Wall clock time and date at job start Tue Mar 31 2020 14:21:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53008 * 109.46930 * 2 1 4 4 H 1.09005 * 109.46883 * 53.18811 * 3 2 1 5 5 C 1.50702 * 109.47026 * 173.18356 * 3 2 1 6 6 H 1.07999 * 119.99406 * 120.00472 * 5 3 2 7 7 C 1.37875 * 119.99914 * 300.00171 * 5 3 2 8 8 N 1.31507 * 120.00403 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99851 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47166 * 59.99835 * 9 7 5 11 11 H 1.48498 * 109.47301 * 179.97438 * 9 7 5 12 12 H 1.48507 * 109.46918 * 300.00006 * 9 7 5 13 13 N 1.46890 * 109.47061 * 293.18802 * 3 2 1 14 14 C 1.46902 * 110.99862 * 163.32603 * 13 3 2 15 15 C 1.46904 * 110.99870 * 287.27584 * 13 3 2 16 16 H 1.08997 * 109.47373 * 316.83889 * 15 13 3 17 17 C 1.53006 * 109.47045 * 196.84225 * 15 13 3 18 18 C 1.50700 * 109.46776 * 76.84269 * 15 13 3 19 19 C 1.38266 * 119.99350 * 48.80469 * 18 15 13 20 20 C 1.38214 * 120.01673 * 180.27964 * 19 18 15 21 21 C 1.38242 * 120.01526 * 359.97438 * 20 19 18 22 22 C 1.38303 * 119.98624 * 359.97438 * 21 20 19 23 23 Br 1.89100 * 120.00995 * 180.02562 * 22 21 20 24 24 C 1.38194 * 119.99394 * 229.07393 * 18 15 13 25 25 H 1.09003 * 109.47483 * 302.01791 * 1 2 3 26 26 H 1.09000 * 109.47667 * 62.02138 * 1 2 3 27 27 H 1.09006 * 109.47004 * 182.02378 * 1 2 3 28 28 H 1.08998 * 109.47520 * 240.00380 * 2 1 3 29 29 H 1.08997 * 109.47269 * 119.99905 * 2 1 3 30 30 H 0.97001 * 120.00620 * 179.97438 * 8 7 5 31 31 H 1.08999 * 109.47180 * 190.28801 * 14 13 3 32 32 H 1.08994 * 109.47113 * 310.28871 * 14 13 3 33 33 H 1.09002 * 109.47439 * 70.29361 * 14 13 3 34 34 H 1.08996 * 109.46950 * 66.12549 * 17 15 13 35 35 H 1.09002 * 109.47171 * 186.12759 * 17 15 13 36 36 H 1.09000 * 109.46961 * 306.12379 * 17 15 13 37 37 H 1.08001 * 119.99194 * 0.27123 * 19 18 15 38 38 H 1.08010 * 119.99608 * 179.97438 * 20 19 18 39 39 H 1.08002 * 120.00990 * 179.97438 * 21 20 19 40 40 H 1.08002 * 120.00778 * 359.74195 * 24 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5804 1.9904 0.8228 5 6 3.5375 1.4460 0.1686 6 1 4.1657 1.8825 -0.5937 7 6 4.1055 0.8918 1.2961 8 7 3.3405 0.3608 2.2247 9 14 5.9617 0.8967 1.5055 10 1 6.4562 2.2969 1.5058 11 1 6.3164 0.2467 2.7927 12 1 6.5882 0.1507 0.3845 13 7 1.6890 2.0860 -1.2730 14 6 1.7976 3.5475 -1.1718 15 6 2.5198 1.5711 -2.3697 16 1 3.5548 1.4946 -2.0365 17 6 2.4376 2.5251 -3.5631 18 6 2.0221 0.2091 -2.7801 19 6 0.6751 0.0085 -3.0189 20 6 0.2173 -1.2418 -3.3897 21 6 1.1061 -2.2923 -3.5225 22 6 2.4537 -2.0918 -3.2848 23 35 3.6702 -3.5280 -3.4670 24 6 2.9114 -0.8404 -2.9123 25 1 -0.3634 0.5449 0.8713 26 1 -0.3634 0.4821 -0.9075 27 1 -0.3633 -1.0271 0.0363 28 1 1.8933 -0.5137 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.7401 -0.0294 3.0178 31 1 1.3616 4.0066 -2.0590 32 1 1.2641 3.8909 -0.2855 33 1 2.8478 3.8294 -1.0957 34 1 2.8971 3.4776 -3.2991 35 1 2.9645 2.0906 -4.4126 36 1 1.3926 2.6867 -3.8277 37 1 -0.0196 0.8290 -2.9155 38 1 -0.8351 -1.3982 -3.5757 39 1 0.7483 -3.2693 -3.8118 40 1 3.9635 -0.6837 -2.7256 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255177114.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:21:51 Heat of formation + Delta-G solvation = 23.055288 kcal Electronic energy + Delta-G solvation = -21171.599964 eV Core-core repulsion = 18225.216278 eV Total energy + Delta-G solvation = -2946.383687 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 325.074 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.94470 -38.58813 -35.27615 -33.35173 -33.28954 -32.45805 -30.43679 -29.46594 -28.63462 -26.57870 -24.67200 -23.54532 -23.24904 -21.60750 -20.48873 -18.49668 -17.44856 -17.07691 -16.38070 -16.08925 -15.94623 -15.35594 -15.07538 -14.58519 -14.30907 -14.19968 -13.76606 -13.65584 -13.31743 -13.11889 -13.06348 -12.99718 -12.80881 -12.44162 -12.37085 -12.25589 -12.02887 -11.80356 -11.58637 -11.47905 -11.42474 -11.23696 -11.11903 -10.96735 -10.41921 -9.55740 -9.28578 -8.85573 -8.00616 -6.21525 0.34456 0.51321 0.74394 1.35028 1.37173 1.42397 2.39486 2.83057 3.18339 3.49016 3.91976 4.07345 4.28208 4.44574 4.53778 4.55777 4.61155 4.64360 4.77812 4.81057 4.83917 4.90917 5.00280 5.03037 5.11004 5.18092 5.22831 5.27097 5.36373 5.41710 5.50553 5.57821 5.58749 5.72389 5.81208 5.90441 6.07292 6.16901 6.23775 6.43296 6.74497 7.01156 7.48478 8.93929 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.011665 B = 0.006397 C = 0.005058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2399.816145 B = 4375.771662 C = 5534.428466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.113 4.113 3 C 0.223 3.777 4 H -0.002 1.002 5 C -0.545 4.545 6 H 0.054 0.946 7 C 0.025 3.975 8 N -0.908 5.908 9 Si 0.932 3.068 10 H -0.274 1.274 11 H -0.287 1.287 12 H -0.274 1.274 13 N -0.524 5.524 14 C 0.036 3.964 15 C 0.108 3.892 16 H 0.044 0.956 17 C -0.137 4.137 18 C -0.040 4.040 19 C -0.079 4.079 20 C -0.113 4.113 21 C -0.105 4.105 22 C -0.100 4.100 23 Br -0.065 7.065 24 C -0.105 4.105 25 H 0.023 0.977 26 H 0.069 0.931 27 H 0.034 0.966 28 H 0.056 0.944 29 H 0.047 0.953 30 H 0.258 0.742 31 H 0.085 0.915 32 H 0.047 0.953 33 H 0.009 0.991 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.074 0.926 37 H 0.139 0.861 38 H 0.157 0.843 39 H 0.145 0.855 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.827 -3.727 -14.327 15.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.151 4.151 3 C 0.116 3.884 4 H 0.016 0.984 5 C -0.585 4.585 6 H 0.072 0.928 7 C -0.175 4.175 8 N -0.548 5.548 9 Si 0.759 3.241 10 H -0.199 1.199 11 H -0.213 1.213 12 H -0.200 1.200 13 N -0.247 5.247 14 C -0.112 4.112 15 C 0.000 4.000 16 H 0.062 0.938 17 C -0.194 4.194 18 C -0.041 4.041 19 C -0.097 4.097 20 C -0.132 4.132 21 C -0.125 4.125 22 C -0.179 4.179 23 Br 0.020 6.980 24 C -0.125 4.125 25 H 0.042 0.958 26 H 0.088 0.912 27 H 0.053 0.947 28 H 0.074 0.926 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.103 0.897 32 H 0.066 0.934 33 H 0.028 0.972 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.092 0.908 37 H 0.156 0.844 38 H 0.175 0.825 39 H 0.163 0.837 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -4.849 -4.451 -14.313 15.754 hybrid contribution 2.068 0.392 1.230 2.438 sum -2.781 -4.059 -13.083 13.977 Atomic orbital electron populations 1.21626 0.96864 0.99079 1.00707 1.21623 0.94181 0.98338 1.00988 1.19032 0.91746 0.91795 0.85847 0.98410 1.21942 0.94381 1.37858 1.04269 0.92777 1.25505 1.00815 0.95212 0.95929 1.70004 1.35819 1.39504 1.09438 0.86009 0.82573 0.78214 0.77290 1.19942 1.21254 1.19978 1.62479 1.52675 1.04608 1.04960 1.22260 0.98669 0.88777 1.01527 1.20633 0.95917 0.91572 0.91918 0.93816 1.21927 1.02995 0.98365 0.96105 1.19703 0.94003 0.94462 0.95966 1.21202 0.94582 0.98023 0.95933 1.21429 1.00697 0.91890 0.99149 1.21235 0.90506 1.00722 1.00018 1.21741 0.94693 0.92581 1.08894 1.96611 1.60650 1.43748 1.96987 1.20924 0.99913 0.91888 0.99802 0.95757 0.91202 0.94652 0.92567 0.93482 0.93237 0.89675 0.93380 0.97206 0.92055 0.91973 0.90756 0.84371 0.82500 0.83684 0.87403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.94 9.23 71.98 0.66 -4.28 16 2 C -0.11 -5.28 4.77 30.60 0.15 -5.14 16 3 C 0.22 10.70 1.66 44.17 0.07 10.77 16 4 H 0.00 -0.11 7.79 -2.38 -0.02 -0.13 16 5 C -0.55 -28.68 7.25 25.60 0.19 -28.49 16 6 H 0.05 2.84 5.89 -2.91 -0.02 2.82 16 7 C 0.03 1.38 5.28 84.66 0.45 1.83 16 8 N -0.91 -52.14 11.29 21.45 0.24 -51.90 16 9 Si 0.93 43.71 29.54 68.60 2.03 45.74 16 10 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 11 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 12 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 13 N -0.52 -20.06 3.77 -880.57 -3.32 -23.38 16 14 C 0.04 1.25 8.16 127.69 1.04 2.29 16 15 C 0.11 3.83 2.13 44.17 0.09 3.92 16 16 H 0.04 1.86 5.00 -2.39 -0.01 1.85 16 17 C -0.14 -3.70 7.89 71.98 0.57 -3.14 16 18 C -0.04 -1.33 2.48 -19.87 -0.05 -1.38 16 19 C -0.08 -2.25 6.55 22.27 0.15 -2.10 16 20 C -0.11 -2.77 10.05 22.26 0.22 -2.54 16 21 C -0.11 -2.75 9.79 22.29 0.22 -2.54 16 22 C -0.10 -3.10 6.22 22.31 0.14 -2.97 16 23 Br -0.07 -1.87 33.70 -20.37 -0.69 -2.56 16 24 C -0.10 -3.67 8.31 22.29 0.19 -3.48 16 25 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.07 2.44 5.63 -2.39 -0.01 2.43 16 27 H 0.03 1.28 8.14 -2.38 -0.02 1.26 16 28 H 0.06 2.55 3.80 -2.39 -0.01 2.54 16 29 H 0.05 2.59 5.92 -2.39 -0.01 2.57 16 30 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 31 H 0.08 2.33 6.74 -2.39 -0.02 2.31 16 32 H 0.05 1.71 7.85 -2.39 -0.02 1.69 16 33 H 0.01 0.35 7.79 -2.39 -0.02 0.33 16 34 H 0.06 1.60 6.86 -2.39 -0.02 1.58 16 35 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.07 1.79 7.98 -2.39 -0.02 1.77 16 37 H 0.14 3.69 7.42 -2.91 -0.02 3.67 16 38 H 0.16 2.76 8.06 -2.91 -0.02 2.74 16 39 H 0.15 3.09 8.06 -2.91 -0.02 3.07 16 40 H 0.11 4.08 7.98 -2.91 -0.02 4.05 16 Total: -1.00 -58.55 324.90 3.37 -55.18 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: 1.03 Total: 14.15 kcal Atomic # 6 Polarization: -41.32 SS G_CDS: 4.08 Total: -37.24 kcal Atomic # 7 Polarization: -72.20 SS G_CDS: -3.08 Total: -75.28 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Atomic # 35 Polarization: -1.87 SS G_CDS: -0.69 Total: -2.56 kcal Total: -58.55 3.37 -55.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255177114.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.239 kcal (2) G-P(sol) polarization free energy of solvation -58.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds