Wall clock time and date at job start Tue Mar 31 2020 14:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46899 * 109.47270 * 2 1 4 4 C 1.46893 * 111.00350 * 73.01556 * 3 2 1 5 5 C 1.50703 * 109.47125 * 285.55914 * 4 3 2 6 6 H 1.07993 * 119.99682 * 358.17516 * 5 4 3 7 7 C 1.37875 * 119.99663 * 178.17318 * 5 4 3 8 8 N 1.31514 * 120.00481 * 0.02562 * 7 5 4 9 9 Si 1.86807 * 119.99823 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46782 * 89.99901 * 9 7 5 11 11 H 1.48496 * 109.47352 * 209.99995 * 9 7 5 12 12 H 1.48498 * 109.46868 * 330.00623 * 9 7 5 13 13 C 1.46905 * 110.99801 * 196.97341 * 3 2 1 14 14 H 1.09000 * 109.46701 * 186.04614 * 13 3 2 15 15 C 1.52993 * 109.47010 * 306.04240 * 13 3 2 16 16 C 1.52999 * 109.47419 * 66.04324 * 13 3 2 17 17 C 1.50702 * 109.46869 * 64.99970 * 16 13 3 18 18 C 1.38243 * 119.99079 * 269.72356 * 17 16 13 19 19 C 1.38217 * 120.01349 * 179.76941 * 18 17 16 20 20 C 1.38322 * 119.98565 * 0.51036 * 19 18 17 21 21 Br 1.89109 * 120.00975 * 179.72391 * 20 19 18 22 22 C 1.38322 * 119.98328 * 359.74413 * 20 19 18 23 23 C 1.38219 * 119.98931 * 359.97438 * 22 20 19 24 24 H 1.09004 * 109.47064 * 288.71047 * 1 2 3 25 25 H 1.09001 * 109.46767 * 48.71023 * 1 2 3 26 26 H 1.09005 * 109.47211 * 168.71220 * 1 2 3 27 27 H 1.09004 * 109.47235 * 239.99470 * 2 1 3 28 28 H 1.09008 * 109.47317 * 119.99889 * 2 1 3 29 29 H 1.09005 * 109.47068 * 45.55567 * 4 3 2 30 30 H 1.08998 * 109.47719 * 165.55562 * 4 3 2 31 31 H 0.96997 * 120.00394 * 179.97438 * 8 7 5 32 32 H 1.09008 * 109.47045 * 180.02562 * 15 13 3 33 33 H 1.09001 * 109.47226 * 299.99992 * 15 13 3 34 34 H 1.08993 * 109.47632 * 60.00205 * 15 13 3 35 35 H 1.09000 * 109.47089 * 184.99456 * 16 13 3 36 36 H 1.08996 * 109.47268 * 305.00008 * 16 13 3 37 37 H 1.08005 * 119.98948 * 0.02562 * 18 17 16 38 38 H 1.07997 * 120.00652 * 180.23250 * 19 18 17 39 39 H 1.08003 * 120.01207 * 180.02562 * 22 20 19 40 40 H 1.08000 * 119.99752 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8175 2.0149 1.3115 5 6 0.3580 2.3446 1.4908 6 1 -0.3440 2.1366 0.6970 7 6 -0.0810 2.9116 2.6684 8 7 0.7740 3.1653 3.6350 9 14 -1.8901 3.3209 2.8905 10 1 -2.5929 2.1534 3.4804 11 1 -2.0256 4.4898 3.7963 12 1 -2.4898 3.6448 1.5711 13 6 3.4319 1.4440 -0.4004 14 1 3.7987 2.4643 -0.2889 15 6 4.2532 0.5070 0.4874 16 6 3.5664 1.0103 -1.8614 17 6 2.8590 2.0033 -2.7473 18 6 1.5255 1.8207 -3.0627 19 6 0.8750 2.7337 -3.8712 20 6 1.5613 3.8246 -4.3734 21 35 0.6740 5.0699 -5.4860 22 6 2.8970 4.0041 -4.0618 23 6 3.5452 3.0937 -3.2485 24 1 -0.3633 0.3297 0.9734 25 1 -0.3633 0.6781 -0.7722 26 1 -0.3634 -1.0078 -0.2012 27 1 1.8934 -0.5139 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 2.1341 1.3285 2.0969 30 1 2.4066 2.9301 1.3698 31 1 0.4652 3.5646 4.4633 32 1 5.3012 0.5511 0.1906 33 1 4.1575 0.8159 1.5283 34 1 3.8864 -0.5133 0.3761 35 1 4.6213 0.9687 -2.1324 36 1 3.1189 0.0249 -1.9906 37 1 0.9908 0.9666 -2.6739 38 1 -0.1677 2.5929 -4.1145 39 1 3.4333 4.8560 -4.4533 40 1 4.5881 3.2336 -3.0055 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001257563282.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:42 Heat of formation + Delta-G solvation = 23.465090 kcal Electronic energy + Delta-G solvation = -20263.712325 eV Core-core repulsion = 17317.346409 eV Total energy + Delta-G solvation = -2946.365916 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 325.074 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.40813 -37.68440 -33.69260 -32.38901 -31.43870 -30.80556 -29.79286 -28.63950 -26.41106 -25.81234 -22.68485 -22.34044 -22.05562 -20.83165 -18.70541 -16.58169 -16.26354 -15.66649 -15.03401 -14.71062 -14.45489 -14.13747 -13.83802 -13.41236 -13.24025 -13.07594 -12.69447 -12.08283 -11.99708 -11.89707 -11.79041 -11.30125 -11.15186 -10.97303 -10.94737 -10.77939 -10.72113 -10.51641 -10.35200 -10.21983 -10.17757 -10.13986 -9.39854 -9.02860 -8.76904 -8.36123 -8.27128 -7.19413 -5.98601 -3.96704 1.34006 1.57045 1.77650 3.32643 3.39814 3.43910 3.86043 4.44192 4.81374 4.97670 5.05544 5.09468 5.35766 5.38125 5.49226 5.58080 5.63894 5.77243 5.77956 5.86662 5.91519 6.09592 6.10117 6.18257 6.21320 6.35006 6.39589 6.42790 6.47912 6.60126 6.63267 6.85160 6.90876 7.07774 7.22916 7.38336 7.39573 7.88332 8.16633 8.25151 8.60217 9.09583 9.65083 11.12139 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.012001 B = 0.004387 C = 0.003563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2332.592343 B = 6381.188700 C = 7857.540922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.063 3.937 3 N -0.524 5.524 4 C 0.195 3.805 5 C -0.500 4.500 6 H 0.073 0.927 7 C 0.053 3.947 8 N -0.901 5.901 9 Si 0.890 3.110 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.273 1.273 13 C 0.084 3.916 14 H 0.076 0.924 15 C -0.182 4.182 16 C -0.078 4.078 17 C -0.038 4.038 18 C -0.080 4.080 19 C -0.090 4.090 20 C -0.097 4.097 21 Br -0.070 7.070 22 C -0.095 4.095 23 C -0.118 4.118 24 H 0.086 0.914 25 H 0.054 0.946 26 H 0.029 0.971 27 H 0.049 0.951 28 H 0.023 0.977 29 H -0.006 1.006 30 H 0.023 0.977 31 H 0.259 0.741 32 H 0.048 0.952 33 H 0.061 0.939 34 H 0.053 0.947 35 H 0.069 0.931 36 H 0.074 0.926 37 H 0.131 0.869 38 H 0.126 0.874 39 H 0.125 0.875 40 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.828 -1.820 -17.230 17.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.065 4.065 3 N -0.248 5.248 4 C 0.070 3.930 5 C -0.538 4.538 6 H 0.091 0.909 7 C -0.148 4.148 8 N -0.541 5.541 9 Si 0.718 3.282 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.198 1.198 13 C -0.025 4.025 14 H 0.095 0.905 15 C -0.241 4.241 16 C -0.115 4.115 17 C -0.038 4.038 18 C -0.099 4.099 19 C -0.110 4.110 20 C -0.176 4.176 21 Br 0.015 6.985 22 C -0.115 4.115 23 C -0.137 4.137 24 H 0.105 0.895 25 H 0.073 0.927 26 H 0.048 0.952 27 H 0.067 0.933 28 H 0.041 0.959 29 H 0.012 0.988 30 H 0.041 0.959 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.080 0.920 34 H 0.072 0.928 35 H 0.088 0.912 36 H 0.092 0.908 37 H 0.149 0.851 38 H 0.144 0.856 39 H 0.143 0.857 40 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 4.219 -0.999 -17.811 18.331 hybrid contribution -0.305 -0.301 1.278 1.348 sum 3.914 -1.300 -16.532 17.039 Atomic orbital electron populations 1.22076 0.95330 0.98463 1.04721 1.21908 0.96349 0.90100 0.98159 1.62372 1.13539 1.15681 1.33243 1.19725 0.97356 0.93376 0.82522 1.21393 0.93377 1.38988 1.00064 0.90894 1.24984 0.97489 0.96135 0.96182 1.69955 1.33995 1.44324 1.05851 0.86613 0.85593 0.77877 0.78077 1.20837 1.21404 1.19757 1.21656 0.90166 0.98907 0.91815 0.90541 1.22473 0.99662 1.00474 1.01496 1.20822 0.99133 0.97473 0.94098 1.19857 0.94159 0.95286 0.94510 1.21024 0.93919 0.99361 0.95567 1.21055 0.99704 0.93161 0.97097 1.21624 0.95719 0.97114 1.03129 1.96637 1.78572 1.58038 1.65266 1.20936 0.92693 0.99381 0.98461 1.20979 1.00051 0.94550 0.98139 0.89524 0.92722 0.95237 0.93272 0.95876 0.98809 0.95933 0.93118 0.93244 0.91983 0.92771 0.91218 0.90756 0.85073 0.85575 0.85732 0.85745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.72 8.50 37.16 0.32 -2.40 16 2 C 0.06 1.12 4.36 -3.82 -0.02 1.10 16 3 N -0.52 -10.25 3.82 -228.08 -0.87 -11.12 16 4 C 0.20 4.83 4.11 -4.98 -0.02 4.81 16 5 C -0.50 -13.40 7.08 -34.44 -0.24 -13.64 16 6 H 0.07 1.92 5.58 -52.49 -0.29 1.63 16 7 C 0.05 1.47 5.46 -17.82 -0.10 1.37 16 8 N -0.90 -26.50 13.29 55.43 0.74 -25.76 16 9 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 12 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 13 C 0.08 1.37 2.29 -67.71 -0.15 1.22 16 14 H 0.08 1.35 7.84 -51.93 -0.41 0.94 16 15 C -0.18 -2.75 8.52 37.15 0.32 -2.43 16 16 C -0.08 -1.02 4.77 -27.88 -0.13 -1.16 16 17 C -0.04 -0.53 4.95 -104.62 -0.52 -1.05 16 18 C -0.08 -1.17 9.32 -39.59 -0.37 -1.54 16 19 C -0.09 -1.29 9.79 -39.56 -0.39 -1.68 16 20 C -0.10 -1.35 6.22 -39.52 -0.25 -1.60 16 21 Br -0.07 -0.89 33.70 -68.01 -2.29 -3.18 16 22 C -0.09 -1.25 9.79 -39.56 -0.39 -1.64 16 23 C -0.12 -1.55 9.70 -39.59 -0.38 -1.94 16 24 H 0.09 1.87 5.76 -51.93 -0.30 1.57 16 25 H 0.05 1.01 7.59 -51.93 -0.39 0.61 16 26 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.75 5.85 -51.93 -0.30 0.44 16 28 H 0.02 0.44 6.96 -51.92 -0.36 0.08 16 29 H -0.01 -0.16 7.17 -51.93 -0.37 -0.53 16 30 H 0.02 0.61 7.76 -51.93 -0.40 0.21 16 31 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 32 H 0.05 0.63 8.14 -51.92 -0.42 0.20 16 33 H 0.06 1.08 7.13 -51.93 -0.37 0.71 16 34 H 0.05 0.78 6.71 -51.93 -0.35 0.43 16 35 H 0.07 0.77 8.09 -51.93 -0.42 0.35 16 36 H 0.07 0.94 6.04 -51.93 -0.31 0.63 16 37 H 0.13 1.89 7.85 -52.48 -0.41 1.48 16 38 H 0.13 1.65 8.06 -52.49 -0.42 1.22 16 39 H 0.12 1.41 8.06 -52.48 -0.42 0.99 16 40 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 LS Contribution 335.61 15.07 5.06 5.06 Total: -1.00 -28.54 335.61 -10.66 -39.20 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: -5.95 Total: -0.13 kcal Atomic # 6 Polarization: -18.25 SS G_CDS: -2.32 Total: -20.57 kcal Atomic # 7 Polarization: -36.74 SS G_CDS: -0.14 Total: -36.88 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 35 Polarization: -0.89 SS G_CDS: -2.29 Total: -3.18 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -28.54 -10.66 -39.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257563282.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.665 kcal (2) G-P(sol) polarization free energy of solvation -28.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.200 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds