Wall clock time and date at job start Tue Mar 31 2020 14:37:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47507 * 2 1 4 4 C 1.53003 * 109.47254 * 239.99933 * 2 1 3 5 5 C 1.50703 * 109.47405 * 174.72867 * 4 2 1 6 6 C 1.38231 * 120.00417 * 98.97009 * 5 4 2 7 7 C 1.38224 * 120.01206 * 179.72083 * 6 5 4 8 8 C 1.38264 * 120.01680 * 0.55581 * 7 6 5 9 9 C 1.38200 * 120.00708 * 359.72145 * 8 7 6 10 10 C 1.38302 * 120.00480 * 279.24626 * 5 4 2 11 11 Br 1.89105 * 120.01139 * 359.97438 * 10 5 4 12 12 N 1.46897 * 109.47203 * 120.00350 * 2 1 3 13 13 C 1.46906 * 110.99871 * 273.10153 * 12 2 1 14 14 C 1.53003 * 109.47206 * 179.97438 * 13 12 2 15 15 C 1.52995 * 109.47036 * 180.02562 * 14 13 12 16 16 C 1.50698 * 109.47156 * 179.97438 * 15 14 13 17 17 H 1.08001 * 119.99890 * 0.02562 * 16 15 14 18 18 C 1.37878 * 120.00315 * 179.97438 * 16 15 14 19 19 N 1.31516 * 119.99790 * 0.02562 * 18 16 15 20 20 Si 1.86793 * 120.00357 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47085 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.47333 * 119.99857 * 20 18 16 23 23 H 1.48502 * 109.47118 * 240.00238 * 20 18 16 24 24 H 1.08998 * 109.47060 * 60.00121 * 1 2 3 25 25 H 1.08993 * 109.47227 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46856 * 300.00175 * 1 2 3 27 27 H 1.08998 * 109.47306 * 294.72887 * 4 2 1 28 28 H 1.08999 * 109.46965 * 54.72740 * 4 2 1 29 29 H 1.08006 * 119.99576 * 359.97438 * 6 5 4 30 30 H 1.07998 * 119.99329 * 180.29853 * 7 6 5 31 31 H 1.07998 * 119.99736 * 179.74094 * 8 7 6 32 32 H 1.08007 * 120.00168 * 179.97438 * 9 8 7 33 33 H 1.00903 * 111.00485 * 149.15159 * 12 2 1 34 34 H 1.09002 * 109.47059 * 60.00125 * 13 12 2 35 35 H 1.08996 * 109.47020 * 299.99950 * 13 12 2 36 36 H 1.08996 * 109.47113 * 299.99921 * 14 13 12 37 37 H 1.09002 * 109.46987 * 60.00108 * 14 13 12 38 38 H 1.08997 * 109.47480 * 300.00194 * 15 14 13 39 39 H 1.09002 * 109.47206 * 60.00166 * 15 14 13 40 40 H 0.97003 * 120.00462 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5414 -0.6092 -1.3163 6 6 4.3327 -1.6577 -0.8857 7 6 5.7097 -1.5574 -0.9524 8 6 6.2963 -0.4039 -1.4393 9 6 5.5060 0.6470 -1.8647 10 6 4.1278 0.5447 -1.8033 11 35 3.0459 1.9821 -2.3860 12 7 2.0197 -0.6926 1.1994 13 6 2.1252 0.2329 2.3354 14 6 2.6365 -0.5232 3.5634 15 6 2.7458 0.4404 4.7466 16 6 3.2488 -0.3044 5.9563 17 1 3.4690 -1.3595 5.8878 18 6 3.4290 0.3613 7.1502 19 7 3.1614 1.6463 7.2335 20 14 4.0532 -0.5617 8.6494 21 1 4.2780 -1.9863 8.2954 22 1 5.3308 0.0419 9.1059 23 1 3.0474 -0.4746 9.7385 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.7559 -1.7726 -1.2033 28 1 1.6016 -0.2649 -2.1367 29 1 3.8749 -2.5570 -0.5007 30 1 6.3275 -2.3786 -0.6204 31 1 7.3723 -0.3242 -1.4874 32 1 5.9644 1.5482 -2.2446 33 1 2.9027 -1.1466 1.0197 34 1 1.1441 0.6556 2.5520 35 1 2.8198 1.0353 2.0871 36 1 1.9415 -1.3254 3.8115 37 1 3.6175 -0.9463 3.3471 38 1 3.4405 1.2429 4.4988 39 1 1.7646 0.8631 4.9628 40 1 3.2877 2.1146 8.0735 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001256830499.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:50 Heat of formation + Delta-G solvation = 0.004523 kcal Electronic energy + Delta-G solvation = -19321.830706 eV Core-core repulsion = 16374.447463 eV Total energy + Delta-G solvation = -2947.383243 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 325.074 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.85397 -37.19228 -34.32721 -32.84778 -32.28574 -31.32916 -29.63480 -29.29366 -26.63187 -25.77258 -22.84481 -22.51939 -21.68307 -20.44088 -19.79272 -16.94289 -16.30264 -16.05441 -15.56092 -15.39049 -14.71109 -14.40031 -14.03497 -13.91014 -13.69533 -13.24964 -12.67843 -12.45529 -12.21373 -12.06814 -11.93509 -11.71732 -11.34633 -11.28851 -11.20461 -11.05662 -10.89444 -10.64530 -10.49715 -10.42770 -10.24969 -9.64155 -9.29842 -9.09147 -8.98972 -8.82166 -8.31000 -8.08465 -5.95903 -3.97753 0.88180 1.05296 1.45730 3.33392 3.38738 3.40602 3.45162 4.39174 4.43976 4.51115 4.59516 4.75743 4.97504 5.05710 5.12782 5.26164 5.38034 5.39901 5.50522 5.63433 5.72234 5.80443 5.83069 5.92569 5.97882 6.02303 6.11421 6.17585 6.23674 6.34741 6.44446 6.59200 6.78266 6.84961 7.19307 7.43717 7.71481 7.74026 7.89195 8.05031 8.48474 9.09732 9.66000 11.15643 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.016375 B = 0.003140 C = 0.002989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.501122 B = 8914.718428 C = 9364.534536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.085 3.915 3 H 0.050 0.950 4 C -0.093 4.093 5 C -0.056 4.056 6 C -0.112 4.112 7 C -0.099 4.099 8 C -0.120 4.120 9 C -0.090 4.090 10 C -0.090 4.090 11 Br -0.050 7.050 12 N -0.687 5.687 13 C 0.060 3.940 14 C -0.106 4.106 15 C 0.022 3.978 16 C -0.517 4.517 17 H 0.055 0.945 18 C 0.055 3.945 19 N -0.897 5.897 20 Si 0.891 3.109 21 H -0.273 1.273 22 H -0.285 1.285 23 H -0.284 1.284 24 H 0.051 0.949 25 H 0.060 0.940 26 H 0.058 0.942 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.135 0.865 30 H 0.130 0.870 31 H 0.130 0.870 32 H 0.131 0.869 33 H 0.335 0.665 34 H 0.067 0.933 35 H 0.022 0.978 36 H 0.055 0.945 37 H 0.042 0.958 38 H 0.013 0.987 39 H 0.016 0.984 40 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.593 -2.528 -25.264 25.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.025 4.025 3 H 0.068 0.932 4 C -0.131 4.131 5 C -0.058 4.058 6 C -0.131 4.131 7 C -0.117 4.117 8 C -0.139 4.139 9 C -0.110 4.110 10 C -0.170 4.170 11 Br 0.035 6.965 12 N -0.319 5.319 13 C -0.069 4.069 14 C -0.144 4.144 15 C -0.016 4.016 16 C -0.555 4.555 17 H 0.073 0.927 18 C -0.145 4.145 19 N -0.536 5.536 20 Si 0.719 3.281 21 H -0.197 1.197 22 H -0.211 1.211 23 H -0.210 1.210 24 H 0.070 0.930 25 H 0.079 0.921 26 H 0.077 0.923 27 H 0.104 0.896 28 H 0.104 0.896 29 H 0.153 0.847 30 H 0.148 0.852 31 H 0.148 0.852 32 H 0.149 0.851 33 H 0.154 0.846 34 H 0.085 0.915 35 H 0.040 0.960 36 H 0.074 0.926 37 H 0.061 0.939 38 H 0.031 0.969 39 H 0.034 0.966 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 0.554 -2.060 -25.188 25.278 hybrid contribution 1.501 -0.115 0.840 1.723 sum 2.055 -2.174 -24.348 24.531 Atomic orbital electron populations 1.21755 0.94305 1.02187 1.01242 1.21496 0.95966 0.96358 0.88641 0.93238 1.21028 0.89720 1.02956 0.99382 1.19875 0.96710 0.92472 0.96747 1.21179 0.93636 0.98636 0.99665 1.21336 0.94972 0.97966 0.97433 1.21176 1.00112 0.93301 0.99271 1.21112 0.91514 0.99443 0.98883 1.21741 0.94359 0.94142 1.06711 1.96691 1.68381 1.42939 1.88442 1.60711 1.34355 1.32187 1.04659 1.22148 1.00212 0.93664 0.90831 1.21606 0.99136 0.99410 0.94205 1.19065 0.97044 0.94170 0.91303 1.21298 1.43514 0.95650 0.95041 0.92654 1.25030 0.95729 0.94861 0.98919 1.69981 1.49306 1.08315 1.26021 0.86553 0.78469 0.80069 0.83023 1.19730 1.21084 1.21018 0.92952 0.92094 0.92313 0.89635 0.89610 0.84677 0.85181 0.85181 0.85130 0.84574 0.91498 0.95993 0.92595 0.93884 0.96876 0.96589 0.93132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 9.44 37.16 0.35 -1.29 16 2 C 0.09 1.10 2.55 -67.71 -0.17 0.93 16 3 H 0.05 0.70 6.77 -51.93 -0.35 0.35 16 4 C -0.09 -1.00 4.34 -27.88 -0.12 -1.12 16 5 C -0.06 -0.62 4.63 -104.60 -0.48 -1.11 16 6 C -0.11 -1.15 8.26 -39.59 -0.33 -1.48 16 7 C -0.10 -0.93 10.05 -39.58 -0.40 -1.33 16 8 C -0.12 -1.12 10.05 -39.59 -0.40 -1.52 16 9 C -0.09 -0.92 9.79 -39.56 -0.39 -1.31 16 10 C -0.09 -1.02 6.22 -39.52 -0.25 -1.27 16 11 Br -0.05 -0.54 30.96 -68.01 -2.11 -2.65 16 12 N -0.69 -10.43 6.32 -106.72 -0.67 -11.10 16 13 C 0.06 1.10 5.48 -3.82 -0.02 1.08 16 14 C -0.11 -2.27 5.41 -26.73 -0.14 -2.42 16 15 C 0.02 0.58 4.97 -27.89 -0.14 0.44 16 16 C -0.52 -15.01 9.11 -34.44 -0.31 -15.32 16 17 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 18 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 19 N -0.90 -27.50 13.29 55.43 0.74 -26.76 16 20 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 21 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 22 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 24 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 26 H 0.06 0.77 7.58 -51.93 -0.39 0.38 16 27 H 0.09 0.85 8.02 -51.93 -0.42 0.43 16 28 H 0.09 0.85 7.11 -51.93 -0.37 0.49 16 29 H 0.14 1.21 8.00 -52.48 -0.42 0.79 16 30 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 31 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 32 H 0.13 1.14 8.06 -52.48 -0.42 0.72 16 33 H 0.34 4.89 6.23 -39.29 -0.24 4.64 16 34 H 0.07 1.25 7.57 -51.93 -0.39 0.86 16 35 H 0.02 0.42 8.05 -51.93 -0.42 0.00 16 36 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 345.59 15.07 5.21 5.21 Total: -1.00 -31.05 345.59 -11.11 -42.16 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -6.35 Total: 0.34 kcal Atomic # 6 Polarization: -21.28 SS G_CDS: -2.90 Total: -24.18 kcal Atomic # 7 Polarization: -37.93 SS G_CDS: 0.06 Total: -37.87 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Atomic # 35 Polarization: -0.54 SS G_CDS: -2.11 Total: -2.65 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.05 -11.11 -42.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256830499.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.160 kcal (2) G-P(sol) polarization free energy of solvation -31.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds