Wall clock time and date at job start Tue Mar 31 2020 14:22:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47100 * 2 1 4 4 H 1.08997 * 109.47306 * 54.46392 * 3 2 1 5 5 C 1.50700 * 109.46872 * 174.46693 * 3 2 1 6 6 H 1.07996 * 119.99952 * 120.00427 * 5 3 2 7 7 C 1.37877 * 119.99831 * 299.99384 * 5 3 2 8 8 N 1.31516 * 120.00114 * 0.02562 * 7 5 3 9 9 Si 1.86805 * 119.99839 * 180.02562 * 7 5 3 10 10 H 1.48493 * 109.47121 * 60.00030 * 9 7 5 11 11 H 1.48500 * 109.46755 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.46994 * 299.99730 * 9 7 5 13 13 N 1.46898 * 109.47000 * 294.46255 * 3 2 1 14 14 C 1.46891 * 111.00054 * 153.20590 * 13 3 2 15 15 H 1.08997 * 109.47449 * 33.06212 * 14 13 3 16 16 C 1.53004 * 109.47327 * 273.05973 * 14 13 3 17 17 C 1.53003 * 109.47461 * 153.05906 * 14 13 3 18 18 C 1.50703 * 109.46880 * 295.00456 * 17 14 13 19 19 C 1.38240 * 120.00223 * 264.72160 * 18 17 14 20 20 C 1.38225 * 120.01150 * 179.72215 * 19 18 17 21 21 C 1.38266 * 120.01501 * 0.55453 * 20 19 18 22 22 C 1.38198 * 120.00984 * 359.72110 * 21 20 19 23 23 C 1.38298 * 120.00809 * 84.99640 * 18 17 14 24 24 Br 1.89100 * 120.01178 * 359.97438 * 23 18 17 25 25 H 1.08999 * 109.47369 * 60.30048 * 1 2 3 26 26 H 1.09002 * 109.47054 * 180.30588 * 1 2 3 27 27 H 1.09005 * 109.46933 * 300.29855 * 1 2 3 28 28 H 1.09000 * 109.47668 * 120.00043 * 2 1 3 29 29 H 1.09000 * 109.47186 * 240.00378 * 2 1 3 30 30 H 0.96996 * 120.00065 * 180.02562 * 8 7 5 31 31 H 1.00903 * 111.00380 * 29.25288 * 13 3 2 32 32 H 1.08995 * 109.46810 * 64.67288 * 16 14 13 33 33 H 1.09006 * 109.47065 * 184.67122 * 16 14 13 34 34 H 1.09000 * 109.47002 * 304.66602 * 16 14 13 35 35 H 1.08999 * 109.47194 * 54.99802 * 17 14 13 36 36 H 1.09004 * 109.47631 * 175.00269 * 17 14 13 37 37 H 1.08008 * 119.99633 * 359.97438 * 19 18 17 38 38 H 1.07997 * 119.99251 * 180.25100 * 20 19 18 39 39 H 1.07994 * 119.99094 * 179.74434 * 21 20 19 40 40 H 1.07998 * 120.00052 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5980 1.9842 0.8362 5 6 3.5408 1.4447 0.1370 6 1 4.1528 1.8869 -0.6351 7 6 4.1324 0.8823 1.2482 8 7 3.3870 0.3435 2.1883 9 14 5.9926 0.8856 1.4184 10 1 6.4872 2.2857 1.4186 11 1 6.3742 0.2250 2.6924 12 1 6.5952 0.1479 0.2791 13 7 1.6625 2.0953 -1.2606 14 6 1.5407 3.5486 -1.0850 15 1 2.2620 3.8865 -0.3410 16 6 0.1251 3.8886 -0.6143 17 6 1.8169 4.2483 -2.4174 18 6 3.2501 4.0141 -2.8201 19 6 4.2173 4.9521 -2.5107 20 6 5.5328 4.7348 -2.8750 21 6 5.8801 3.5844 -3.5589 22 6 4.9129 2.6488 -3.8736 23 6 3.5971 2.8633 -3.5042 24 35 2.2734 1.5830 -3.9339 25 1 -0.3634 0.5091 -0.8926 26 1 -0.3633 -1.0277 0.0055 27 1 -0.3633 0.5185 0.8873 28 1 1.8934 -0.5138 0.8899 29 1 1.8934 -0.5138 -0.8900 30 1 3.8032 -0.0518 2.9702 31 1 0.8093 1.7030 -1.6298 32 1 -0.0424 3.4588 0.3732 33 1 0.0093 4.9714 -0.5637 34 1 -0.5999 3.4782 -1.3172 35 1 1.1540 3.8461 -3.1834 36 1 1.6402 5.3185 -2.3093 37 1 3.9456 5.8532 -1.9808 38 1 6.2888 5.4660 -2.6296 39 1 6.9074 3.4170 -3.8469 40 1 5.1843 1.7505 -4.4082 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255159514.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:38 Heat of formation + Delta-G solvation = 7.483774 kcal Electronic energy + Delta-G solvation = -20828.592562 eV Core-core repulsion = 17881.533644 eV Total energy + Delta-G solvation = -2947.058918 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 325.074 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.28216 -38.46630 -35.68315 -33.70902 -32.90083 -32.28784 -30.29352 -29.81355 -27.85752 -27.21150 -24.60497 -23.24563 -22.55612 -21.39710 -21.10753 -18.18974 -17.52746 -16.92685 -16.32397 -16.08104 -15.70184 -15.53306 -14.94900 -14.58776 -14.34259 -14.21759 -14.10750 -13.59414 -13.33196 -13.17098 -13.00417 -12.84293 -12.76412 -12.53071 -12.40715 -11.96232 -11.92800 -11.81507 -11.67875 -11.47767 -11.38066 -11.21702 -10.89241 -10.50080 -10.33254 -9.58720 -9.30709 -8.45585 -7.96102 -6.04947 0.42508 0.54576 1.15513 1.39814 1.41002 1.47975 2.47862 2.88211 3.28318 3.76376 3.96949 4.08103 4.21647 4.33054 4.44445 4.54426 4.58984 4.61446 4.63147 4.67907 4.77703 4.83096 4.90902 5.03538 5.08789 5.14196 5.20272 5.29905 5.34303 5.41464 5.48940 5.51713 5.61927 5.68731 5.75200 5.88559 6.02998 6.11477 6.51380 6.73368 7.11135 7.22409 7.63306 9.05456 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.011134 B = 0.007952 C = 0.006229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2514.285579 B = 3520.102074 C = 4494.316309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.119 4.119 3 C 0.234 3.766 4 H -0.035 1.035 5 C -0.480 4.480 6 H 0.046 0.954 7 C 0.009 3.991 8 N -0.923 5.923 9 Si 0.938 3.062 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.278 1.278 13 N -0.658 5.658 14 C 0.093 3.907 15 H 0.046 0.954 16 C -0.168 4.168 17 C -0.069 4.069 18 C -0.049 4.049 19 C -0.128 4.128 20 C -0.118 4.118 21 C -0.132 4.132 22 C -0.115 4.115 23 C -0.068 4.068 24 Br -0.040 7.040 25 H 0.055 0.945 26 H 0.051 0.949 27 H 0.035 0.965 28 H 0.062 0.938 29 H 0.032 0.968 30 H 0.255 0.745 31 H 0.325 0.675 32 H 0.034 0.966 33 H 0.073 0.927 34 H 0.065 0.935 35 H 0.081 0.919 36 H 0.090 0.910 37 H 0.140 0.860 38 H 0.146 0.854 39 H 0.145 0.855 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.428 7.879 -13.110 15.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.157 4.157 3 C 0.125 3.875 4 H -0.018 1.018 5 C -0.519 4.519 6 H 0.064 0.936 7 C -0.188 4.188 8 N -0.564 5.564 9 Si 0.766 3.234 10 H -0.202 1.202 11 H -0.215 1.215 12 H -0.203 1.203 13 N -0.290 5.290 14 C -0.018 4.018 15 H 0.064 0.936 16 C -0.227 4.227 17 C -0.107 4.107 18 C -0.051 4.051 19 C -0.147 4.147 20 C -0.136 4.136 21 C -0.151 4.151 22 C -0.135 4.135 23 C -0.147 4.147 24 Br 0.046 6.954 25 H 0.074 0.926 26 H 0.070 0.930 27 H 0.054 0.946 28 H 0.080 0.920 29 H 0.051 0.949 30 H 0.064 0.936 31 H 0.145 0.855 32 H 0.053 0.947 33 H 0.091 0.909 34 H 0.084 0.916 35 H 0.100 0.900 36 H 0.108 0.892 37 H 0.158 0.842 38 H 0.164 0.836 39 H 0.163 0.837 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -2.265 7.323 -13.345 15.390 hybrid contribution 0.643 -0.089 1.309 1.461 sum -1.623 7.235 -12.036 14.136 Atomic orbital electron populations 1.21725 0.96731 1.00706 1.00201 1.21559 0.93763 0.99738 1.00681 1.18791 0.93368 0.90017 0.85295 1.01762 1.21365 0.92979 1.34563 1.03025 0.93595 1.25531 1.00893 0.96217 0.96146 1.69992 1.35599 1.40883 1.09959 0.85913 0.82732 0.77984 0.76793 1.20212 1.21488 1.20322 1.61190 1.37427 1.01801 1.28606 1.21403 0.95289 0.89814 0.95277 0.93577 1.22398 0.97344 1.02422 1.00515 1.20776 0.91688 1.00853 0.97384 1.19843 0.97310 0.92859 0.95066 1.21292 0.93078 0.99815 1.00532 1.21472 0.96580 0.97974 0.97557 1.21344 0.99785 0.94309 0.99680 1.21264 0.91704 1.00009 1.00559 1.21749 0.94080 0.94963 1.03931 1.96497 1.53206 1.54880 1.90804 0.92629 0.92969 0.94630 0.91972 0.94897 0.93612 0.85507 0.94715 0.90854 0.91638 0.90046 0.89187 0.84241 0.83646 0.83737 0.85284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.16 9.75 71.98 0.70 -4.46 16 2 C -0.12 -5.60 5.35 30.60 0.16 -5.44 16 3 C 0.23 11.37 1.82 44.17 0.08 11.45 16 4 H -0.04 -1.93 7.30 -2.39 -0.02 -1.95 16 5 C -0.48 -26.34 8.60 25.60 0.22 -26.12 16 6 H 0.05 2.61 7.81 -2.91 -0.02 2.59 16 7 C 0.01 0.51 5.29 84.65 0.45 0.95 16 8 N -0.92 -53.80 11.29 21.45 0.24 -53.56 16 9 Si 0.94 45.31 29.54 68.60 2.03 47.33 16 10 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 11 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 12 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 13 N -0.66 -25.75 2.88 -473.32 -1.36 -27.12 16 14 C 0.09 3.22 2.37 44.92 0.11 3.33 16 15 H 0.05 1.92 7.68 -2.39 -0.02 1.90 16 16 C -0.17 -4.91 9.17 71.98 0.66 -4.25 16 17 C -0.07 -1.99 4.69 29.85 0.14 -1.85 16 18 C -0.05 -1.56 5.02 -19.85 -0.10 -1.66 16 19 C -0.13 -3.71 9.68 22.27 0.22 -3.49 16 20 C -0.12 -3.16 10.05 22.27 0.22 -2.93 16 21 C -0.13 -3.68 10.05 22.27 0.22 -3.46 16 22 C -0.12 -3.64 9.79 22.29 0.22 -3.42 16 23 C -0.07 -2.27 5.94 22.31 0.13 -2.14 16 24 Br -0.04 -1.29 28.76 -20.37 -0.59 -1.88 16 25 H 0.05 1.86 6.47 -2.39 -0.02 1.84 16 26 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 27 H 0.03 1.37 8.14 -2.38 -0.02 1.35 16 28 H 0.06 3.39 5.94 -2.39 -0.01 3.37 16 29 H 0.03 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 31 H 0.33 11.88 5.57 -89.69 -0.50 11.38 16 32 H 0.03 1.15 7.65 -2.39 -0.02 1.13 16 33 H 0.07 1.78 8.14 -2.38 -0.02 1.76 16 34 H 0.06 1.70 8.04 -2.39 -0.02 1.68 16 35 H 0.08 2.24 6.89 -2.39 -0.02 2.22 16 36 H 0.09 2.11 8.05 -2.39 -0.02 2.09 16 37 H 0.14 3.37 8.06 -2.91 -0.02 3.34 16 38 H 0.15 3.01 8.06 -2.91 -0.02 2.98 16 39 H 0.14 3.17 8.06 -2.91 -0.02 3.15 16 40 H 0.13 3.75 8.06 -2.91 -0.02 3.72 16 Total: -1.00 -61.47 335.87 4.27 -57.20 By element: Atomic # 1 Polarization: 20.98 SS G_CDS: 0.52 Total: 21.50 kcal Atomic # 6 Polarization: -46.92 SS G_CDS: 3.43 Total: -43.48 kcal Atomic # 7 Polarization: -79.55 SS G_CDS: -1.12 Total: -80.67 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.33 kcal Atomic # 35 Polarization: -1.29 SS G_CDS: -0.59 Total: -1.88 kcal Total: -61.47 4.27 -57.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255159514.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.680 kcal (2) G-P(sol) polarization free energy of solvation -61.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.196 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds