Wall clock time and date at job start Tue Mar 31 2020 14:22:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47100 * 2 1 4 4 H 1.08997 * 109.47306 * 54.46392 * 3 2 1 5 5 C 1.50700 * 109.46872 * 174.46693 * 3 2 1 6 6 H 1.07996 * 119.99952 * 120.00427 * 5 3 2 7 7 C 1.37877 * 119.99831 * 299.99384 * 5 3 2 8 8 N 1.31516 * 120.00114 * 0.02562 * 7 5 3 9 9 Si 1.86805 * 119.99839 * 180.02562 * 7 5 3 10 10 H 1.48493 * 109.47121 * 60.00030 * 9 7 5 11 11 H 1.48500 * 109.46755 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.46994 * 299.99730 * 9 7 5 13 13 N 1.46898 * 109.47000 * 294.46255 * 3 2 1 14 14 C 1.46891 * 111.00054 * 153.20590 * 13 3 2 15 15 H 1.08997 * 109.47449 * 33.06212 * 14 13 3 16 16 C 1.53004 * 109.47327 * 273.05973 * 14 13 3 17 17 C 1.53003 * 109.47461 * 153.05906 * 14 13 3 18 18 C 1.50703 * 109.46880 * 295.00456 * 17 14 13 19 19 C 1.38240 * 120.00223 * 264.72160 * 18 17 14 20 20 C 1.38225 * 120.01150 * 179.72215 * 19 18 17 21 21 C 1.38266 * 120.01501 * 0.55453 * 20 19 18 22 22 C 1.38198 * 120.00984 * 359.72110 * 21 20 19 23 23 C 1.38298 * 120.00809 * 84.99640 * 18 17 14 24 24 Br 1.89100 * 120.01178 * 359.97438 * 23 18 17 25 25 H 1.08999 * 109.47369 * 60.30048 * 1 2 3 26 26 H 1.09002 * 109.47054 * 180.30588 * 1 2 3 27 27 H 1.09005 * 109.46933 * 300.29855 * 1 2 3 28 28 H 1.09000 * 109.47668 * 120.00043 * 2 1 3 29 29 H 1.09000 * 109.47186 * 240.00378 * 2 1 3 30 30 H 0.96996 * 120.00065 * 180.02562 * 8 7 5 31 31 H 1.00903 * 111.00380 * 29.25288 * 13 3 2 32 32 H 1.08995 * 109.46810 * 64.67288 * 16 14 13 33 33 H 1.09006 * 109.47065 * 184.67122 * 16 14 13 34 34 H 1.09000 * 109.47002 * 304.66602 * 16 14 13 35 35 H 1.08999 * 109.47194 * 54.99802 * 17 14 13 36 36 H 1.09004 * 109.47631 * 175.00269 * 17 14 13 37 37 H 1.08008 * 119.99633 * 359.97438 * 19 18 17 38 38 H 1.07997 * 119.99251 * 180.25100 * 20 19 18 39 39 H 1.07994 * 119.99094 * 179.74434 * 21 20 19 40 40 H 1.07998 * 120.00052 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5980 1.9842 0.8362 5 6 3.5408 1.4447 0.1370 6 1 4.1528 1.8869 -0.6351 7 6 4.1324 0.8823 1.2482 8 7 3.3870 0.3435 2.1883 9 14 5.9926 0.8856 1.4184 10 1 6.4872 2.2857 1.4186 11 1 6.3742 0.2250 2.6924 12 1 6.5952 0.1479 0.2791 13 7 1.6625 2.0953 -1.2606 14 6 1.5407 3.5486 -1.0850 15 1 2.2620 3.8865 -0.3410 16 6 0.1251 3.8886 -0.6143 17 6 1.8169 4.2483 -2.4174 18 6 3.2501 4.0141 -2.8201 19 6 4.2173 4.9521 -2.5107 20 6 5.5328 4.7348 -2.8750 21 6 5.8801 3.5844 -3.5589 22 6 4.9129 2.6488 -3.8736 23 6 3.5971 2.8633 -3.5042 24 35 2.2734 1.5830 -3.9339 25 1 -0.3634 0.5091 -0.8926 26 1 -0.3633 -1.0277 0.0055 27 1 -0.3633 0.5185 0.8873 28 1 1.8934 -0.5138 0.8899 29 1 1.8934 -0.5138 -0.8900 30 1 3.8032 -0.0518 2.9702 31 1 0.8093 1.7030 -1.6298 32 1 -0.0424 3.4588 0.3732 33 1 0.0093 4.9714 -0.5637 34 1 -0.5999 3.4782 -1.3172 35 1 1.1540 3.8461 -3.1834 36 1 1.6402 5.3185 -2.3093 37 1 3.9456 5.8532 -1.9808 38 1 6.2888 5.4660 -2.6296 39 1 6.9074 3.4170 -3.8469 40 1 5.1843 1.7505 -4.4082 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255159514.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:38 Heat of formation + Delta-G solvation = 20.382154 kcal Electronic energy + Delta-G solvation = -20828.033247 eV Core-core repulsion = 17881.533644 eV Total energy + Delta-G solvation = -2946.499602 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 325.074 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.07163 -36.88503 -34.02936 -31.89152 -31.59283 -30.90189 -28.83931 -28.45881 -26.05297 -25.88383 -22.74454 -22.05700 -21.28643 -19.80809 -19.45974 -16.35391 -16.10484 -15.35608 -14.85690 -14.64387 -14.17234 -13.94488 -13.46773 -13.13286 -12.98889 -12.81585 -12.49554 -12.27306 -11.83154 -11.68599 -11.58088 -11.27745 -10.95244 -10.80342 -10.70939 -10.61859 -10.55064 -10.32446 -10.14188 -9.82104 -9.58254 -9.53872 -9.20612 -8.91108 -8.39051 -8.23405 -8.02321 -6.82509 -5.85475 -3.87350 1.62112 1.73605 2.40788 3.39090 3.42819 3.47199 4.07203 4.53678 5.07096 5.18552 5.29868 5.35837 5.44816 5.59659 5.63982 5.77970 5.83225 5.98387 6.00922 6.12089 6.21292 6.23863 6.24667 6.32275 6.41725 6.48087 6.61552 6.67124 6.74837 6.78861 6.92071 6.94890 7.20780 7.25912 7.31707 7.64613 7.90474 8.06167 8.47420 8.55433 8.93798 9.21615 9.77002 11.19751 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.011134 B = 0.007952 C = 0.006229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2514.285579 B = 3520.102074 C = 4494.316309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.124 4.124 3 C 0.222 3.778 4 H -0.001 1.001 5 C -0.477 4.477 6 H 0.059 0.941 7 C 0.054 3.946 8 N -0.899 5.899 9 Si 0.887 3.113 10 H -0.280 1.280 11 H -0.291 1.291 12 H -0.279 1.279 13 N -0.666 5.666 14 C 0.093 3.907 15 H 0.080 0.920 16 C -0.176 4.176 17 C -0.078 4.078 18 C -0.028 4.028 19 C -0.118 4.118 20 C -0.113 4.113 21 C -0.128 4.128 22 C -0.096 4.096 23 C -0.045 4.045 24 Br -0.037 7.037 25 H 0.034 0.966 26 H 0.033 0.967 27 H 0.040 0.960 28 H 0.096 0.904 29 H 0.040 0.960 30 H 0.257 0.743 31 H 0.319 0.681 32 H 0.055 0.945 33 H 0.048 0.952 34 H 0.048 0.952 35 H 0.075 0.925 36 H 0.064 0.936 37 H 0.121 0.879 38 H 0.118 0.882 39 H 0.120 0.880 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.468 6.744 -12.101 14.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.163 4.163 3 C 0.114 3.886 4 H 0.016 0.984 5 C -0.516 4.516 6 H 0.078 0.922 7 C -0.145 4.145 8 N -0.540 5.540 9 Si 0.716 3.284 10 H -0.206 1.206 11 H -0.217 1.217 12 H -0.205 1.205 13 N -0.298 5.298 14 C -0.018 4.018 15 H 0.099 0.901 16 C -0.235 4.235 17 C -0.116 4.116 18 C -0.030 4.030 19 C -0.137 4.137 20 C -0.132 4.132 21 C -0.147 4.147 22 C -0.116 4.116 23 C -0.125 4.125 24 Br 0.050 6.950 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.059 0.941 28 H 0.114 0.886 29 H 0.059 0.941 30 H 0.067 0.933 31 H 0.137 0.863 32 H 0.074 0.926 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.093 0.907 36 H 0.083 0.917 37 H 0.139 0.861 38 H 0.136 0.864 39 H 0.138 0.862 40 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -2.300 6.175 -12.320 13.972 hybrid contribution 0.622 0.220 1.024 1.218 sum -1.678 6.396 -11.296 13.089 Atomic orbital electron populations 1.21873 0.99917 0.99280 0.99486 1.21748 0.90907 1.00756 1.02856 1.19103 0.95117 0.89700 0.84660 0.98388 1.21163 0.91374 1.35387 1.03667 0.92234 1.24910 0.97431 0.96080 0.96112 1.69862 1.34409 1.40094 1.09656 0.86735 0.86759 0.78005 0.76941 1.20603 1.21717 1.20452 1.61279 1.36883 1.00523 1.31090 1.21417 0.94715 0.91184 0.94505 0.90133 1.22510 0.98732 1.00765 1.01510 1.20841 0.92035 0.99649 0.99094 1.19592 0.96388 0.92511 0.94545 1.20945 0.92781 0.99321 1.00672 1.21072 0.96142 0.97552 0.98384 1.20974 0.98803 0.94625 1.00263 1.21010 0.91508 0.99148 0.99981 1.21521 0.93574 0.94502 1.02917 1.96535 1.53105 1.54634 1.90765 0.94713 0.94738 0.94069 0.88556 0.94128 0.93336 0.86266 0.92563 0.93325 0.93278 0.90671 0.91742 0.86111 0.86402 0.86215 0.85870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.88 9.75 37.16 0.36 -2.52 16 2 C -0.12 -2.90 5.35 -26.73 -0.14 -3.04 16 3 C 0.22 5.30 1.82 -68.86 -0.13 5.18 16 4 H 0.00 -0.04 7.30 -51.93 -0.38 -0.42 16 5 C -0.48 -12.87 8.60 -34.44 -0.30 -13.17 16 6 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 7 C 0.05 1.50 5.29 -17.82 -0.09 1.40 16 8 N -0.90 -25.69 11.29 55.43 0.63 -25.07 16 9 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 10 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 12 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 13 N -0.67 -13.13 2.88 -100.96 -0.29 -13.42 16 14 C 0.09 1.65 2.37 -67.71 -0.16 1.49 16 15 H 0.08 1.67 7.68 -51.93 -0.40 1.27 16 16 C -0.18 -2.72 9.17 37.16 0.34 -2.38 16 17 C -0.08 -1.19 4.69 -27.88 -0.13 -1.32 16 18 C -0.03 -0.47 5.02 -104.60 -0.53 -1.00 16 19 C -0.12 -1.81 9.68 -39.59 -0.38 -2.20 16 20 C -0.11 -1.64 10.05 -39.58 -0.40 -2.04 16 21 C -0.13 -1.89 10.05 -39.59 -0.40 -2.29 16 22 C -0.10 -1.56 9.79 -39.56 -0.39 -1.95 16 23 C -0.05 -0.78 5.94 -39.52 -0.23 -1.01 16 24 Br -0.04 -0.60 28.76 -68.01 -1.96 -2.56 16 25 H 0.03 0.61 6.47 -51.93 -0.34 0.27 16 26 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 28 H 0.10 2.56 5.94 -51.93 -0.31 2.26 16 29 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 31 H 0.32 5.99 5.57 -39.29 -0.22 5.77 16 32 H 0.06 0.96 7.65 -51.93 -0.40 0.56 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.05 0.70 8.04 -51.93 -0.42 0.28 16 35 H 0.07 1.11 6.89 -51.93 -0.36 0.75 16 36 H 0.06 0.85 8.05 -51.93 -0.42 0.43 16 37 H 0.12 1.60 8.06 -52.48 -0.42 1.17 16 38 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 39 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 40 H 0.12 1.82 8.06 -52.49 -0.42 1.40 16 LS Contribution 335.87 15.07 5.06 5.06 Total: -1.00 -28.23 335.87 -10.31 -38.55 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: -6.16 Total: 5.36 kcal Atomic # 6 Polarization: -22.27 SS G_CDS: -2.57 Total: -24.84 kcal Atomic # 7 Polarization: -38.82 SS G_CDS: 0.34 Total: -38.49 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Atomic # 35 Polarization: -0.60 SS G_CDS: -1.96 Total: -2.56 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -28.23 -10.31 -38.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255159514.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.927 kcal (2) G-P(sol) polarization free energy of solvation -28.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.545 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds