Wall clock time and date at job start Tue Mar 31 2020 14:38:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47005 * 2 1 4 4 C 1.53000 * 109.47478 * 239.99578 * 2 1 3 5 5 C 1.53004 * 109.47255 * 174.25879 * 4 2 1 6 6 C 1.52992 * 109.46875 * 180.02562 * 5 4 2 7 7 Br 1.96605 * 109.46962 * 179.97438 * 6 5 4 8 8 N 1.46500 * 109.47036 * 119.99697 * 2 1 3 9 9 C 1.36941 * 119.99953 * 65.66679 * 8 2 1 10 10 H 1.07995 * 120.00204 * 36.97191 * 9 8 2 11 11 C 1.38816 * 119.99863 * 217.24281 * 9 8 2 12 12 N 1.31624 * 119.99825 * 212.34289 * 11 9 8 13 13 Si 1.86793 * 119.99952 * 32.34290 * 11 9 8 14 14 H 1.48501 * 109.47182 * 86.03742 * 13 11 9 15 15 H 1.48500 * 109.47200 * 206.03773 * 13 11 9 16 16 H 1.48497 * 109.47515 * 326.03906 * 13 11 9 17 17 C 1.46507 * 120.00343 * 245.66866 * 8 2 1 18 18 C 1.50699 * 109.46975 * 276.11487 * 17 8 2 19 19 C 1.38237 * 119.99635 * 269.72204 * 18 17 8 20 20 C 1.38232 * 120.00243 * 179.76343 * 19 18 17 21 21 C 1.38242 * 119.99495 * 0.51233 * 20 19 18 22 22 C 1.38235 * 120.00266 * 359.74263 * 21 20 19 23 23 C 1.38231 * 120.00596 * 89.99542 * 18 17 8 24 24 H 1.08997 * 109.47080 * 64.35430 * 1 2 3 25 25 H 1.09002 * 109.46728 * 184.35613 * 1 2 3 26 26 H 1.08995 * 109.47184 * 304.35379 * 1 2 3 27 27 H 1.08993 * 109.47167 * 294.25922 * 4 2 1 28 28 H 1.09004 * 109.46715 * 54.25777 * 4 2 1 29 29 H 1.09005 * 109.46703 * 300.00037 * 5 4 2 30 30 H 1.08993 * 109.46872 * 59.99757 * 5 4 2 31 31 H 1.09000 * 109.47391 * 299.99670 * 6 5 4 32 32 H 1.09002 * 109.47932 * 60.00141 * 6 5 4 33 33 H 0.97002 * 119.99360 * 180.02562 * 12 11 9 34 34 H 1.09004 * 109.46780 * 36.10588 * 17 8 2 35 35 H 1.08997 * 109.47238 * 156.10965 * 17 8 2 36 36 H 1.08005 * 119.99932 * 0.02562 * 19 18 17 37 37 H 1.08000 * 120.00384 * 180.22445 * 20 19 18 38 38 H 1.08004 * 119.99760 * 179.72084 * 21 20 19 39 39 H 1.07993 * 120.00094 * 179.97438 * 22 21 20 40 40 H 1.07998 * 119.99757 * 0.02562 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5633 -0.5975 -1.3234 6 6 4.0732 -1.3183 -2.5728 7 35 6.0304 -1.1586 -2.6686 8 7 2.0183 -0.6905 1.1962 9 6 1.7858 -2.0306 1.3561 10 1 1.8165 -2.6897 0.5012 11 6 1.5051 -2.5408 2.6162 12 7 1.8910 -3.7584 2.9341 13 14 0.5799 -1.4994 3.8606 14 1 -0.8815 -1.6591 3.6508 15 1 0.9336 -1.9387 5.2343 16 1 0.9519 -0.0724 3.6861 17 6 2.7554 0.0524 2.2215 18 6 4.2074 0.1443 1.8288 19 6 5.0964 -0.8333 2.2352 20 6 6.4273 -0.7517 1.8710 21 6 6.8715 0.3130 1.1093 22 6 5.9836 1.2933 0.7074 23 6 4.6515 1.2089 1.0672 24 1 -0.3633 0.4448 -0.9264 25 1 -0.3633 -1.0247 0.0781 26 1 -0.3633 0.5799 0.8484 27 1 1.7632 -1.7743 -1.1992 28 1 1.5952 -0.2703 -2.1362 29 1 3.8402 0.4556 -1.3733 30 1 4.0081 -1.0484 -0.4363 31 1 3.7963 -2.3714 -2.5233 32 1 3.6284 -0.8670 -3.4597 33 1 1.6945 -4.1150 3.8145 34 1 2.3395 1.0559 2.3124 35 1 2.6693 -0.4645 3.1772 36 1 4.7501 -1.6630 2.8337 37 1 7.1212 -1.5173 2.1854 38 1 7.9123 0.3791 0.8285 39 1 6.3306 2.1253 0.1127 40 1 3.9580 1.9751 0.7538 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001256778764.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:39 Heat of formation + Delta-G solvation = 34.917865 kcal Electronic energy + Delta-G solvation = -20981.635072 eV Core-core repulsion = 18035.765785 eV Total energy + Delta-G solvation = -2945.869287 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 325.074 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -38.81448 -36.94127 -34.09551 -32.01888 -31.70207 -30.23834 -29.69164 -28.79455 -25.58668 -25.34266 -23.34816 -21.86139 -21.12946 -20.62418 -19.40940 -16.78479 -15.83304 -15.43702 -15.02461 -14.59033 -14.43074 -14.06685 -13.64105 -13.37769 -12.86622 -12.74019 -12.54793 -12.27300 -12.16104 -11.94861 -11.87358 -11.42277 -11.22011 -10.88737 -10.74433 -10.62783 -10.35287 -10.28114 -10.12886 -10.05643 -9.71211 -9.54126 -9.50482 -9.38085 -8.44800 -8.24789 -8.00860 -6.83372 -6.08715 -3.36905 2.02471 2.05239 2.07798 3.35250 3.47130 3.51763 4.40173 4.53901 5.03585 5.11711 5.17041 5.27572 5.46152 5.50825 5.61373 5.63085 5.74057 5.80522 5.91415 6.06812 6.10856 6.15432 6.19968 6.30632 6.34557 6.42426 6.46366 6.61024 6.70337 6.71867 6.79691 6.94083 6.99076 7.08040 7.10102 7.17359 7.44575 7.68833 8.00530 8.38330 8.98217 9.70604 10.13848 11.06444 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.014837 B = 0.005761 C = 0.005058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1886.783732 B = 4859.319120 C = 5534.591688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.174 3.826 3 H 0.050 0.950 4 C -0.123 4.123 5 C -0.111 4.111 6 C -0.067 4.067 7 Br -0.181 7.181 8 N -0.586 5.586 9 C -0.265 4.265 10 H 0.077 0.923 11 C 0.047 3.953 12 N -0.880 5.880 13 Si 0.844 3.156 14 H -0.290 1.290 15 H -0.298 1.298 16 H -0.261 1.261 17 C 0.179 3.821 18 C -0.078 4.078 19 C -0.094 4.094 20 C -0.123 4.123 21 C -0.130 4.130 22 C -0.123 4.123 23 C -0.118 4.118 24 H 0.038 0.962 25 H 0.064 0.936 26 H 0.042 0.958 27 H 0.072 0.928 28 H 0.046 0.954 29 H 0.060 0.940 30 H 0.095 0.905 31 H 0.094 0.906 32 H 0.087 0.913 33 H 0.262 0.738 34 H 0.040 0.960 35 H 0.066 0.934 36 H 0.122 0.878 37 H 0.109 0.891 38 H 0.106 0.894 39 H 0.106 0.894 40 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.419 8.245 -9.045 13.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.067 3.933 3 H 0.068 0.932 4 C -0.163 4.163 5 C -0.149 4.149 6 C -0.183 4.183 7 Br -0.101 7.101 8 N -0.307 5.307 9 C -0.393 4.393 10 H 0.094 0.906 11 C -0.155 4.155 12 N -0.519 5.519 13 Si 0.671 3.329 14 H -0.218 1.218 15 H -0.225 1.225 16 H -0.186 1.186 17 C 0.053 3.947 18 C -0.081 4.081 19 C -0.113 4.113 20 C -0.141 4.141 21 C -0.149 4.149 22 C -0.141 4.141 23 C -0.137 4.137 24 H 0.057 0.943 25 H 0.083 0.917 26 H 0.061 0.939 27 H 0.091 0.909 28 H 0.065 0.935 29 H 0.078 0.922 30 H 0.113 0.887 31 H 0.113 0.887 32 H 0.106 0.894 33 H 0.072 0.928 34 H 0.059 0.941 35 H 0.084 0.916 36 H 0.140 0.860 37 H 0.128 0.872 38 H 0.124 0.876 39 H 0.125 0.875 40 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 7.060 8.127 -8.964 14.009 hybrid contribution -0.991 0.267 0.694 1.239 sum 6.069 8.393 -8.270 13.254 Atomic orbital electron populations 1.22184 0.98005 1.02382 0.99104 1.20360 0.91883 0.93932 0.87102 0.93182 1.21930 0.93983 1.02662 0.97695 1.21797 0.96814 0.99805 0.96441 1.24844 0.85182 1.05233 1.03002 1.97313 1.14558 1.99034 1.99209 1.44122 1.59466 1.07059 1.20059 1.18527 1.44376 0.81610 0.94800 0.90555 1.25445 0.98034 0.94801 0.97214 1.70050 1.43044 1.17849 1.20967 0.87539 0.82042 0.82428 0.80877 1.21760 1.22484 1.18570 1.20359 0.85922 0.95244 0.93164 1.20936 0.97721 0.93279 0.96192 1.21122 0.92461 0.98236 0.99507 1.21051 0.96061 0.97875 0.99098 1.20847 0.98735 0.95440 0.99840 1.20876 0.93808 0.98828 1.00614 1.20886 0.95119 0.98317 0.99397 0.94320 0.91702 0.93878 0.90920 0.93516 0.92159 0.88673 0.88745 0.89441 0.92785 0.94149 0.91589 0.85979 0.87244 0.87625 0.87540 0.87484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.72 9.30 37.16 0.35 -2.37 16 2 C 0.17 3.08 2.73 -67.93 -0.19 2.90 16 3 H 0.05 0.83 7.89 -51.93 -0.41 0.42 16 4 C -0.12 -1.99 4.54 -26.73 -0.12 -2.11 16 5 C -0.11 -1.74 4.29 -26.73 -0.11 -1.86 16 6 C -0.07 -0.93 6.61 37.15 0.25 -0.68 16 7 Br -0.18 -2.60 33.93 -68.01 -2.31 -4.91 16 8 N -0.59 -12.27 1.46 -167.02 -0.24 -12.51 16 9 C -0.27 -6.58 8.62 -15.06 -0.13 -6.71 16 10 H 0.08 2.08 6.67 -52.49 -0.35 1.73 16 11 C 0.05 1.24 5.03 -17.43 -0.09 1.16 16 12 N -0.88 -25.04 13.97 55.49 0.78 -24.26 16 13 Si 0.84 20.37 26.49 -169.99 -4.50 15.87 16 14 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 15 H -0.30 -7.41 7.11 56.52 0.40 -7.01 16 16 H -0.26 -5.93 5.50 56.52 0.31 -5.62 16 17 C 0.18 3.62 3.87 -5.19 -0.02 3.60 16 18 C -0.08 -1.45 4.03 -104.62 -0.42 -1.87 16 19 C -0.09 -1.80 9.70 -39.58 -0.38 -2.18 16 20 C -0.12 -2.05 10.05 -39.58 -0.40 -2.45 16 21 C -0.13 -1.98 10.05 -39.58 -0.40 -2.38 16 22 C -0.12 -1.84 10.05 -39.58 -0.40 -2.24 16 23 C -0.12 -1.91 8.03 -39.59 -0.32 -2.22 16 24 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 25 H 0.06 1.24 7.66 -51.93 -0.40 0.85 16 26 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.07 1.34 6.56 -51.93 -0.34 0.99 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.93 7.39 -51.93 -0.38 0.54 16 30 H 0.09 1.83 6.26 -51.93 -0.33 1.50 16 31 H 0.09 1.34 8.14 -51.93 -0.42 0.91 16 32 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 33 H 0.26 7.19 8.31 -40.82 -0.34 6.86 16 34 H 0.04 0.77 8.01 -51.93 -0.42 0.35 16 35 H 0.07 1.47 4.42 -51.93 -0.23 1.24 16 36 H 0.12 2.58 8.06 -52.48 -0.42 2.15 16 37 H 0.11 1.66 8.06 -52.49 -0.42 1.23 16 38 H 0.11 1.40 8.06 -52.48 -0.42 0.98 16 39 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 40 H 0.11 1.59 8.03 -52.49 -0.42 1.17 16 LS Contribution 336.62 15.07 5.07 5.07 Total: -1.00 -26.53 336.62 -9.90 -36.43 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -6.31 Total: 3.73 kcal Atomic # 6 Polarization: -17.03 SS G_CDS: -2.38 Total: -19.42 kcal Atomic # 7 Polarization: -37.30 SS G_CDS: 0.53 Total: -36.77 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -4.50 Total: 15.87 kcal Atomic # 35 Polarization: -2.60 SS G_CDS: -2.31 Total: -4.91 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -26.53 -9.90 -36.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256778764.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.349 kcal (2) G-P(sol) polarization free energy of solvation -26.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.431 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds