Wall clock time and date at job start Tue Mar 31 2020 14:49:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 N 1.46895 * 109.46711 * 2 1
4 4 C 1.46897 * 111.00569 * 294.52715 * 3 2 1
5 5 C 1.50705 * 109.46877 * 295.68834 * 4 3 2
6 6 H 1.08001 * 119.99981 * 3.62611 * 5 4 3
7 7 C 1.37884 * 119.99980 * 183.62242 * 5 4 3
8 8 N 1.31512 * 119.99686 * 0.02562 * 7 5 4
9 9 Si 1.86798 * 119.99867 * 180.02562 * 7 5 4
10 10 H 1.48501 * 109.47351 * 90.00196 * 9 7 5
11 11 H 1.48498 * 109.46857 * 210.00054 * 9 7 5
12 12 H 1.48497 * 109.47133 * 329.99557 * 9 7 5
13 13 C 1.46900 * 111.00385 * 58.48392 * 3 2 1
14 14 H 1.09004 * 109.46867 * 294.68537 * 13 3 2
15 15 C 1.52992 * 109.47446 * 174.68489 * 13 3 2
16 16 C 1.53005 * 109.47187 * 54.67886 * 13 3 2
17 17 C 1.50695 * 109.47296 * 185.08216 * 16 13 3
18 18 C 1.38239 * 119.98830 * 84.56807 * 17 16 13
19 19 C 1.38218 * 120.00777 * 180.02562 * 18 17 16
20 20 C 1.38330 * 119.99298 * 0.25873 * 19 18 17
21 21 Br 1.89092 * 120.01453 * 179.72257 * 20 19 18
22 22 C 1.38333 * 119.97393 * 359.42095 * 20 19 18
23 23 C 1.38214 * 119.98830 * 0.60168 * 22 20 19
24 24 H 1.09003 * 109.46990 * 301.10032 * 1 2 3
25 25 H 1.08996 * 109.47617 * 61.10382 * 1 2 3
26 26 H 1.09005 * 109.47372 * 181.10310 * 1 2 3
27 27 H 1.09002 * 109.46611 * 240.00014 * 2 1 3
28 28 H 1.08999 * 109.47297 * 120.00236 * 2 1 3
29 29 H 1.09003 * 109.47111 * 55.68233 * 4 3 2
30 30 H 1.08990 * 109.47641 * 175.69005 * 4 3 2
31 31 H 0.96998 * 119.99587 * 180.02562 * 8 7 5
32 32 H 1.09002 * 109.47538 * 179.97438 * 15 13 3
33 33 H 1.09004 * 109.47127 * 299.99889 * 15 13 3
34 34 H 1.09002 * 109.47456 * 60.00180 * 15 13 3
35 35 H 1.09004 * 109.46320 * 65.07925 * 16 13 3
36 36 H 1.08998 * 109.47091 * 305.08699 * 16 13 3
37 37 H 1.07992 * 119.99783 * 0.02562 * 18 17 16
38 38 H 1.08002 * 120.00688 * 179.97438 * 19 18 17
39 39 H 1.08000 * 120.00518 * 180.29916 * 22 20 19
40 40 H 1.08002 * 119.99443 * 179.67862 * 23 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0196 1.3850 0.0000
4 6 1.6583 2.0712 -1.2476
5 6 2.3551 1.4060 -2.4066
6 1 2.9547 0.5230 -2.2416
7 6 2.2269 1.9246 -3.6777
8 7 1.4971 3.0001 -3.8786
9 14 3.0900 1.0997 -5.1144
10 1 2.1929 0.0770 -5.7098
11 1 3.4281 2.1190 -6.1401
12 1 4.3352 0.4476 -4.6355
13 6 1.5191 2.1203 1.1691
14 1 0.4355 2.2165 1.1013
15 6 2.1533 3.5121 1.2060
16 6 1.8846 1.3592 2.4451
17 6 1.2652 2.0463 3.6347
18 6 -0.0412 1.7676 3.9907
19 6 -0.6099 2.3980 5.0814
20 6 0.1266 3.3118 5.8136
21 35 -0.6534 4.1803 7.3012
22 6 1.4359 3.5853 5.4609
23 6 2.0036 2.9548 4.3698
24 1 -0.3633 0.5308 0.8800
25 1 -0.3634 0.4966 -0.8997
26 1 -0.3634 -1.0275 0.0198
27 1 1.8933 -0.5139 -0.8900
28 1 1.8934 -0.5139 0.8899
29 1 0.5793 2.0170 -1.3928
30 1 1.9652 3.1154 -1.1900
31 1 1.4067 3.3647 -4.7729
32 1 1.7817 4.0579 2.0733
33 1 3.2370 3.4159 1.2739
34 1 1.8929 4.0544 0.2970
35 1 2.9685 1.3413 2.5595
36 1 1.5093 0.3380 2.3792
37 1 -0.6175 1.0574 3.4166
38 1 -1.6307 2.1806 5.3593
39 1 2.0129 4.2951 6.0351
40 1 3.0242 3.1722 4.0912
RHF calculation, no. of doubly occupied orbitals= 50
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001257563281.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:49:40
Heat of formation + Delta-G solvation = 21.885661 kcal
Electronic energy + Delta-G solvation = -19763.085909 eV
Core-core repulsion = 16816.651503 eV
Total energy + Delta-G solvation = -2946.434405 eV
No. of doubly occupied orbitals = 50
Molecular weight
(most abundant/longest-lived isotopes) = 325.074 amu
Computer time = 0.33 seconds
Orbital eigenvalues (eV)
-39.72474 -37.82007 -33.90347 -32.51764 -31.49971 -31.14279 -30.02426 -28.47570
-26.53636 -25.72963 -23.07559 -22.84023 -22.13291 -20.81909 -18.51112 -16.76790
-16.32599 -15.62643 -15.55320 -14.99831 -14.73443 -14.37476 -13.79108 -13.63524
-13.45320 -13.02144 -12.77594 -12.25194 -12.13738 -11.89952 -11.74249 -11.54516
-11.30622 -11.19634 -10.97936 -10.93380 -10.77290 -10.66853 -10.50091 -10.45233
-10.21049 -9.94589 -9.63395 -9.13561 -9.11870 -8.56473 -8.41583 -7.16896
-6.02171 -4.02506 0.99176 1.20234 1.48081 3.31234 3.37865 3.41798
3.50956 4.41709 4.63974 4.69229 4.77780 5.12435 5.17475 5.25461
5.34235 5.44335 5.46380 5.55920 5.75113 5.81052 5.87406 5.93804
6.03330 6.07869 6.10401 6.16268 6.17853 6.24861 6.44864 6.52528
6.60068 6.71149 6.73712 6.79808 6.90272 7.36842 7.42854 7.81080
8.12824 8.24742 8.57981 9.04687 9.61077 11.08756
Molecular weight = 325.07amu
Principal moments of inertia in cm(-1)
A = 0.035368 B = 0.002479 C = 0.002434
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 791.484156 B =11294.300594 C =11501.676971
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.188 4.188
2 C 0.055 3.945
3 N -0.530 5.530
4 C 0.188 3.812
5 C -0.505 4.505
6 H 0.062 0.938
7 C 0.055 3.945
8 N -0.899 5.899
9 Si 0.895 3.105
10 H -0.282 1.282
11 H -0.287 1.287
12 H -0.273 1.273
13 C 0.087 3.913
14 H 0.034 0.966
15 C -0.145 4.145
16 C -0.084 4.084
17 C -0.048 4.048
18 C -0.113 4.113
19 C -0.089 4.089
20 C -0.100 4.100
21 Br -0.063 7.063
22 C -0.090 4.090
23 C -0.109 4.109
24 H 0.044 0.956
25 H 0.065 0.935
26 H 0.046 0.954
27 H 0.082 0.918
28 H 0.054 0.946
29 H -0.008 1.008
30 H 0.038 0.962
31 H 0.260 0.740
32 H 0.047 0.953
33 H 0.059 0.941
34 H 0.063 0.937
35 H 0.080 0.920
36 H 0.078 0.922
37 H 0.129 0.871
38 H 0.129 0.871
39 H 0.130 0.870
40 H 0.133 0.867
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.835 0.293 22.597 22.922
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.247 4.247
2 C -0.073 4.073
3 N -0.254 5.254
4 C 0.063 3.937
5 C -0.543 4.543
6 H 0.080 0.920
7 C -0.146 4.146
8 N -0.539 5.539
9 Si 0.723 3.277
10 H -0.208 1.208
11 H -0.213 1.213
12 H -0.198 1.198
13 C -0.021 4.021
14 H 0.052 0.948
15 C -0.202 4.202
16 C -0.121 4.121
17 C -0.048 4.048
18 C -0.132 4.132
19 C -0.109 4.109
20 C -0.179 4.179
21 Br 0.022 6.978
22 C -0.110 4.110
23 C -0.128 4.128
24 H 0.063 0.937
25 H 0.084 0.916
26 H 0.065 0.935
27 H 0.100 0.900
28 H 0.073 0.927
29 H 0.010 0.990
30 H 0.056 0.944
31 H 0.070 0.930
32 H 0.066 0.934
33 H 0.078 0.922
34 H 0.082 0.918
35 H 0.099 0.901
36 H 0.096 0.904
37 H 0.147 0.853
38 H 0.147 0.853
39 H 0.148 0.852
40 H 0.151 0.849
Dipole moment (debyes) X Y Z Total
from point charges -3.659 0.745 23.030 23.331
hybrid contribution -0.427 -0.466 -1.277 1.425
sum -4.086 0.280 21.753 22.135
Atomic orbital electron populations
1.22400 0.99586 1.00798 1.01935 1.22059 0.91954 0.91829 1.01472
1.62397 1.58516 1.01517 1.03004 1.19815 0.94392 0.94944 0.84555
1.21170 1.29744 1.12096 0.91315 0.91998 1.24971 0.95627 0.95095
0.98912 1.69955 1.40050 1.21898 1.21956 0.86541 0.79975 0.79038
0.82126 1.20829 1.21313 1.19809 1.21444 0.96751 0.93861 0.90090
0.94801 1.21908 1.01149 0.95782 1.01406 1.20884 1.01252 0.98877
0.91101 1.20179 0.93776 0.95189 0.95700 1.21101 0.95063 1.00421
0.96634 1.21067 0.99693 0.95243 0.94908 1.21703 0.96672 1.02340
0.97211 1.96679 1.82987 1.78451 1.39680 1.21086 0.93176 0.99492
0.97249 1.21148 1.00575 0.96453 0.94633 0.93686 0.91617 0.93508
0.89992 0.92718 0.99022 0.94448 0.92993 0.93385 0.92224 0.91757
0.90113 0.90378 0.85260 0.85302 0.85249 0.84945
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.19 -3.19 9.18 37.16 0.34 -2.85 16
2 C 0.06 1.01 5.35 -3.83 -0.02 0.99 16
3 N -0.53 -10.77 4.58 -228.09 -1.05 -11.82 16
4 C 0.19 4.70 4.35 -4.97 -0.02 4.68 16
5 C -0.50 -13.82 8.50 -34.44 -0.29 -14.11 16
6 H 0.06 1.68 6.87 -52.49 -0.36 1.32 16
7 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16
8 N -0.90 -26.39 13.29 55.43 0.74 -25.66 16
9 Si 0.90 21.43 29.54 -169.99 -5.02 16.41 16
10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16
11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16
12 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16
13 C 0.09 1.47 1.54 -67.71 -0.10 1.37 16
14 H 0.03 0.61 6.56 -51.93 -0.34 0.27 16
15 C -0.15 -2.41 8.67 37.15 0.32 -2.09 16
16 C -0.08 -1.13 4.54 -27.88 -0.13 -1.25 16
17 C -0.05 -0.58 4.55 -104.62 -0.48 -1.05 16
18 C -0.11 -1.31 9.72 -39.59 -0.38 -1.69 16
19 C -0.09 -0.97 9.79 -39.55 -0.39 -1.36 16
20 C -0.10 -1.10 6.22 -39.51 -0.25 -1.35 16
21 Br -0.06 -0.63 33.70 -68.01 -2.29 -2.92 16
22 C -0.09 -0.96 9.79 -39.56 -0.39 -1.35 16
23 C -0.11 -1.22 8.39 -39.59 -0.33 -1.55 16
24 H 0.04 0.70 6.40 -51.93 -0.33 0.36 16
25 H 0.06 1.31 6.50 -51.93 -0.34 0.97 16
26 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16
27 H 0.08 1.66 6.53 -51.93 -0.34 1.32 16
28 H 0.05 0.86 6.20 -51.93 -0.32 0.54 16
29 H -0.01 -0.21 6.28 -51.93 -0.33 -0.54 16
30 H 0.04 1.01 5.95 -51.93 -0.31 0.70 16
31 H 0.26 7.26 8.31 -40.82 -0.34 6.93 16
32 H 0.05 0.70 6.54 -51.93 -0.34 0.36 16
33 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16
34 H 0.06 1.22 6.26 -51.93 -0.33 0.90 16
35 H 0.08 1.08 8.05 -51.93 -0.42 0.66 16
36 H 0.08 1.02 6.01 -51.93 -0.31 0.71 16
37 H 0.13 1.37 8.06 -52.49 -0.42 0.94 16
38 H 0.13 1.20 8.06 -52.49 -0.42 0.77 16
39 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16
40 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16
LS Contribution 333.46 15.07 5.03 5.03
Total: -1.00 -28.70 333.46 -10.54 -39.25
By element:
Atomic # 1 Polarization: 5.63 SS G_CDS: -5.73 Total: -0.10 kcal
Atomic # 6 Polarization: -17.97 SS G_CDS: -2.21 Total: -20.19 kcal
Atomic # 7 Polarization: -37.17 SS G_CDS: -0.31 Total: -37.48 kcal
Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal
Atomic # 35 Polarization: -0.63 SS G_CDS: -2.29 Total: -2.92 kcal
Total LS contribution 5.03 Total: 5.03 kcal
Total: -28.70 -10.54 -39.25 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001257563281.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 61.134 kcal
(2) G-P(sol) polarization free energy of solvation -28.705 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.430 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.544 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.249 kcal
(6) G-S(sol) free energy of system = (1) + (5) 21.886 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.33 seconds