Wall clock time and date at job start Tue Mar 31 2020 14:37:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47507 * 2 1 4 4 C 1.53003 * 109.47254 * 239.99933 * 2 1 3 5 5 C 1.50703 * 109.47405 * 174.72867 * 4 2 1 6 6 C 1.38231 * 120.00417 * 98.97009 * 5 4 2 7 7 C 1.38224 * 120.01206 * 179.72083 * 6 5 4 8 8 C 1.38264 * 120.01680 * 0.55581 * 7 6 5 9 9 C 1.38200 * 120.00708 * 359.72145 * 8 7 6 10 10 C 1.38302 * 120.00480 * 279.24626 * 5 4 2 11 11 Br 1.89105 * 120.01139 * 359.97438 * 10 5 4 12 12 N 1.46897 * 109.47203 * 120.00350 * 2 1 3 13 13 C 1.46906 * 110.99871 * 273.10153 * 12 2 1 14 14 C 1.53003 * 109.47206 * 179.97438 * 13 12 2 15 15 C 1.52995 * 109.47036 * 180.02562 * 14 13 12 16 16 C 1.50698 * 109.47156 * 179.97438 * 15 14 13 17 17 H 1.08001 * 119.99890 * 0.02562 * 16 15 14 18 18 C 1.37878 * 120.00315 * 179.97438 * 16 15 14 19 19 N 1.31516 * 119.99790 * 0.02562 * 18 16 15 20 20 Si 1.86793 * 120.00357 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47085 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.47333 * 119.99857 * 20 18 16 23 23 H 1.48502 * 109.47118 * 240.00238 * 20 18 16 24 24 H 1.08998 * 109.47060 * 60.00121 * 1 2 3 25 25 H 1.08993 * 109.47227 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46856 * 300.00175 * 1 2 3 27 27 H 1.08998 * 109.47306 * 294.72887 * 4 2 1 28 28 H 1.08999 * 109.46965 * 54.72740 * 4 2 1 29 29 H 1.08006 * 119.99576 * 359.97438 * 6 5 4 30 30 H 1.07998 * 119.99329 * 180.29853 * 7 6 5 31 31 H 1.07998 * 119.99736 * 179.74094 * 8 7 6 32 32 H 1.08007 * 120.00168 * 179.97438 * 9 8 7 33 33 H 1.00903 * 111.00485 * 149.15159 * 12 2 1 34 34 H 1.09002 * 109.47059 * 60.00125 * 13 12 2 35 35 H 1.08996 * 109.47020 * 299.99950 * 13 12 2 36 36 H 1.08996 * 109.47113 * 299.99921 * 14 13 12 37 37 H 1.09002 * 109.46987 * 60.00108 * 14 13 12 38 38 H 1.08997 * 109.47480 * 300.00194 * 15 14 13 39 39 H 1.09002 * 109.47206 * 60.00166 * 15 14 13 40 40 H 0.97003 * 120.00462 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5414 -0.6092 -1.3163 6 6 4.3327 -1.6577 -0.8857 7 6 5.7097 -1.5574 -0.9524 8 6 6.2963 -0.4039 -1.4393 9 6 5.5060 0.6470 -1.8647 10 6 4.1278 0.5447 -1.8033 11 35 3.0459 1.9821 -2.3860 12 7 2.0197 -0.6926 1.1994 13 6 2.1252 0.2329 2.3354 14 6 2.6365 -0.5232 3.5634 15 6 2.7458 0.4404 4.7466 16 6 3.2488 -0.3044 5.9563 17 1 3.4690 -1.3595 5.8878 18 6 3.4290 0.3613 7.1502 19 7 3.1614 1.6463 7.2335 20 14 4.0532 -0.5617 8.6494 21 1 4.2780 -1.9863 8.2954 22 1 5.3308 0.0419 9.1059 23 1 3.0474 -0.4746 9.7385 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.7559 -1.7726 -1.2033 28 1 1.6016 -0.2649 -2.1367 29 1 3.8749 -2.5570 -0.5007 30 1 6.3275 -2.3786 -0.6204 31 1 7.3723 -0.3242 -1.4874 32 1 5.9644 1.5482 -2.2446 33 1 2.9027 -1.1466 1.0197 34 1 1.1441 0.6556 2.5520 35 1 2.8198 1.0353 2.0871 36 1 1.9415 -1.3254 3.8115 37 1 3.6175 -0.9463 3.3471 38 1 3.4405 1.2429 4.4988 39 1 1.7646 0.8631 4.9628 40 1 3.2877 2.1146 8.0735 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001256830499.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:50 Heat of formation + Delta-G solvation = -16.542322 kcal Electronic energy + Delta-G solvation = -19322.548231 eV Core-core repulsion = 16374.447463 eV Total energy + Delta-G solvation = -2948.100768 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 325.074 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.65500 -38.34976 -36.05377 -34.39925 -33.29322 -32.51429 -30.98473 -30.19983 -27.82709 -27.31569 -24.43699 -23.48016 -22.60966 -21.99512 -21.06891 -18.49188 -17.68548 -17.14089 -16.71882 -16.48724 -16.17449 -15.73343 -15.56045 -14.85477 -14.48620 -14.42893 -14.17496 -13.88017 -13.51114 -13.42466 -13.05064 -12.95137 -12.76121 -12.73042 -12.46707 -12.21983 -12.12507 -12.05346 -11.85877 -11.73496 -11.47350 -11.37215 -11.13522 -11.03018 -10.56161 -9.85365 -9.62110 -9.36073 -8.19933 -6.31261 0.11195 0.29332 0.64807 1.40245 1.40753 1.54451 2.41332 2.63011 3.13221 3.22358 3.64387 3.82071 3.96465 4.10017 4.24697 4.28660 4.33358 4.39454 4.44885 4.53290 4.68444 4.71375 4.76618 4.86788 4.93675 4.95710 4.98917 5.14014 5.16858 5.23305 5.25307 5.41810 5.42423 5.48196 5.52243 5.73872 5.85145 5.87164 6.09741 6.27116 6.50585 6.85696 7.38151 8.92425 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.016375 B = 0.003140 C = 0.002989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.501122 B = 8914.718428 C = 9364.534536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.085 3.915 3 H 0.036 0.964 4 C -0.085 4.085 5 C -0.071 4.071 6 C -0.121 4.121 7 C -0.103 4.103 8 C -0.122 4.122 9 C -0.102 4.102 10 C -0.107 4.107 11 Br -0.054 7.054 12 N -0.682 5.682 13 C 0.075 3.925 14 C -0.090 4.090 15 C 0.026 3.974 16 C -0.541 4.541 17 H 0.061 0.939 18 C -0.002 4.002 19 N -0.935 5.935 20 Si 0.967 3.033 21 H -0.260 1.260 22 H -0.278 1.278 23 H -0.278 1.278 24 H 0.071 0.929 25 H 0.066 0.934 26 H 0.041 0.959 27 H 0.096 0.904 28 H 0.093 0.907 29 H 0.147 0.853 30 H 0.152 0.848 31 H 0.153 0.847 32 H 0.141 0.859 33 H 0.341 0.659 34 H 0.060 0.940 35 H 0.011 0.989 36 H 0.055 0.945 37 H 0.048 0.952 38 H -0.013 1.013 39 H -0.010 1.010 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.357 -4.187 -25.598 26.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.024 4.024 3 H 0.054 0.946 4 C -0.122 4.122 5 C -0.073 4.073 6 C -0.140 4.140 7 C -0.121 4.121 8 C -0.141 4.141 9 C -0.122 4.122 10 C -0.187 4.187 11 Br 0.031 6.969 12 N -0.315 5.315 13 C -0.055 4.055 14 C -0.128 4.128 15 C -0.012 4.012 16 C -0.579 4.579 17 H 0.079 0.921 18 C -0.199 4.199 19 N -0.576 5.576 20 Si 0.791 3.209 21 H -0.184 1.184 22 H -0.203 1.203 23 H -0.203 1.203 24 H 0.090 0.910 25 H 0.085 0.915 26 H 0.061 0.939 27 H 0.114 0.886 28 H 0.112 0.888 29 H 0.165 0.835 30 H 0.170 0.830 31 H 0.171 0.829 32 H 0.158 0.842 33 H 0.160 0.840 34 H 0.079 0.921 35 H 0.029 0.971 36 H 0.074 0.926 37 H 0.067 0.933 38 H 0.005 0.995 39 H 0.009 0.991 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.315 -3.729 -25.545 25.849 hybrid contribution 1.282 0.432 0.904 1.627 sum 2.597 -3.297 -24.641 24.996 Atomic orbital electron populations 1.21746 0.93518 1.02602 1.01411 1.21544 0.96524 0.95759 0.88593 0.94558 1.20943 0.89717 1.03274 0.98271 1.19986 0.96925 0.92879 0.97525 1.21416 0.94176 0.98833 0.99555 1.21673 0.95001 0.98645 0.96830 1.21517 1.01331 0.92882 0.98366 1.21364 0.91382 1.00324 0.99097 1.21929 0.94941 0.94315 1.07485 1.96671 1.68534 1.43174 1.88488 1.60663 1.34655 1.31394 1.04743 1.21830 0.99294 0.93415 0.90942 1.21351 0.99603 0.98241 0.93556 1.18965 0.94706 0.94375 0.93164 1.21714 1.43875 0.96136 0.96159 0.92109 1.26011 0.95687 0.95754 1.02475 1.70115 1.50160 1.10111 1.27172 0.85373 0.77951 0.79067 0.78507 1.18432 1.20322 1.20320 0.91035 0.91514 0.93941 0.88553 0.88832 0.83524 0.83010 0.82906 0.84158 0.83989 0.92124 0.97077 0.92578 0.93343 0.99459 0.99123 0.92787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.08 9.44 71.98 0.68 -2.40 16 2 C 0.09 2.12 2.55 44.92 0.11 2.24 16 3 H 0.04 1.02 6.77 -2.39 -0.02 1.00 16 4 C -0.08 -1.69 4.34 29.85 0.13 -1.56 16 5 C -0.07 -1.50 4.63 -19.85 -0.09 -1.59 16 6 C -0.12 -2.27 8.26 22.26 0.18 -2.09 16 7 C -0.10 -1.73 10.05 22.27 0.22 -1.51 16 8 C -0.12 -2.06 10.05 22.27 0.22 -1.84 16 9 C -0.10 -1.99 9.79 22.29 0.22 -1.77 16 10 C -0.11 -2.35 6.22 22.31 0.14 -2.21 16 11 Br -0.05 -1.15 30.96 -20.37 -0.63 -1.78 16 12 N -0.68 -20.10 6.32 -491.55 -3.10 -23.20 16 13 C 0.07 2.75 5.48 86.30 0.47 3.22 16 14 C -0.09 -3.87 5.41 30.59 0.17 -3.70 16 15 C 0.03 1.40 4.97 29.85 0.15 1.55 16 16 C -0.54 -31.62 9.11 25.60 0.23 -31.38 16 17 H 0.06 3.41 7.74 -2.91 -0.02 3.38 16 18 C 0.00 -0.11 5.46 84.65 0.46 0.35 16 19 N -0.94 -58.14 13.29 21.45 0.28 -57.85 16 20 Si 0.97 44.88 29.54 68.60 2.03 46.90 16 21 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 22 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 23 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 24 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 25 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.04 1.09 7.58 -2.39 -0.02 1.08 16 27 H 0.10 1.71 8.02 -2.39 -0.02 1.69 16 28 H 0.09 1.72 7.11 -2.39 -0.02 1.71 16 29 H 0.15 2.31 8.00 -2.91 -0.02 2.29 16 30 H 0.15 1.80 8.06 -2.91 -0.02 1.78 16 31 H 0.15 1.78 8.06 -2.91 -0.02 1.75 16 32 H 0.14 2.33 8.06 -2.91 -0.02 2.30 16 33 H 0.34 9.48 6.23 -89.69 -0.56 8.92 16 34 H 0.06 2.31 7.57 -2.39 -0.02 2.29 16 35 H 0.01 0.43 8.05 -2.39 -0.02 0.41 16 36 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 37 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 38 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 39 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 40 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 Total: -1.00 -66.47 345.59 2.33 -64.14 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: 0.45 Total: 14.46 kcal Atomic # 6 Polarization: -45.97 SS G_CDS: 3.30 Total: -42.67 kcal Atomic # 7 Polarization: -78.24 SS G_CDS: -2.82 Total: -81.06 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.90 kcal Atomic # 35 Polarization: -1.15 SS G_CDS: -0.63 Total: -1.78 kcal Total: -66.47 2.33 -64.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256830499.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.598 kcal (2) G-P(sol) polarization free energy of solvation -66.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds