Wall clock time and date at job start Tue Mar 31 2020 14:37:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47387 * 2 1 4 4 C 1.53002 * 109.47179 * 120.00617 * 2 1 3 5 5 C 1.50698 * 109.47265 * 185.00055 * 4 2 1 6 6 C 1.38239 * 120.00282 * 264.72770 * 5 4 2 7 7 C 1.38216 * 120.00843 * 179.72455 * 6 5 4 8 8 C 1.38267 * 120.02181 * 0.54145 * 7 6 5 9 9 C 1.38199 * 120.00470 * 359.73273 * 8 7 6 10 10 C 1.38305 * 120.00767 * 84.99463 * 5 4 2 11 11 Br 1.89100 * 120.00803 * 359.97438 * 10 5 4 12 12 N 1.46904 * 109.46874 * 240.00341 * 2 1 3 13 13 C 1.46899 * 111.00029 * 85.00270 * 12 2 1 14 14 C 1.52997 * 109.47254 * 179.97438 * 13 12 2 15 15 C 1.52992 * 109.47482 * 179.97438 * 14 13 12 16 16 C 1.50698 * 109.47592 * 179.97438 * 15 14 13 17 17 H 1.08003 * 120.00057 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00356 * 179.97438 * 16 15 14 19 19 N 1.31519 * 119.99989 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00117 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47306 * 0.02562 * 20 18 16 22 22 H 1.48507 * 109.47019 * 120.00329 * 20 18 16 23 23 H 1.48498 * 109.47326 * 240.00104 * 20 18 16 24 24 H 1.08997 * 109.47489 * 299.99436 * 1 2 3 25 25 H 1.09007 * 109.47004 * 59.99740 * 1 2 3 26 26 H 1.09007 * 109.47280 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.46658 * 304.99898 * 4 2 1 28 28 H 1.09003 * 109.46922 * 64.99638 * 4 2 1 29 29 H 1.07997 * 119.99866 * 359.96870 * 6 5 4 30 30 H 1.08003 * 119.99151 * 180.25530 * 7 6 5 31 31 H 1.07993 * 119.99973 * 179.74643 * 8 7 6 32 32 H 1.08005 * 120.00206 * 179.97438 * 9 8 7 33 33 H 1.00902 * 111.00190 * 321.03970 * 12 2 1 34 34 H 1.09002 * 109.47043 * 299.99792 * 13 12 2 35 35 H 1.09001 * 109.47354 * 59.99854 * 13 12 2 36 36 H 1.09002 * 109.47153 * 300.00004 * 14 13 12 37 37 H 1.08998 * 109.47533 * 59.99633 * 14 13 12 38 38 H 1.09002 * 109.47103 * 300.00247 * 15 14 13 39 39 H 1.09001 * 109.47066 * 60.00169 * 15 14 13 40 40 H 0.96996 * 119.99885 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5419 -0.6151 1.3127 6 6 4.3289 -1.6351 0.8116 7 6 5.7064 -1.5351 0.8646 8 6 6.2979 -0.4200 1.4290 9 6 5.5118 0.5976 1.9353 10 6 4.1330 0.5005 1.8773 11 35 3.0569 1.8931 2.5691 12 7 2.0196 -0.6925 -1.1995 13 6 2.0824 0.2227 -2.3469 14 6 2.5961 -0.5327 -3.5742 15 6 2.6610 0.4203 -4.7694 16 6 3.1676 -0.3236 -5.9782 17 1 3.4178 -1.3714 -5.9017 18 6 3.3106 0.3332 -7.1820 19 7 3.0053 1.6091 -7.2753 20 14 3.9392 -0.5887 -8.6801 21 1 4.2095 -2.0022 -8.3140 22 1 2.9154 -0.5433 -9.7549 23 1 5.1918 0.0464 -9.1626 24 1 -0.3634 0.5137 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.6054 -0.2619 2.1369 28 1 1.7516 -1.7717 1.2054 29 1 3.8674 -2.5085 0.3750 30 1 6.3210 -2.3304 0.4693 31 1 7.3742 -0.3442 1.4739 32 1 5.9739 1.4684 2.3765 33 1 1.4495 -1.4979 -1.4101 34 1 1.0870 0.6165 -2.5525 35 1 2.7588 1.0463 -2.1182 36 1 3.5916 -0.9261 -3.3684 37 1 1.9201 -1.3565 -3.8032 38 1 1.6653 0.8133 -4.9751 39 1 3.3369 1.2443 -4.5408 40 1 3.1063 2.0712 -8.1221 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001256830500.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:53 Heat of formation + Delta-G solvation = -16.171546 kcal Electronic energy + Delta-G solvation = -19271.020284 eV Core-core repulsion = 16322.935594 eV Total energy + Delta-G solvation = -2948.084690 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 325.074 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.40587 -38.41037 -36.02493 -34.38008 -33.21696 -32.52133 -30.76948 -30.08248 -27.65646 -27.30800 -24.37969 -23.31478 -22.63104 -22.08551 -21.17251 -18.49742 -17.61216 -16.80866 -16.52630 -16.46024 -16.03710 -15.66320 -15.40439 -14.82815 -14.48528 -14.30398 -14.25841 -13.79703 -13.71820 -13.32014 -13.11756 -12.93569 -12.73694 -12.68141 -12.45365 -12.18782 -12.03731 -11.95207 -11.90507 -11.59537 -11.50926 -11.35935 -11.08681 -10.96823 -10.55889 -9.67998 -9.52607 -9.22290 -8.19887 -6.31045 0.25885 0.47963 0.73979 1.40092 1.40469 1.54118 2.41217 2.78311 3.13345 3.26416 3.77733 3.95571 4.07092 4.19669 4.25640 4.31274 4.41589 4.47340 4.52128 4.54934 4.72186 4.74045 4.83177 4.87029 4.93083 4.99016 5.09498 5.17892 5.20879 5.25492 5.29262 5.37857 5.52698 5.56569 5.64954 5.76063 5.86414 6.01402 6.12875 6.28197 6.60320 6.86367 7.38426 8.92419 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.016786 B = 0.003071 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.651253 B = 9114.760334 C = 9597.793952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.089 3.911 3 H 0.062 0.938 4 C -0.072 4.072 5 C -0.045 4.045 6 C -0.099 4.099 7 C -0.112 4.112 8 C -0.128 4.128 9 C -0.106 4.106 10 C -0.111 4.111 11 Br -0.058 7.058 12 N -0.677 5.677 13 C 0.079 3.921 14 C -0.088 4.088 15 C 0.025 3.975 16 C -0.540 4.540 17 H 0.060 0.940 18 C -0.002 4.002 19 N -0.935 5.935 20 Si 0.966 3.034 21 H -0.260 1.260 22 H -0.277 1.277 23 H -0.278 1.278 24 H 0.072 0.928 25 H 0.044 0.956 26 H 0.071 0.929 27 H 0.087 0.913 28 H 0.090 0.910 29 H 0.138 0.862 30 H 0.144 0.856 31 H 0.148 0.852 32 H 0.138 0.862 33 H 0.345 0.655 34 H 0.020 0.980 35 H 0.047 0.953 36 H 0.051 0.949 37 H 0.052 0.948 38 H -0.011 1.011 39 H -0.014 1.014 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.539 -4.643 25.174 25.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.021 4.021 3 H 0.080 0.920 4 C -0.109 4.109 5 C -0.047 4.047 6 C -0.117 4.117 7 C -0.130 4.130 8 C -0.147 4.147 9 C -0.126 4.126 10 C -0.190 4.190 11 Br 0.027 6.973 12 N -0.308 5.308 13 C -0.051 4.051 14 C -0.126 4.126 15 C -0.013 4.013 16 C -0.578 4.578 17 H 0.079 0.921 18 C -0.200 4.200 19 N -0.576 5.576 20 Si 0.790 3.210 21 H -0.184 1.184 22 H -0.203 1.203 23 H -0.204 1.204 24 H 0.091 0.909 25 H 0.063 0.937 26 H 0.090 0.910 27 H 0.105 0.895 28 H 0.108 0.892 29 H 0.156 0.844 30 H 0.161 0.839 31 H 0.166 0.834 32 H 0.155 0.845 33 H 0.164 0.836 34 H 0.039 0.961 35 H 0.066 0.934 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.008 0.992 39 H 0.005 0.995 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.789 -3.896 25.499 25.807 hybrid contribution -0.393 0.048 -1.465 1.517 sum 0.395 -3.848 24.034 24.343 Atomic orbital electron populations 1.22428 0.95786 1.02988 1.02277 1.21485 0.93289 0.97430 0.89857 0.92000 1.20771 0.89990 1.02630 0.97558 1.19784 0.96843 0.92547 0.95558 1.21204 0.93665 0.98939 0.97936 1.21603 0.95244 0.98577 0.97593 1.21409 1.01015 0.93584 0.98692 1.21268 0.91549 1.00024 0.99750 1.21888 0.94766 0.95307 1.07065 1.96628 1.68938 1.46802 1.84897 1.60542 1.57429 1.09603 1.03201 1.21738 0.98063 0.95020 0.90258 1.21327 1.00174 0.97924 0.93172 1.18973 0.94608 0.94493 0.93211 1.21723 1.43531 0.96902 0.95652 0.92128 1.26008 0.95686 0.95756 1.02503 1.70115 1.50003 1.10799 1.26671 0.85387 0.77967 0.79070 0.78561 1.18426 1.20313 1.20401 0.90919 0.93708 0.90989 0.89483 0.89186 0.84411 0.83859 0.83432 0.84451 0.83603 0.96133 0.93406 0.93056 0.92877 0.99243 0.99531 0.92816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.48 9.16 71.98 0.66 -2.82 16 2 C 0.09 2.07 2.56 44.91 0.12 2.19 16 3 H 0.06 1.69 7.34 -2.39 -0.02 1.67 16 4 C -0.07 -1.42 4.47 29.85 0.13 -1.28 16 5 C -0.05 -1.03 4.89 -19.85 -0.10 -1.13 16 6 C -0.10 -2.15 9.55 22.26 0.21 -1.94 16 7 C -0.11 -2.25 10.05 22.27 0.22 -2.03 16 8 C -0.13 -2.51 10.05 22.27 0.22 -2.29 16 9 C -0.11 -2.28 9.79 22.28 0.22 -2.06 16 10 C -0.11 -2.59 6.22 22.31 0.14 -2.45 16 11 Br -0.06 -1.25 31.42 -20.37 -0.64 -1.89 16 12 N -0.68 -18.26 5.85 -491.57 -2.88 -21.14 16 13 C 0.08 2.76 5.48 86.30 0.47 3.23 16 14 C -0.09 -3.69 5.41 30.59 0.17 -3.52 16 15 C 0.02 1.35 4.97 29.84 0.15 1.49 16 16 C -0.54 -31.38 9.11 25.60 0.23 -31.15 16 17 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 18 C 0.00 -0.13 5.46 84.65 0.46 0.34 16 19 N -0.94 -58.04 13.29 21.45 0.28 -57.75 16 20 Si 0.97 44.79 29.54 68.60 2.03 46.81 16 21 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 22 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 23 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 24 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 25 H 0.04 1.02 7.45 -2.38 -0.02 1.00 16 26 H 0.07 1.21 8.13 -2.38 -0.02 1.19 16 27 H 0.09 1.60 6.89 -2.39 -0.02 1.58 16 28 H 0.09 1.52 8.05 -2.39 -0.02 1.50 16 29 H 0.14 2.69 8.06 -2.91 -0.02 2.67 16 30 H 0.14 2.26 8.06 -2.91 -0.02 2.23 16 31 H 0.15 2.13 8.06 -2.91 -0.02 2.11 16 32 H 0.14 2.52 8.06 -2.91 -0.02 2.49 16 33 H 0.35 8.35 8.47 -89.69 -0.76 7.59 16 34 H 0.02 0.73 7.44 -2.39 -0.02 0.71 16 35 H 0.05 1.83 8.06 -2.39 -0.02 1.81 16 36 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 37 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 38 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 39 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 40 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 Total: -1.00 -65.75 349.41 2.35 -63.40 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: 0.25 Total: 13.99 kcal Atomic # 6 Polarization: -46.73 SS G_CDS: 3.31 Total: -43.42 kcal Atomic # 7 Polarization: -76.30 SS G_CDS: -2.59 Total: -78.89 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.81 kcal Atomic # 35 Polarization: -1.25 SS G_CDS: -0.64 Total: -1.89 kcal Total: -65.75 2.35 -63.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256830500.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.226 kcal (2) G-P(sol) polarization free energy of solvation -65.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds