Wall clock time and date at job start Tue Mar 31 2020 14:21:49
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 C 1.53003 * 109.47144 * 2 1
4 4 H 1.09000 * 109.46992 * 185.65876 * 3 2 1
5 5 C 1.50696 * 109.46934 * 305.66121 * 3 2 1
6 6 H 1.08000 * 119.99830 * 120.00021 * 5 3 2
7 7 C 1.37872 * 120.00296 * 299.99877 * 5 3 2
8 8 N 1.31518 * 120.00259 * 180.02562 * 7 5 3
9 9 Si 1.86800 * 119.99897 * 0.02562 * 7 5 3
10 10 H 1.48505 * 109.47137 * 89.99752 * 9 7 5
11 11 H 1.48497 * 109.47345 * 209.99844 * 9 7 5
12 12 H 1.48507 * 109.46987 * 330.00068 * 9 7 5
13 13 N 1.46904 * 109.47007 * 65.66341 * 3 2 1
14 14 C 1.46905 * 110.99850 * 197.89807 * 13 3 2
15 15 C 1.46900 * 111.00355 * 73.94208 * 13 3 2
16 16 H 1.09002 * 109.46786 * 43.72612 * 15 13 3
17 17 C 1.52992 * 109.47262 * 163.72854 * 15 13 3
18 18 C 1.50700 * 109.47150 * 283.73157 * 15 13 3
19 19 C 1.38258 * 119.99889 * 131.54406 * 18 15 13
20 20 C 1.38214 * 120.02172 * 179.97438 * 19 18 15
21 21 C 1.38234 * 120.01117 * 359.97438 * 20 19 18
22 22 C 1.38300 * 119.99370 * 359.97438 * 21 20 19
23 23 Br 1.89092 * 120.01502 * 179.97438 * 22 21 20
24 24 C 1.38195 * 119.99134 * 311.26868 * 18 15 13
25 25 H 1.09005 * 109.46522 * 58.83075 * 1 2 3
26 26 H 1.08995 * 109.47086 * 298.83232 * 1 2 3
27 27 H 1.08996 * 109.47094 * 178.82743 * 1 2 3
28 28 H 1.09004 * 109.46809 * 119.99344 * 2 1 3
29 29 H 1.08994 * 109.47564 * 239.99929 * 2 1 3
30 30 H 0.96995 * 119.99851 * 179.97438 * 8 7 5
31 31 H 1.08999 * 109.46941 * 61.84752 * 14 13 3
32 32 H 1.08999 * 109.46749 * 181.84844 * 14 13 3
33 33 H 1.09004 * 109.46591 * 301.85196 * 14 13 3
34 34 H 1.09002 * 109.47417 * 60.00145 * 17 15 13
35 35 H 1.09000 * 109.47022 * 180.02562 * 17 15 13
36 36 H 1.09006 * 109.47098 * 300.00126 * 17 15 13
37 37 H 1.08006 * 119.98732 * 359.97438 * 19 18 15
38 38 H 1.08004 * 119.99318 * 180.02562 * 20 19 18
39 39 H 1.08005 * 120.00413 * 180.02562 * 21 20 19
40 40 H 1.08001 * 120.01014 * 0.02562 * 24 18 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 3.1253 1.4442 -0.1013
5 6 1.4265 2.1922 -1.1544
6 1 0.8189 3.0656 -0.9691
7 6 1.6409 1.7631 -2.4470
8 7 1.1059 2.4177 -3.4544
9 14 2.6914 0.2521 -2.7673
10 1 1.8300 -0.9576 -2.7726
11 1 3.3637 0.3867 -4.0845
12 1 3.7156 0.1257 -1.6994
13 7 1.6651 2.0944 1.2620
14 6 1.7479 3.5564 1.1441
15 6 2.4945 1.6080 2.3726
16 1 3.5354 1.5561 2.0531
17 6 2.3722 2.5668 3.5585
18 6 2.0269 0.2362 2.7854
19 6 2.9430 -0.7864 2.9484
20 6 2.5147 -2.0447 3.3275
21 6 1.1701 -2.2811 3.5444
22 6 0.2533 -1.2583 3.3825
23 35 -1.5862 -1.5813 3.6783
24 6 0.6830 0.0019 3.0065
25 1 -0.3632 0.5319 -0.8794
26 1 -0.3633 0.4956 0.9002
27 1 -0.3633 -1.0274 -0.0210
28 1 1.8933 -0.5138 0.8901
29 1 1.8934 -0.5138 -0.8899
30 1 1.2571 2.1160 -4.3638
31 1 1.0471 3.8998 0.3831
32 1 1.4970 4.0128 2.1016
33 1 2.7610 3.8412 0.8601
34 1 1.3313 2.6187 3.8780
35 1 2.9880 2.2061 4.3824
36 1 2.7105 3.5591 3.2598
37 1 3.9937 -0.6020 2.7794
38 1 3.2308 -2.8431 3.4552
39 1 0.8355 -3.2643 3.8411
40 1 -0.0322 0.8018 2.8831
RHF calculation, no. of doubly occupied orbitals= 50
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001255177113.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:21:49
Heat of formation + Delta-G solvation = 48.976551 kcal
Electronic energy + Delta-G solvation = -21128.033048 eV
Core-core repulsion = 18182.773391 eV
Total energy + Delta-G solvation = -2945.259656 eV
No. of doubly occupied orbitals = 50
Molecular weight
(most abundant/longest-lived isotopes) = 325.074 amu
Computer time = 0.33 seconds
Orbital eigenvalues (eV)
-39.84131 -37.35377 -33.98628 -32.23748 -31.61950 -31.43690 -29.16533 -28.58591
-26.49680 -25.88210 -22.97036 -22.67281 -21.85276 -20.31432 -19.01294 -16.79824
-16.38314 -15.52242 -15.28603 -15.10582 -14.29694 -14.10903 -13.76416 -13.36954
-13.25251 -13.05062 -12.49682 -12.47324 -12.21601 -11.96650 -11.79047 -11.44111
-11.03293 -11.01518 -10.80338 -10.75397 -10.66198 -10.41496 -10.39433 -10.10715
-9.88529 -9.84949 -9.32254 -8.96808 -8.57410 -8.52490 -8.22463 -7.40891
-6.07476 -4.05293 1.28056 1.50300 1.79273 3.28433 3.37011 3.38075
3.78451 4.40205 4.64093 4.86387 5.01965 5.19826 5.26038 5.39964
5.49047 5.50753 5.63491 5.78799 5.83319 6.00972 6.13007 6.15202
6.22144 6.29833 6.31267 6.35744 6.40403 6.46658 6.55789 6.73141
6.79103 6.88184 6.97910 7.05367 7.16842 7.22027 7.50433 7.61351
7.92557 8.08260 8.62697 8.97378 9.54967 11.04352
Molecular weight = 325.07amu
Principal moments of inertia in cm(-1)
A = 0.015090 B = 0.005384 C = 0.004967
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1855.141121 B = 5199.776564 C = 5635.985079
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.124 4.124
2 C -0.125 4.125
3 C 0.186 3.814
4 H -0.003 1.003
5 C -0.506 4.506
6 H 0.088 0.912
7 C 0.075 3.925
8 N -0.898 5.898
9 Si 0.880 3.120
10 H -0.277 1.277
11 H -0.299 1.299
12 H -0.271 1.271
13 N -0.519 5.519
14 C 0.032 3.968
15 C 0.111 3.889
16 H 0.045 0.955
17 C -0.146 4.146
18 C -0.043 4.043
19 C -0.110 4.110
20 C -0.119 4.119
21 C -0.103 4.103
22 C -0.089 4.089
23 Br -0.063 7.063
24 C -0.053 4.053
25 H 0.067 0.933
26 H 0.056 0.944
27 H 0.017 0.983
28 H 0.048 0.952
29 H 0.037 0.963
30 H 0.263 0.737
31 H 0.085 0.915
32 H 0.051 0.949
33 H 0.016 0.984
34 H 0.063 0.937
35 H 0.053 0.947
36 H 0.065 0.935
37 H 0.122 0.878
38 H 0.125 0.875
39 H 0.125 0.875
40 H 0.140 0.860
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.038 -7.254 16.992 18.476
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.181 4.181
2 C -0.163 4.163
3 C 0.079 3.921
4 H 0.014 0.986
5 C -0.544 4.544
6 H 0.105 0.895
7 C -0.127 4.127
8 N -0.537 5.537
9 Si 0.711 3.289
10 H -0.204 1.204
11 H -0.227 1.227
12 H -0.196 1.196
13 N -0.244 5.244
14 C -0.115 4.115
15 C 0.002 3.998
16 H 0.063 0.937
17 C -0.203 4.203
18 C -0.045 4.045
19 C -0.129 4.129
20 C -0.138 4.138
21 C -0.123 4.123
22 C -0.169 4.169
23 Br 0.022 6.978
24 C -0.073 4.073
25 H 0.086 0.914
26 H 0.075 0.925
27 H 0.036 0.964
28 H 0.067 0.933
29 H 0.055 0.945
30 H 0.073 0.927
31 H 0.104 0.896
32 H 0.069 0.931
33 H 0.035 0.965
34 H 0.083 0.917
35 H 0.072 0.928
36 H 0.083 0.917
37 H 0.140 0.860
38 H 0.143 0.857
39 H 0.143 0.857
40 H 0.158 0.842
Dipole moment (debyes) X Y Z Total
from point charges -1.244 -7.469 16.996 18.606
hybrid contribution 1.870 -0.801 -0.790 2.182
sum 0.626 -8.269 16.206 18.204
Atomic orbital electron populations
1.21528 0.95453 0.98064 1.03069 1.22005 0.97602 0.97991 0.98661
1.19765 0.93494 0.91559 0.87272 0.98601 1.21086 1.31670 1.13183
0.88491 0.89460 1.24859 0.95256 0.96393 0.96186 1.69872 1.44649
1.40163 0.98994 0.86969 0.81172 0.84199 0.76583 1.20408 1.22669
1.19612 1.61980 1.52283 1.05658 1.04435 1.22406 1.00449 0.87898
1.00775 1.20609 0.95314 0.90851 0.93064 0.93706 1.22012 1.02419
0.99073 0.96793 1.19786 0.92898 0.95465 0.96327 1.21157 0.99696
0.92828 0.99213 1.20983 0.95102 0.97003 1.00700 1.20963 0.92799
0.98024 1.00558 1.21724 0.90067 0.97066 1.08004 1.96657 1.09326
1.96360 1.95437 1.20954 0.96088 0.95148 0.95092 0.91394 0.92504
0.96365 0.93337 0.94498 0.92682 0.89623 0.93078 0.96537 0.91748
0.92843 0.91658 0.85982 0.85705 0.85727 0.84228
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -2.67 8.89 37.16 0.33 -2.34 16
2 C -0.13 -2.75 4.63 -26.73 -0.12 -2.87 16
3 C 0.19 4.25 1.45 -68.86 -0.10 4.15 16
4 H 0.00 -0.08 6.83 -51.93 -0.35 -0.44 16
5 C -0.51 -13.45 6.99 -34.44 -0.24 -13.69 16
6 H 0.09 2.48 5.75 -52.49 -0.30 2.18 16
7 C 0.07 2.10 5.39 -17.82 -0.10 2.01 16
8 N -0.90 -26.82 13.96 55.43 0.77 -26.05 16
9 Si 0.88 22.07 24.31 -169.99 -4.13 17.94 16
10 H -0.28 -6.91 6.92 56.52 0.39 -6.52 16
11 H -0.30 -7.53 7.11 56.52 0.40 -7.13 16
12 H -0.27 -6.58 6.53 56.52 0.37 -6.21 16
13 N -0.52 -9.93 3.66 -229.68 -0.84 -10.77 16
14 C 0.03 0.59 8.12 60.07 0.49 1.08 16
15 C 0.11 1.77 2.39 -68.87 -0.16 1.60 16
16 H 0.05 0.75 7.53 -51.93 -0.39 0.35 16
17 C -0.15 -1.89 8.07 37.15 0.30 -1.59 16
18 C -0.04 -0.66 2.47 -104.63 -0.26 -0.92 16
19 C -0.11 -1.52 8.67 -39.58 -0.34 -1.86 16
20 C -0.12 -1.48 10.05 -39.59 -0.40 -1.87 16
21 C -0.10 -1.33 9.79 -39.56 -0.39 -1.72 16
22 C -0.09 -1.28 6.22 -39.51 -0.25 -1.52 16
23 Br -0.06 -0.83 33.70 -68.01 -2.29 -3.12 16
24 C -0.05 -0.81 6.16 -39.55 -0.24 -1.06 16
25 H 0.07 1.65 6.96 -51.93 -0.36 1.29 16
26 H 0.06 1.15 5.55 -51.93 -0.29 0.86 16
27 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16
28 H 0.05 0.97 3.93 -51.93 -0.20 0.77 16
29 H 0.04 0.87 3.44 -51.93 -0.18 0.70 16
30 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16
31 H 0.09 1.77 5.74 -51.93 -0.30 1.47 16
32 H 0.05 0.77 5.87 -51.93 -0.30 0.47 16
33 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16
34 H 0.06 0.83 8.01 -51.93 -0.42 0.41 16
35 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16
36 H 0.06 0.81 6.29 -51.93 -0.33 0.49 16
37 H 0.12 1.50 7.98 -52.48 -0.42 1.08 16
38 H 0.12 1.22 8.06 -52.48 -0.42 0.79 16
39 H 0.12 1.36 8.06 -52.48 -0.42 0.94 16
40 H 0.14 2.26 7.30 -52.49 -0.38 1.88 16
LS Contribution 315.52 15.07 4.75 4.75
Total: -1.00 -28.59 315.52 -8.74 -37.33
By element:
Atomic # 1 Polarization: 6.04 SS G_CDS: -5.52 Total: 0.52 kcal
Atomic # 6 Polarization: -19.12 SS G_CDS: -1.48 Total: -20.60 kcal
Atomic # 7 Polarization: -36.75 SS G_CDS: -0.07 Total: -36.82 kcal
Atomic # 14 Polarization: 22.07 SS G_CDS: -4.13 Total: 17.94 kcal
Atomic # 35 Polarization: -0.83 SS G_CDS: -2.29 Total: -3.12 kcal
Total LS contribution 4.75 Total: 4.75 kcal
Total: -28.59 -8.74 -37.33 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001255177113.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 86.309 kcal
(2) G-P(sol) polarization free energy of solvation -28.594 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.715 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.739 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.333 kcal
(6) G-S(sol) free energy of system = (1) + (5) 48.977 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.33 seconds