.891 4 H 0.044 0.956 5 C -0.575 4.575 6 H 0.073 0.927 7 C -0.136 4.136 8 N -0.523 5.523 9 Si 0.711 3.289 10 H -0.200 1.200 11 H -0.211 1.211 12 H -0.212 1.212 13 N -0.301 5.301 14 C -0.013 4.013 15 H 0.086 0.914 16 C -0.238 4.238 17 C -0.121 4.121 18 C -0.032 4.032 19 C -0.140 4.140 20 C -0.131 4.131 21 C -0.147 4.147 22 C -0.117 4.117 23 C -0.133 4.133 24 Br 0.056 6.944 25 H 0.073 0.927 26 H 0.049 0.951 27 H 0.037 0.963 28 H 0.103 0.897 29 H 0.047 0.953 30 H 0.069 0.931 31 H 0.148 0.852 32 H 0.100 0.900 33 H 0.064 0.936 34 H 0.056 0.944 35 H 0.095 0.905 36 H 0.084 0.916 37 H 0.140 0.860 38 H 0.137 0.863 39 H 0.139 0.861 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -11.164 4.935 10.580 16.154 hybrid contribution 1.701 0.416 -0.748 1.904 sum -9.464 5.351 9.832 14.658 Atomic orbital electron populations 1.21745 0.99257 0.97824 1.00650 1.21410 0.91878 0.99352 1.01159 1.19141 0.92584 0.91221 0.86105 0.95628 1.21961 0.92941 1.37595 1.05004 0.92651 1.24931 0.97423 0.95245 0.96000 1.69901 1.34417 1.38677 1.09337 0.86691 0.86687 0.77648 0.77835 1.19993 1.21128 1.21249 1.61458 1.51305 1.06616 1.10717 1.21351 0.93189 0.90396 0.96319 0.91437 1.22598 0.99439 0.99176 1.02607 1.20925 0.91429 0.98529 1.01226 1.19712 0.95703 0.93003 0.94780 1.21003 0.92859 1.00255 0.99856 1.21106 0.96866 0.95811 0.99345 1.20994 0.98947 0.95592 0.99166 1.21044 0.91852 0.99647 0.99207 1.21622 0.93167 0.95914 1.02624 1.96615 1.51117 1.75119 1.71563 0.92680 0.95090 0.96263 0.89733 0.95253 0.93145 0.85160 0.90049 0.93629 0.94368 0.90467 0.91600 0.85977 0.86271 0.86079 0.85768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.91 9.74 37.16 0.36 -2.55 16 2 C -0.10 -2.37 5.45 -26.73 -0.15 -2.52 16 3 C 0.22 5.18 1.97 -68.87 -0.14 5.04 16 4 H 0.03 0.70 7.37 -51.93 -0.38 0.31 16 5 C -0.54 -13.90 6.92 -34.45 -0.24 -14.14 16 6 H 0.06 1.43 6.98 -52.48 -0.37 1.06 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.91 11.29 55.43 0.63 -24.28 16 9 Si 0.88 21.03 29.54 -169.99 -5.02 16.01 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 12 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 13 N -0.67 -13.12 2.61 -100.95 -0.26 -13.39 16 14 C 0.10 1.74 2.56 -67.71 -0.17 1.56 16 15 H 0.07 1.31 7.44 -51.93 -0.39 0.93 16 16 C -0.18 -3.09 8.73 37.16 0.32 -2.77 16 17 C -0.08 -1.22 4.69 -27.88 -0.13 -1.35 16 18 C -0.03 -0.45 5.02 -104.60 -0.53 -0.97 16 19 C -0.12 -1.61 9.68 -39.59 -0.38 -1.99 16 20 C -0.11 -1.37 10.05 -39.58 -0.40 -1.77 16 21 C -0.13 -1.57 10.05 -39.59 -0.40 -1.97 16 22 C -0.10 -1.34 9.62 -39.56 -0.38 -1.72 16 23 C -0.05 -0.81 4.75 -39.52 -0.19 -1.00 16 24 Br -0.03 -0.47 27.91 -68.01 -1.90 -2.37 16 25 H 0.05 1.08 5.72 -51.93 -0.30 0.79 16 26 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.08 2.29 5.94 -51.93 -0.31 1.98 16 29 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.26 7.00 8.31 -40.82 -0.34 6.67 16 31 H 0.33 6.65 7.23 -39.29 -0.28 6.37 16 32 H 0.08 1.66 6.17 -51.93 -0.32 1.34 16 33 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.08 1.13 6.89 -51.93 -0.36 0.77 16 36 H 0.07 0.85 8.05 -51.93 -0.42 0.43 16 37 H 0.12 1.41 8.06 -52.49 -0.42 0.98 16 38 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 39 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 40 H 0.12 1.54 8.06 -52.49 -0.42 1.12 16 LS Contribution 330.22 15.07 4.98 4.98 Total: -1.00 -27.16 330.22 -10.15 -37.30 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: -6.06 Total: 6.20 kcal Atomic # 6 Polarization: -21.95 SS G_CDS: -2.50 Total: -24.45 kcal Atomic # 7 Polarization: -38.03 SS G_CDS: 0.36 Total: -37.67 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Atomic # 35 Polarization: -0.47 SS G_CDS: -1.90 Total: -2.37 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -27.16 -10.15 -37.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255159512.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.800 kcal (2) G-P(sol) polarization free energy of solvation -27.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.304 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds