Wall clock time and date at job start Tue Mar 31 2020 14:22:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47453 * 2 1 4 4 H 1.09007 * 109.46513 * 305.59090 * 3 2 1 5 5 C 1.50696 * 109.47091 * 185.59478 * 3 2 1 6 6 H 1.08006 * 119.99508 * 239.99359 * 5 3 2 7 7 C 1.37868 * 120.00464 * 59.99725 * 5 3 2 8 8 N 1.31515 * 119.99943 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 120.00369 * 180.02562 * 7 5 3 10 10 H 1.48491 * 109.46903 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.46936 * 119.99929 * 9 7 5 12 12 H 1.48503 * 109.47005 * 240.00013 * 9 7 5 13 13 N 1.46896 * 109.47186 * 65.58765 * 3 2 1 14 14 C 1.46904 * 111.00299 * 210.03910 * 13 3 2 15 15 H 1.09003 * 109.46362 * 37.57815 * 14 13 3 16 16 C 1.53001 * 109.47186 * 277.57993 * 14 13 3 17 17 C 1.52995 * 109.47140 * 157.57792 * 14 13 3 18 18 C 1.50703 * 109.47128 * 295.00277 * 17 14 13 19 19 C 1.38241 * 120.00379 * 264.72463 * 18 17 14 20 20 C 1.38224 * 120.00663 * 179.72443 * 19 18 17 21 21 C 1.38256 * 120.01998 * 0.55488 * 20 19 18 22 22 C 1.38199 * 120.01102 * 359.72125 * 21 20 19 23 23 C 1.38301 * 120.00534 * 85.00411 * 18 17 14 24 24 Br 1.89098 * 120.00863 * 359.97438 * 23 18 17 25 25 H 1.09000 * 109.47310 * 294.36419 * 1 2 3 26 26 H 1.09000 * 109.46629 * 54.35978 * 1 2 3 27 27 H 1.08993 * 109.47371 * 174.36027 * 1 2 3 28 28 H 1.08997 * 109.46931 * 239.99195 * 2 1 3 29 29 H 1.09005 * 109.46738 * 119.99688 * 2 1 3 30 30 H 0.97004 * 120.00587 * 179.97438 * 8 7 5 31 31 H 1.00908 * 110.99765 * 86.08953 * 13 3 2 32 32 H 1.09007 * 109.46575 * 59.99964 * 16 14 13 33 33 H 1.08999 * 109.47156 * 299.99969 * 16 14 13 34 34 H 1.09000 * 109.47059 * 179.97438 * 16 14 13 35 35 H 1.09002 * 109.47089 * 55.00696 * 17 14 13 36 36 H 1.09007 * 109.47101 * 175.00438 * 17 14 13 37 37 H 1.08002 * 119.99724 * 359.97438 * 19 18 17 38 38 H 1.08002 * 119.98632 * 180.30106 * 20 19 18 39 39 H 1.07996 * 119.99537 * 179.75199 * 21 20 19 40 40 H 1.07996 * 120.00300 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5973 1.9844 -0.8358 5 6 3.5407 1.4446 -0.1385 6 1 4.1535 1.8866 0.6332 7 6 4.1312 0.8825 -1.2503 8 7 3.3850 0.3440 -2.1898 9 14 5.9914 0.8846 -1.4216 10 1 6.5967 1.5457 -0.2378 11 1 6.4816 -0.5142 -1.5127 12 1 6.3744 1.6244 -2.6510 13 7 1.6637 2.0950 1.2611 14 6 1.4668 3.5380 1.0690 15 1 0.9945 3.7147 0.1026 16 6 2.8215 4.2478 1.1121 17 6 0.5698 4.0830 2.1822 18 6 -0.8036 3.4739 2.0642 19 6 -1.8031 4.1483 1.3880 20 6 -3.0612 3.5872 1.2748 21 6 -3.3238 2.3565 1.8475 22 6 -2.3268 1.6842 2.5286 23 6 -1.0658 2.2428 2.6372 24 35 0.2990 1.3231 3.5685 25 1 -0.3634 0.4239 0.9361 26 1 -0.3632 0.5988 -0.8352 27 1 -0.3634 -1.0226 -0.1010 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 3.8004 -0.0512 -2.9723 31 1 2.3494 1.9161 1.9795 32 1 3.4604 3.8595 0.3189 33 1 3.2937 4.0710 2.0785 34 1 2.6754 5.3185 0.9692 35 1 0.9983 3.8281 3.1516 36 1 0.4957 5.1667 2.0914 37 1 -1.5998 5.1120 0.9447 38 1 -3.8405 4.1122 0.7423 39 1 -4.3081 1.9203 1.7622 40 1 -2.5322 0.7231 2.9762 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255159512.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:33 Heat of formation + Delta-G solvation = 5.406714 kcal Electronic energy + Delta-G solvation = -20741.124018 eV Core-core repulsion = 17793.975032 eV Total energy + Delta-G solvation = -2947.148986 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 325.074 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.30956 -38.38490 -35.66568 -33.58498 -33.02887 -32.33106 -30.31194 -29.72167 -27.92102 -27.05468 -24.50697 -23.23874 -22.52155 -21.38000 -21.15486 -18.47182 -17.47899 -16.89473 -16.37100 -16.01128 -15.63709 -15.33565 -15.00837 -14.50736 -14.48338 -14.13685 -13.75371 -13.51021 -13.40655 -13.17402 -13.00864 -12.84633 -12.68043 -12.54301 -12.40098 -11.99659 -11.90140 -11.81553 -11.68616 -11.48099 -11.31074 -11.03587 -10.84850 -10.48889 -10.37469 -9.59484 -9.31900 -8.61779 -7.93769 -6.16706 0.41304 0.53645 1.13730 1.37068 1.40950 1.49520 2.43678 2.87782 3.22026 3.78685 3.96502 4.08991 4.24498 4.35541 4.47024 4.59885 4.61374 4.69479 4.73479 4.84466 4.85378 4.91993 5.02196 5.06406 5.13505 5.18454 5.27597 5.38452 5.48095 5.51190 5.57875 5.62965 5.66258 5.70022 5.76945 5.88916 6.10490 6.23134 6.33388 6.56461 6.99901 7.20557 7.53902 8.98802 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.017799 B = 0.005293 C = 0.005222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.781446 B = 5288.451552 C = 5361.035613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.092 4.092 3 C 0.230 3.770 4 H -0.011 1.011 5 C -0.538 4.538 6 H 0.054 0.946 7 C 0.018 3.982 8 N -0.914 5.914 9 Si 0.942 3.058 10 H -0.269 1.269 11 H -0.285 1.285 12 H -0.286 1.286 13 N -0.655 5.655 14 C 0.099 3.901 15 H 0.046 0.954 16 C -0.172 4.172 17 C -0.072 4.072 18 C -0.052 4.052 19 C -0.128 4.128 20 C -0.113 4.113 21 C -0.127 4.127 22 C -0.111 4.111 23 C -0.071 4.071 24 Br -0.044 7.044 25 H 0.070 0.930 26 H 0.018 0.982 27 H 0.032 0.968 28 H 0.052 0.948 29 H 0.024 0.976 30 H 0.257 0.743 31 H 0.329 0.671 32 H 0.045 0.955 33 H 0.053 0.947 34 H 0.062 0.938 35 H 0.078 0.922 36 H 0.088 0.912 37 H 0.139 0.861 38 H 0.148 0.852 39 H 0.149 0.851 40 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.044 6.548 11.337 17.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.131 4.131 3 C 0.121 3.879 4 H 0.007 0.993 5 C -0.578 4.578 6 H 0.073 0.927 7 C -0.182 4.182 8 N -0.554 5.554 9 Si 0.769 3.231 10 H -0.194 1.194 11 H -0.212 1.212 12 H -0.212 1.212 13 N -0.285 5.285 14 C -0.012 4.012 15 H 0.064 0.936 16 C -0.231 4.231 17 C -0.110 4.110 18 C -0.054 4.054 19 C -0.147 4.147 20 C -0.131 4.131 21 C -0.145 4.145 22 C -0.131 4.131 23 C -0.151 4.151 24 Br 0.043 6.957 25 H 0.089 0.911 26 H 0.037 0.963 27 H 0.051 0.949 28 H 0.070 0.930 29 H 0.043 0.957 30 H 0.067 0.933 31 H 0.147 0.853 32 H 0.064 0.936 33 H 0.072 0.928 34 H 0.081 0.919 35 H 0.096 0.904 36 H 0.107 0.893 37 H 0.156 0.844 38 H 0.166 0.834 39 H 0.166 0.834 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -12.186 5.953 11.470 17.762 hybrid contribution 1.930 0.152 -1.020 2.188 sum -10.256 6.105 10.450 15.864 Atomic orbital electron populations 1.21604 0.97092 0.98575 1.00906 1.21237 0.93755 0.98884 0.99216 1.18837 0.91231 0.91097 0.86712 0.99318 1.22255 0.94173 1.36645 1.04687 0.92746 1.25616 1.01199 0.95327 0.96011 1.70037 1.35871 1.39686 1.09795 0.85762 0.82201 0.77398 0.77740 1.19360 1.21152 1.21240 1.61420 1.50546 1.08099 1.08425 1.21372 0.93962 0.89137 0.96703 0.93577 1.22473 0.98442 1.00546 1.01640 1.20786 0.90858 0.99689 0.99642 1.19827 0.96125 0.93433 0.96013 1.21297 0.93076 1.00954 0.99375 1.21494 0.97109 0.95797 0.98741 1.21372 0.99757 0.95486 0.97913 1.21279 0.91782 1.00306 0.99712 1.21759 0.93513 0.96326 1.03462 1.96591 1.51741 1.75414 1.71997 0.91122 0.96304 0.94920 0.92994 0.95669 0.93348 0.85279 0.93577 0.92762 0.91862 0.90394 0.89342 0.84366 0.83427 0.83354 0.84947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.25 9.74 71.98 0.70 -4.55 16 2 C -0.09 -4.48 5.45 30.59 0.17 -4.31 16 3 C 0.23 11.21 1.97 44.17 0.09 11.30 16 4 H -0.01 -0.62 7.37 -2.38 -0.02 -0.64 16 5 C -0.54 -28.39 6.92 25.60 0.18 -28.21 16 6 H 0.05 2.83 6.98 -2.91 -0.02 2.81 16 7 C 0.02 0.96 5.29 84.65 0.45 1.41 16 8 N -0.91 -52.74 11.29 21.44 0.24 -52.50 16 9 Si 0.94 43.69 29.54 68.60 2.03 45.72 16 10 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 11 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 12 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 13 N -0.66 -25.69 2.61 -473.31 -1.24 -26.93 16 14 C 0.10 3.44 2.56 44.91 0.11 3.56 16 15 H 0.05 1.80 7.44 -2.39 -0.02 1.79 16 16 C -0.17 -5.80 8.73 71.98 0.63 -5.17 16 17 C -0.07 -1.99 4.69 29.85 0.14 -1.85 16 18 C -0.05 -1.46 5.02 -19.85 -0.10 -1.56 16 19 C -0.13 -3.12 9.68 22.27 0.22 -2.90 16 20 C -0.11 -2.40 10.05 22.27 0.22 -2.18 16 21 C -0.13 -2.74 10.05 22.26 0.22 -2.52 16 22 C -0.11 -2.84 9.62 22.29 0.21 -2.62 16 23 C -0.07 -2.05 4.75 22.31 0.11 -1.95 16 24 Br -0.04 -1.31 27.91 -20.37 -0.57 -1.88 16 25 H 0.07 2.74 5.72 -2.39 -0.01 2.73 16 26 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.05 2.88 5.94 -2.39 -0.01 2.87 16 29 H 0.02 1.21 8.14 -2.38 -0.02 1.19 16 30 H 0.26 14.26 8.31 -92.71 -0.77 13.49 16 31 H 0.33 13.21 7.23 -89.69 -0.65 12.56 16 32 H 0.05 1.88 6.17 -2.38 -0.01 1.86 16 33 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.08 2.15 6.89 -2.39 -0.02 2.14 16 36 H 0.09 2.04 8.05 -2.38 -0.02 2.02 16 37 H 0.14 2.81 8.06 -2.91 -0.02 2.79 16 38 H 0.15 2.25 8.06 -2.91 -0.02 2.23 16 39 H 0.15 2.34 8.06 -2.91 -0.02 2.32 16 40 H 0.13 3.06 8.06 -2.91 -0.02 3.04 16 Total: -1.00 -59.05 330.22 4.19 -54.87 By element: Atomic # 1 Polarization: 21.91 SS G_CDS: 0.38 Total: 22.29 kcal Atomic # 6 Polarization: -44.91 SS G_CDS: 3.35 Total: -41.57 kcal Atomic # 7 Polarization: -78.43 SS G_CDS: -1.00 Total: -79.43 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Atomic # 35 Polarization: -1.31 SS G_CDS: -0.57 Total: -1.88 kcal Total: -59.05 4.19 -54.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255159512.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.274 kcal (2) G-P(sol) polarization free energy of solvation -59.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds