Wall clock time and date at job start Tue Mar 31 2020 14:37:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47387 * 2 1 4 4 C 1.53002 * 109.47179 * 120.00617 * 2 1 3 5 5 C 1.50698 * 109.47265 * 185.00055 * 4 2 1 6 6 C 1.38239 * 120.00282 * 264.72770 * 5 4 2 7 7 C 1.38216 * 120.00843 * 179.72455 * 6 5 4 8 8 C 1.38267 * 120.02181 * 0.54145 * 7 6 5 9 9 C 1.38199 * 120.00470 * 359.73273 * 8 7 6 10 10 C 1.38305 * 120.00767 * 84.99463 * 5 4 2 11 11 Br 1.89100 * 120.00803 * 359.97438 * 10 5 4 12 12 N 1.46904 * 109.46874 * 240.00341 * 2 1 3 13 13 C 1.46899 * 111.00029 * 85.00270 * 12 2 1 14 14 C 1.52997 * 109.47254 * 179.97438 * 13 12 2 15 15 C 1.52992 * 109.47482 * 179.97438 * 14 13 12 16 16 C 1.50698 * 109.47592 * 179.97438 * 15 14 13 17 17 H 1.08003 * 120.00057 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00356 * 179.97438 * 16 15 14 19 19 N 1.31519 * 119.99989 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00117 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47306 * 0.02562 * 20 18 16 22 22 H 1.48507 * 109.47019 * 120.00329 * 20 18 16 23 23 H 1.48498 * 109.47326 * 240.00104 * 20 18 16 24 24 H 1.08997 * 109.47489 * 299.99436 * 1 2 3 25 25 H 1.09007 * 109.47004 * 59.99740 * 1 2 3 26 26 H 1.09007 * 109.47280 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.46658 * 304.99898 * 4 2 1 28 28 H 1.09003 * 109.46922 * 64.99638 * 4 2 1 29 29 H 1.07997 * 119.99866 * 359.96870 * 6 5 4 30 30 H 1.08003 * 119.99151 * 180.25530 * 7 6 5 31 31 H 1.07993 * 119.99973 * 179.74643 * 8 7 6 32 32 H 1.08005 * 120.00206 * 179.97438 * 9 8 7 33 33 H 1.00902 * 111.00190 * 321.03970 * 12 2 1 34 34 H 1.09002 * 109.47043 * 299.99792 * 13 12 2 35 35 H 1.09001 * 109.47354 * 59.99854 * 13 12 2 36 36 H 1.09002 * 109.47153 * 300.00004 * 14 13 12 37 37 H 1.08998 * 109.47533 * 59.99633 * 14 13 12 38 38 H 1.09002 * 109.47103 * 300.00247 * 15 14 13 39 39 H 1.09001 * 109.47066 * 60.00169 * 15 14 13 40 40 H 0.96996 * 119.99885 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5419 -0.6151 1.3127 6 6 4.3289 -1.6351 0.8116 7 6 5.7064 -1.5351 0.8646 8 6 6.2979 -0.4200 1.4290 9 6 5.5118 0.5976 1.9353 10 6 4.1330 0.5005 1.8773 11 35 3.0569 1.8931 2.5691 12 7 2.0196 -0.6925 -1.1995 13 6 2.0824 0.2227 -2.3469 14 6 2.5961 -0.5327 -3.5742 15 6 2.6610 0.4203 -4.7694 16 6 3.1676 -0.3236 -5.9782 17 1 3.4178 -1.3714 -5.9017 18 6 3.3106 0.3332 -7.1820 19 7 3.0053 1.6091 -7.2753 20 14 3.9392 -0.5887 -8.6801 21 1 4.2095 -2.0022 -8.3140 22 1 2.9154 -0.5433 -9.7549 23 1 5.1918 0.0464 -9.1626 24 1 -0.3634 0.5137 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.6054 -0.2619 2.1369 28 1 1.7516 -1.7717 1.2054 29 1 3.8674 -2.5085 0.3750 30 1 6.3210 -2.3304 0.4693 31 1 7.3742 -0.3442 1.4739 32 1 5.9739 1.4684 2.3765 33 1 1.4495 -1.4979 -1.4101 34 1 1.0870 0.6165 -2.5525 35 1 2.7588 1.0463 -2.1182 36 1 3.5916 -0.9261 -3.3684 37 1 1.9201 -1.3565 -3.8032 38 1 1.6653 0.8133 -4.9751 39 1 3.3369 1.2443 -4.5408 40 1 3.1063 2.0712 -8.1221 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001256830500.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:53 Heat of formation + Delta-G solvation = -0.141751 kcal Electronic energy + Delta-G solvation = -19270.325180 eV Core-core repulsion = 16322.935594 eV Total energy + Delta-G solvation = -2947.389586 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 325.074 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.55413 -37.27491 -34.30485 -32.82639 -32.16425 -31.28871 -29.48064 -29.11414 -26.51742 -25.76218 -22.68866 -22.38551 -21.66764 -20.69556 -19.81433 -16.79873 -16.31122 -15.78497 -15.37152 -14.94236 -14.63945 -14.39129 -14.27116 -13.78453 -13.49091 -13.18271 -12.84068 -12.52517 -12.18557 -12.13445 -11.99317 -11.55292 -11.30564 -11.14259 -11.08459 -11.06258 -10.83762 -10.68878 -10.54296 -10.43650 -10.13871 -9.66244 -9.29993 -9.01496 -8.82681 -8.64516 -8.31829 -8.06581 -5.96793 -3.98682 1.10818 1.32089 1.60563 3.32762 3.40064 3.44487 3.62596 4.38260 4.50769 4.63478 4.78732 4.92152 5.05924 5.20952 5.26262 5.35191 5.39058 5.40401 5.53152 5.65045 5.73751 5.79809 5.84914 5.93729 5.97198 6.09285 6.14756 6.21871 6.38333 6.39486 6.49139 6.77442 6.82176 6.83971 7.18323 7.41094 7.70425 7.73073 7.88129 8.04140 8.47464 9.08874 9.65188 11.14744 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.016786 B = 0.003071 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.651253 B = 9114.760334 C = 9597.793952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.087 3.913 3 H 0.080 0.920 4 C -0.079 4.079 5 C -0.031 4.031 6 C -0.086 4.086 7 C -0.104 4.104 8 C -0.124 4.124 9 C -0.094 4.094 10 C -0.094 4.094 11 Br -0.060 7.060 12 N -0.682 5.682 13 C 0.062 3.938 14 C -0.105 4.105 15 C 0.022 3.978 16 C -0.517 4.517 17 H 0.055 0.945 18 C 0.055 3.945 19 N -0.897 5.897 20 Si 0.891 3.109 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 H 0.058 0.942 25 H 0.058 0.942 26 H 0.056 0.944 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.131 0.869 30 H 0.126 0.874 31 H 0.126 0.874 32 H 0.127 0.873 33 H 0.336 0.664 34 H 0.023 0.977 35 H 0.064 0.936 36 H 0.054 0.946 37 H 0.043 0.957 38 H 0.013 0.987 39 H 0.015 0.985 40 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.258 -3.017 24.830 25.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.024 4.024 3 H 0.099 0.901 4 C -0.117 4.117 5 C -0.033 4.033 6 C -0.105 4.105 7 C -0.122 4.122 8 C -0.143 4.143 9 C -0.114 4.114 10 C -0.173 4.173 11 Br 0.025 6.975 12 N -0.312 5.312 13 C -0.067 4.067 14 C -0.143 4.143 15 C -0.016 4.016 16 C -0.555 4.555 17 H 0.073 0.927 18 C -0.145 4.145 19 N -0.536 5.536 20 Si 0.719 3.281 21 H -0.197 1.197 22 H -0.211 1.211 23 H -0.210 1.210 24 H 0.077 0.923 25 H 0.077 0.923 26 H 0.075 0.925 27 H 0.097 0.903 28 H 0.094 0.906 29 H 0.149 0.851 30 H 0.144 0.856 31 H 0.144 0.856 32 H 0.145 0.855 33 H 0.153 0.847 34 H 0.042 0.958 35 H 0.082 0.918 36 H 0.073 0.927 37 H 0.062 0.938 38 H 0.031 0.969 39 H 0.033 0.967 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 0.516 -2.257 25.131 25.237 hybrid contribution -0.321 -0.495 -1.401 1.520 sum 0.194 -2.752 23.730 23.890 Atomic orbital electron populations 1.22486 0.97156 1.02008 1.02320 1.21496 0.92247 0.98382 0.90239 0.90149 1.20819 0.90558 1.01958 0.98341 1.19596 0.96194 0.92327 0.95178 1.20997 0.93130 0.98673 0.97730 1.21294 0.95141 0.97941 0.97825 1.21089 0.99811 0.93985 0.99394 1.21006 0.91561 0.99285 0.99574 1.21679 0.94193 0.94971 1.06497 1.96644 1.68973 1.46886 1.84949 1.60646 1.56576 1.09971 1.04028 1.22105 0.98919 0.95398 0.90243 1.21594 0.99941 0.98839 0.93909 1.19064 0.96956 0.94366 0.91212 1.21295 1.43274 0.96418 0.94522 0.92669 1.25031 0.95678 0.94874 0.98954 1.69981 1.49061 1.09018 1.25561 0.86557 0.78520 0.80066 0.82991 1.19732 1.21071 1.21025 0.92260 0.92268 0.92493 0.90252 0.90608 0.85138 0.85647 0.85601 0.85531 0.84669 0.95845 0.91781 0.92702 0.93786 0.96879 0.96660 0.93128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.94 9.16 37.16 0.34 -1.60 16 2 C 0.09 1.06 2.56 -67.71 -0.17 0.88 16 3 H 0.08 1.11 7.34 -51.93 -0.38 0.73 16 4 C -0.08 -0.84 4.47 -27.88 -0.12 -0.97 16 5 C -0.03 -0.37 4.89 -104.60 -0.51 -0.88 16 6 C -0.09 -1.00 9.55 -39.59 -0.38 -1.38 16 7 C -0.10 -1.12 10.05 -39.58 -0.40 -1.52 16 8 C -0.12 -1.30 10.05 -39.58 -0.40 -1.70 16 9 C -0.09 -1.06 9.79 -39.56 -0.39 -1.44 16 10 C -0.09 -1.13 6.22 -39.52 -0.25 -1.38 16 11 Br -0.06 -0.66 31.42 -68.01 -2.14 -2.80 16 12 N -0.68 -9.58 5.85 -106.72 -0.62 -10.20 16 13 C 0.06 1.08 5.48 -3.83 -0.02 1.06 16 14 C -0.10 -2.19 5.41 -26.74 -0.14 -2.34 16 15 C 0.02 0.57 4.97 -27.89 -0.14 0.43 16 16 C -0.52 -14.91 9.11 -34.44 -0.31 -15.23 16 17 H 0.06 1.55 7.74 -52.48 -0.41 1.15 16 18 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 19 N -0.90 -27.41 13.29 55.43 0.74 -26.67 16 20 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 21 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 22 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 23 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 24 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 25 H 0.06 0.70 7.45 -51.92 -0.39 0.32 16 26 H 0.06 0.55 8.13 -51.93 -0.42 0.13 16 27 H 0.08 0.80 6.89 -51.93 -0.36 0.44 16 28 H 0.08 0.73 8.05 -51.93 -0.42 0.31 16 29 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 30 H 0.13 1.11 8.06 -52.48 -0.42 0.69 16 31 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 32 H 0.13 1.21 8.06 -52.48 -0.42 0.79 16 33 H 0.34 4.38 8.47 -39.29 -0.33 4.05 16 34 H 0.02 0.41 7.44 -51.93 -0.39 0.03 16 35 H 0.06 1.20 8.06 -51.93 -0.42 0.78 16 36 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 349.41 15.07 5.27 5.27 Total: -1.00 -30.61 349.41 -11.22 -41.83 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: -6.45 Total: 0.19 kcal Atomic # 6 Polarization: -21.53 SS G_CDS: -2.99 Total: -24.52 kcal Atomic # 7 Polarization: -36.99 SS G_CDS: 0.11 Total: -36.88 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Atomic # 35 Polarization: -0.66 SS G_CDS: -2.14 Total: -2.80 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.61 -11.22 -41.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256830500.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.686 kcal (2) G-P(sol) polarization free energy of solvation -30.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds