Wall clock time and date at job start Tue Mar 31 2020 14:49:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 N 1.46895 * 109.46711 * 2 1
4 4 C 1.46897 * 111.00569 * 294.52715 * 3 2 1
5 5 C 1.50705 * 109.46877 * 295.68834 * 4 3 2
6 6 H 1.08001 * 119.99981 * 3.62611 * 5 4 3
7 7 C 1.37884 * 119.99980 * 183.62242 * 5 4 3
8 8 N 1.31512 * 119.99686 * 0.02562 * 7 5 4
9 9 Si 1.86798 * 119.99867 * 180.02562 * 7 5 4
10 10 H 1.48501 * 109.47351 * 90.00196 * 9 7 5
11 11 H 1.48498 * 109.46857 * 210.00054 * 9 7 5
12 12 H 1.48497 * 109.47133 * 329.99557 * 9 7 5
13 13 C 1.46900 * 111.00385 * 58.48392 * 3 2 1
14 14 H 1.09004 * 109.46867 * 294.68537 * 13 3 2
15 15 C 1.52992 * 109.47446 * 174.68489 * 13 3 2
16 16 C 1.53005 * 109.47187 * 54.67886 * 13 3 2
17 17 C 1.50695 * 109.47296 * 185.08216 * 16 13 3
18 18 C 1.38239 * 119.98830 * 84.56807 * 17 16 13
19 19 C 1.38218 * 120.00777 * 180.02562 * 18 17 16
20 20 C 1.38330 * 119.99298 * 0.25873 * 19 18 17
21 21 Br 1.89092 * 120.01453 * 179.72257 * 20 19 18
22 22 C 1.38333 * 119.97393 * 359.42095 * 20 19 18
23 23 C 1.38214 * 119.98830 * 0.60168 * 22 20 19
24 24 H 1.09003 * 109.46990 * 301.10032 * 1 2 3
25 25 H 1.08996 * 109.47617 * 61.10382 * 1 2 3
26 26 H 1.09005 * 109.47372 * 181.10310 * 1 2 3
27 27 H 1.09002 * 109.46611 * 240.00014 * 2 1 3
28 28 H 1.08999 * 109.47297 * 120.00236 * 2 1 3
29 29 H 1.09003 * 109.47111 * 55.68233 * 4 3 2
30 30 H 1.08990 * 109.47641 * 175.69005 * 4 3 2
31 31 H 0.96998 * 119.99587 * 180.02562 * 8 7 5
32 32 H 1.09002 * 109.47538 * 179.97438 * 15 13 3
33 33 H 1.09004 * 109.47127 * 299.99889 * 15 13 3
34 34 H 1.09002 * 109.47456 * 60.00180 * 15 13 3
35 35 H 1.09004 * 109.46320 * 65.07925 * 16 13 3
36 36 H 1.08998 * 109.47091 * 305.08699 * 16 13 3
37 37 H 1.07992 * 119.99783 * 0.02562 * 18 17 16
38 38 H 1.08002 * 120.00688 * 179.97438 * 19 18 17
39 39 H 1.08000 * 120.00518 * 180.29916 * 22 20 19
40 40 H 1.08002 * 119.99443 * 179.67862 * 23 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0196 1.3850 0.0000
4 6 1.6583 2.0712 -1.2476
5 6 2.3551 1.4060 -2.4066
6 1 2.9547 0.5230 -2.2416
7 6 2.2269 1.9246 -3.6777
8 7 1.4971 3.0001 -3.8786
9 14 3.0900 1.0997 -5.1144
10 1 2.1929 0.0770 -5.7098
11 1 3.4281 2.1190 -6.1401
12 1 4.3352 0.4476 -4.6355
13 6 1.5191 2.1203 1.1691
14 1 0.4355 2.2165 1.1013
15 6 2.1533 3.5121 1.2060
16 6 1.8846 1.3592 2.4451
17 6 1.2652 2.0463 3.6347
18 6 -0.0412 1.7676 3.9907
19 6 -0.6099 2.3980 5.0814
20 6 0.1266 3.3118 5.8136
21 35 -0.6534 4.1803 7.3012
22 6 1.4359 3.5853 5.4609
23 6 2.0036 2.9548 4.3698
24 1 -0.3633 0.5308 0.8800
25 1 -0.3634 0.4966 -0.8997
26 1 -0.3634 -1.0275 0.0198
27 1 1.8933 -0.5139 -0.8900
28 1 1.8934 -0.5139 0.8899
29 1 0.5793 2.0170 -1.3928
30 1 1.9652 3.1154 -1.1900
31 1 1.4067 3.3647 -4.7729
32 1 1.7817 4.0579 2.0733
33 1 3.2370 3.4159 1.2739
34 1 1.8929 4.0544 0.2970
35 1 2.9685 1.3413 2.5595
36 1 1.5093 0.3380 2.3792
37 1 -0.6175 1.0574 3.4166
38 1 -1.6307 2.1806 5.3593
39 1 2.0129 4.2951 6.0351
40 1 3.0242 3.1722 4.0912
RHF calculation, no. of doubly occupied orbitals= 50
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001257563281.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:49:40
Heat of formation + Delta-G solvation = 6.959367 kcal
Electronic energy + Delta-G solvation = -19763.733161 eV
Core-core repulsion = 16816.651503 eV
Total energy + Delta-G solvation = -2947.081658 eV
No. of doubly occupied orbitals = 50
Molecular weight
(most abundant/longest-lived isotopes) = 325.074 amu
Computer time = 0.38 seconds
Orbital eigenvalues (eV)
-40.71295 -39.21269 -35.30022 -34.32062 -32.61820 -31.99155 -31.30365 -29.93038
-28.07707 -27.15454 -24.67817 -23.90643 -23.41288 -21.97101 -19.97215 -18.39390
-17.73032 -16.85374 -16.67951 -16.55839 -16.05838 -15.74698 -15.20611 -14.89999
-14.41265 -14.29086 -13.85051 -13.83965 -13.61460 -13.33096 -13.20888 -13.08203
-12.71420 -12.61770 -12.43293 -12.33449 -12.09867 -11.97422 -11.88979 -11.73947
-11.48158 -11.24481 -11.13268 -11.12243 -10.54850 -9.95920 -9.47234 -8.84990
-8.16581 -6.24699 0.11639 0.36955 0.66146 1.41417 1.42499 1.53817
2.41992 2.63611 3.15701 3.34295 3.80063 3.98299 4.00020 4.11082
4.16457 4.30973 4.42040 4.42989 4.52168 4.54828 4.69337 4.73994
4.79969 4.86896 4.98183 5.04101 5.06487 5.08744 5.24411 5.26760
5.28540 5.32962 5.37072 5.46670 5.54985 5.67238 5.71952 5.88472
6.13545 6.47281 6.76420 6.92699 7.44085 8.94381
Molecular weight = 325.07amu
Principal moments of inertia in cm(-1)
A = 0.035368 B = 0.002479 C = 0.002434
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 791.484156 B =11294.300594 C =11501.676971
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.179 4.179
2 C 0.054 3.946
3 N -0.537 5.537
4 C 0.205 3.795
5 C -0.517 4.517
6 H 0.062 0.938
7 C 0.000 4.000
8 N -0.936 5.936
9 Si 0.964 3.036
10 H -0.275 1.275
11 H -0.285 1.285
12 H -0.264 1.264
13 C 0.088 3.912
14 H 0.023 0.977
15 C -0.138 4.138
16 C -0.070 4.070
17 C -0.060 4.060
18 C -0.119 4.119
19 C -0.094 4.094
20 C -0.108 4.108
21 Br -0.054 7.054
22 C -0.093 4.093
23 C -0.112 4.112
24 H 0.060 0.940
25 H 0.026 0.974
26 H 0.073 0.927
27 H 0.058 0.942
28 H 0.090 0.910
29 H -0.036 1.036
30 H 0.011 0.989
31 H 0.262 0.738
32 H 0.070 0.930
33 H 0.062 0.938
34 H 0.029 0.971
35 H 0.085 0.915
36 H 0.085 0.915
37 H 0.137 0.863
38 H 0.143 0.857
39 H 0.146 0.854
40 H 0.144 0.856
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.379 -0.754 24.096 24.344
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.237 4.237
2 C -0.074 4.074
3 N -0.261 5.261
4 C 0.079 3.921
5 C -0.555 4.555
6 H 0.080 0.920
7 C -0.197 4.197
8 N -0.577 5.577
9 Si 0.789 3.211
10 H -0.200 1.200
11 H -0.210 1.210
12 H -0.189 1.189
13 C -0.020 4.020
14 H 0.041 0.959
15 C -0.196 4.196
16 C -0.107 4.107
17 C -0.061 4.061
18 C -0.138 4.138
19 C -0.114 4.114
20 C -0.187 4.187
21 Br 0.031 6.969
22 C -0.113 4.113
23 C -0.131 4.131
24 H 0.079 0.921
25 H 0.045 0.955
26 H 0.091 0.909
27 H 0.076 0.924
28 H 0.108 0.892
29 H -0.018 1.018
30 H 0.029 0.971
31 H 0.071 0.929
32 H 0.089 0.911
33 H 0.081 0.919
34 H 0.048 0.952
35 H 0.104 0.896
36 H 0.104 0.896
37 H 0.155 0.845
38 H 0.161 0.839
39 H 0.163 0.837
40 H 0.162 0.838
Dipole moment (debyes) X Y Z Total
from point charges -3.201 -0.317 24.554 24.764
hybrid contribution -0.612 -0.106 -1.633 1.747
sum -3.813 -0.423 22.921 23.240
Atomic orbital electron populations
1.22288 0.98585 1.02188 1.00687 1.22115 0.92816 0.90503 1.01985
1.62298 1.59084 1.02518 1.02206 1.19409 0.92256 0.93843 0.86617
1.21514 1.29565 1.12079 0.92387 0.91995 1.25859 0.96334 0.95669
1.01844 1.70088 1.41534 1.23421 1.22624 0.85463 0.79067 0.78064
0.78521 1.20025 1.21029 1.18875 1.21504 0.95988 0.94139 0.90368
0.95895 1.21839 1.01368 0.95706 1.00637 1.20700 1.01681 0.98741
0.89569 1.20080 0.94267 0.96059 0.95680 1.21245 0.94961 1.00649
0.96903 1.21258 1.00405 0.95051 0.94666 1.21912 0.96991 1.02316
0.97499 1.96690 1.82864 1.78243 1.39122 1.21301 0.93244 0.99570
0.97174 1.21309 1.01108 0.96043 0.94602 0.92146 0.95469 0.90854
0.92359 0.89204 1.01825 0.97138 0.92924 0.91117 0.91938 0.95151
0.89640 0.89623 0.84493 0.83934 0.83659 0.83819
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -5.94 9.18 71.98 0.66 -5.28 16
2 C 0.05 1.92 5.35 86.30 0.46 2.38 16
3 N -0.54 -21.97 4.58 -875.54 -4.01 -25.98 16
4 C 0.20 10.68 4.35 85.56 0.37 11.05 16
5 C -0.52 -28.98 8.50 25.60 0.22 -28.76 16
6 H 0.06 3.40 6.87 -2.91 -0.02 3.38 16
7 C 0.00 0.03 5.46 84.66 0.46 0.49 16
8 N -0.94 -56.51 13.29 21.45 0.28 -56.22 16
9 Si 0.96 44.34 29.54 68.60 2.03 46.36 16
10 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16
11 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16
12 H -0.26 -11.69 7.11 99.48 0.71 -10.99 16
13 C 0.09 2.94 1.54 44.91 0.07 3.01 16
14 H 0.02 0.83 6.56 -2.39 -0.02 0.81 16
15 C -0.14 -4.60 8.67 71.98 0.62 -3.98 16
16 C -0.07 -1.73 4.54 29.85 0.14 -1.60 16
17 C -0.06 -1.33 4.55 -19.87 -0.09 -1.42 16
18 C -0.12 -2.49 9.72 22.27 0.22 -2.27 16
19 C -0.09 -1.86 9.79 22.29 0.22 -1.64 16
20 C -0.11 -2.15 6.22 22.31 0.14 -2.02 16
21 Br -0.05 -0.98 33.70 -20.37 -0.69 -1.67 16
22 C -0.09 -1.78 9.79 22.29 0.22 -1.56 16
23 C -0.11 -2.25 8.39 22.26 0.19 -2.06 16
24 H 0.06 1.80 6.40 -2.39 -0.02 1.78 16
25 H 0.03 1.09 6.50 -2.39 -0.02 1.08 16
26 H 0.07 2.02 8.14 -2.38 -0.02 2.00 16
27 H 0.06 2.35 6.53 -2.39 -0.02 2.34 16
28 H 0.09 2.59 6.20 -2.39 -0.01 2.58 16
29 H -0.04 -2.03 6.28 -2.39 -0.01 -2.05 16
30 H 0.01 0.60 5.95 -2.39 -0.01 0.59 16
31 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16
32 H 0.07 1.99 6.54 -2.39 -0.02 1.98 16
33 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16
34 H 0.03 1.20 6.26 -2.39 -0.01 1.18 16
35 H 0.09 2.07 8.05 -2.39 -0.02 2.05 16
36 H 0.09 2.00 6.01 -2.39 -0.01 1.98 16
37 H 0.14 2.59 8.06 -2.91 -0.02 2.57 16
38 H 0.14 2.34 8.06 -2.91 -0.02 2.32 16
39 H 0.15 2.24 8.06 -2.91 -0.02 2.22 16
40 H 0.14 2.51 8.06 -2.91 -0.02 2.49 16
Total: -1.00 -62.93 333.46 2.53 -60.40
By element:
Atomic # 1 Polarization: 9.73 SS G_CDS: 1.03 Total: 10.76 kcal
Atomic # 6 Polarization: -37.54 SS G_CDS: 3.89 Total: -33.65 kcal
Atomic # 7 Polarization: -78.48 SS G_CDS: -3.73 Total: -82.21 kcal
Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.36 kcal
Atomic # 35 Polarization: -0.98 SS G_CDS: -0.69 Total: -1.67 kcal
Total: -62.93 2.53 -60.40 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001257563281.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 67.361 kcal
(2) G-P(sol) polarization free energy of solvation -62.932 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.429 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.531 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.401 kcal
(6) G-S(sol) free energy of system = (1) + (5) 6.959 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.38 seconds