Wall clock time and date at job start Tue Mar 31 2020 14:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46899 * 109.47270 * 2 1 4 4 C 1.46893 * 111.00350 * 73.01556 * 3 2 1 5 5 C 1.50703 * 109.47125 * 285.55914 * 4 3 2 6 6 H 1.07993 * 119.99682 * 358.17516 * 5 4 3 7 7 C 1.37875 * 119.99663 * 178.17318 * 5 4 3 8 8 N 1.31514 * 120.00481 * 0.02562 * 7 5 4 9 9 Si 1.86807 * 119.99823 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46782 * 89.99901 * 9 7 5 11 11 H 1.48496 * 109.47352 * 209.99995 * 9 7 5 12 12 H 1.48498 * 109.46868 * 330.00623 * 9 7 5 13 13 C 1.46905 * 110.99801 * 196.97341 * 3 2 1 14 14 H 1.09000 * 109.46701 * 186.04614 * 13 3 2 15 15 C 1.52993 * 109.47010 * 306.04240 * 13 3 2 16 16 C 1.52999 * 109.47419 * 66.04324 * 13 3 2 17 17 C 1.50702 * 109.46869 * 64.99970 * 16 13 3 18 18 C 1.38243 * 119.99079 * 269.72356 * 17 16 13 19 19 C 1.38217 * 120.01349 * 179.76941 * 18 17 16 20 20 C 1.38322 * 119.98565 * 0.51036 * 19 18 17 21 21 Br 1.89109 * 120.00975 * 179.72391 * 20 19 18 22 22 C 1.38322 * 119.98328 * 359.74413 * 20 19 18 23 23 C 1.38219 * 119.98931 * 359.97438 * 22 20 19 24 24 H 1.09004 * 109.47064 * 288.71047 * 1 2 3 25 25 H 1.09001 * 109.46767 * 48.71023 * 1 2 3 26 26 H 1.09005 * 109.47211 * 168.71220 * 1 2 3 27 27 H 1.09004 * 109.47235 * 239.99470 * 2 1 3 28 28 H 1.09008 * 109.47317 * 119.99889 * 2 1 3 29 29 H 1.09005 * 109.47068 * 45.55567 * 4 3 2 30 30 H 1.08998 * 109.47719 * 165.55562 * 4 3 2 31 31 H 0.96997 * 120.00394 * 179.97438 * 8 7 5 32 32 H 1.09008 * 109.47045 * 180.02562 * 15 13 3 33 33 H 1.09001 * 109.47226 * 299.99992 * 15 13 3 34 34 H 1.08993 * 109.47632 * 60.00205 * 15 13 3 35 35 H 1.09000 * 109.47089 * 184.99456 * 16 13 3 36 36 H 1.08996 * 109.47268 * 305.00008 * 16 13 3 37 37 H 1.08005 * 119.98948 * 0.02562 * 18 17 16 38 38 H 1.07997 * 120.00652 * 180.23250 * 19 18 17 39 39 H 1.08003 * 120.01207 * 180.02562 * 22 20 19 40 40 H 1.08000 * 119.99752 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8175 2.0149 1.3115 5 6 0.3580 2.3446 1.4908 6 1 -0.3440 2.1366 0.6970 7 6 -0.0810 2.9116 2.6684 8 7 0.7740 3.1653 3.6350 9 14 -1.8901 3.3209 2.8905 10 1 -2.5929 2.1534 3.4804 11 1 -2.0256 4.4898 3.7963 12 1 -2.4898 3.6448 1.5711 13 6 3.4319 1.4440 -0.4004 14 1 3.7987 2.4643 -0.2889 15 6 4.2532 0.5070 0.4874 16 6 3.5664 1.0103 -1.8614 17 6 2.8590 2.0033 -2.7473 18 6 1.5255 1.8207 -3.0627 19 6 0.8750 2.7337 -3.8712 20 6 1.5613 3.8246 -4.3734 21 35 0.6740 5.0699 -5.4860 22 6 2.8970 4.0041 -4.0618 23 6 3.5452 3.0937 -3.2485 24 1 -0.3633 0.3297 0.9734 25 1 -0.3633 0.6781 -0.7722 26 1 -0.3634 -1.0078 -0.2012 27 1 1.8934 -0.5139 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 2.1341 1.3285 2.0969 30 1 2.4066 2.9301 1.3698 31 1 0.4652 3.5646 4.4633 32 1 5.3012 0.5511 0.1906 33 1 4.1575 0.8159 1.5283 34 1 3.8864 -0.5133 0.3761 35 1 4.6213 0.9687 -2.1324 36 1 3.1189 0.0249 -1.9906 37 1 0.9908 0.9666 -2.6739 38 1 -0.1677 2.5929 -4.1145 39 1 3.4333 4.8560 -4.4533 40 1 4.5881 3.2336 -3.0055 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001257563282.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:42 Heat of formation + Delta-G solvation = 9.220399 kcal Electronic energy + Delta-G solvation = -20264.330022 eV Core-core repulsion = 17317.346409 eV Total energy + Delta-G solvation = -2946.983612 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 325.074 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.54201 -39.07358 -35.26015 -34.07563 -32.72404 -31.84811 -31.06060 -30.16094 -28.20918 -26.97621 -24.26381 -23.60286 -23.50434 -22.02039 -20.15537 -18.46243 -17.46869 -16.99251 -16.48122 -16.10654 -15.83989 -15.68037 -15.34563 -14.55172 -14.48942 -14.28015 -14.13423 -13.69871 -13.44282 -13.20120 -13.07241 -12.92118 -12.79123 -12.62130 -12.52804 -12.15307 -12.06883 -11.86336 -11.77515 -11.63767 -11.47815 -11.19140 -11.12149 -10.91837 -10.49005 -9.81559 -9.34126 -8.82586 -8.12091 -6.16711 0.27735 0.52729 0.73970 1.40151 1.41679 1.52044 2.43177 2.79658 3.20210 3.38021 3.90871 3.95760 4.09952 4.15464 4.35382 4.39412 4.47722 4.55677 4.57973 4.70093 4.78444 4.78945 4.90686 4.93851 5.00248 5.05653 5.16597 5.21097 5.27599 5.32129 5.36901 5.39568 5.42784 5.51240 5.75676 5.78518 5.81997 6.04398 6.20149 6.52697 6.80792 6.98779 7.49720 8.98346 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.012001 B = 0.004387 C = 0.003563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2332.592343 B = 6381.188700 C = 7857.540922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.064 3.936 3 N -0.525 5.525 4 C 0.215 3.785 5 C -0.501 4.501 6 H 0.077 0.923 7 C -0.002 4.002 8 N -0.940 5.940 9 Si 0.953 3.047 10 H -0.274 1.274 11 H -0.289 1.289 12 H -0.266 1.266 13 C 0.081 3.919 14 H 0.058 0.942 15 C -0.174 4.174 16 C -0.066 4.066 17 C -0.051 4.051 18 C -0.093 4.093 19 C -0.104 4.104 20 C -0.109 4.109 21 Br -0.062 7.062 22 C -0.101 4.101 23 C -0.120 4.120 24 H 0.048 0.952 25 H 0.051 0.949 26 H 0.060 0.940 27 H 0.086 0.914 28 H 0.010 0.990 29 H -0.036 1.036 30 H -0.011 1.011 31 H 0.259 0.741 32 H 0.079 0.921 33 H 0.027 0.973 34 H 0.063 0.937 35 H 0.100 0.900 36 H 0.084 0.916 37 H 0.131 0.869 38 H 0.132 0.868 39 H 0.142 0.858 40 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.983 -2.599 -19.050 19.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.063 4.063 3 N -0.249 5.249 4 C 0.088 3.912 5 C -0.539 4.539 6 H 0.095 0.905 7 C -0.199 4.199 8 N -0.582 5.582 9 Si 0.779 3.221 10 H -0.199 1.199 11 H -0.215 1.215 12 H -0.190 1.190 13 C -0.028 4.028 14 H 0.076 0.924 15 C -0.233 4.233 16 C -0.103 4.103 17 C -0.051 4.051 18 C -0.112 4.112 19 C -0.124 4.124 20 C -0.188 4.188 21 Br 0.024 6.976 22 C -0.120 4.120 23 C -0.139 4.139 24 H 0.067 0.933 25 H 0.070 0.930 26 H 0.079 0.921 27 H 0.104 0.896 28 H 0.028 0.972 29 H -0.019 1.019 30 H 0.007 0.993 31 H 0.068 0.932 32 H 0.098 0.902 33 H 0.046 0.954 34 H 0.082 0.918 35 H 0.118 0.882 36 H 0.103 0.897 37 H 0.149 0.851 38 H 0.150 0.850 39 H 0.160 0.840 40 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 4.374 -1.792 -19.656 20.217 hybrid contribution -0.310 -0.058 1.778 1.806 sum 4.064 -1.850 -17.878 18.427 Atomic orbital electron populations 1.21963 0.95638 1.00152 1.02334 1.21969 0.96109 0.89040 0.99227 1.62272 1.16265 1.16785 1.29578 1.19300 0.95733 0.91633 0.84498 1.21744 0.94428 1.37836 0.99932 0.90518 1.25806 1.01631 0.96355 0.96112 1.70090 1.35990 1.45703 1.06411 0.85617 0.80693 0.77671 0.78124 1.19950 1.21468 1.19005 1.21738 0.88200 0.98522 0.94363 0.92396 1.22379 1.01474 1.00357 0.99105 1.20752 1.01114 0.97436 0.90993 1.20035 0.94165 0.95977 0.94950 1.21137 0.94408 0.99615 0.95993 1.21211 1.00199 0.93500 0.97447 1.21825 0.96286 0.97327 1.03399 1.96634 1.78500 1.57593 1.64922 1.21220 0.92581 0.99946 0.98291 1.21286 1.01170 0.93969 0.97490 0.93260 0.92994 0.92106 0.89567 0.97168 1.01860 0.99305 0.93229 0.90177 0.95421 0.91788 0.88190 0.89725 0.85136 0.85023 0.84047 0.83517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.08 8.50 71.98 0.61 -4.47 16 2 C 0.06 2.20 4.36 86.30 0.38 2.58 16 3 N -0.53 -20.44 3.82 -875.52 -3.35 -23.79 16 4 C 0.21 11.02 4.11 85.56 0.35 11.37 16 5 C -0.50 -27.43 7.08 25.60 0.18 -27.25 16 6 H 0.08 4.07 5.58 -2.91 -0.02 4.06 16 7 C 0.00 -0.13 5.46 84.65 0.46 0.33 16 8 N -0.94 -56.97 13.29 21.45 0.28 -56.68 16 9 Si 0.95 44.69 29.54 68.60 2.03 46.71 16 10 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 11 H -0.29 -13.48 7.11 99.48 0.71 -12.78 16 12 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 13 C 0.08 2.54 2.29 44.91 0.10 2.65 16 14 H 0.06 2.04 7.84 -2.39 -0.02 2.02 16 15 C -0.17 -5.06 8.52 71.98 0.61 -4.44 16 16 C -0.07 -1.53 4.77 29.85 0.14 -1.39 16 17 C -0.05 -1.32 4.95 -19.86 -0.10 -1.42 16 18 C -0.09 -2.57 9.32 22.27 0.21 -2.36 16 19 C -0.10 -2.85 9.79 22.28 0.22 -2.64 16 20 C -0.11 -2.91 6.22 22.31 0.14 -2.77 16 21 Br -0.06 -1.48 33.70 -20.37 -0.69 -2.16 16 22 C -0.10 -2.47 9.79 22.29 0.22 -2.25 16 23 C -0.12 -2.89 9.70 22.27 0.22 -2.67 16 24 H 0.05 2.11 5.76 -2.38 -0.01 2.10 16 25 H 0.05 1.85 7.59 -2.39 -0.02 1.83 16 26 H 0.06 1.75 8.14 -2.38 -0.02 1.73 16 27 H 0.09 2.34 5.85 -2.38 -0.01 2.33 16 28 H 0.01 0.38 6.96 -2.38 -0.02 0.36 16 29 H -0.04 -2.05 7.17 -2.38 -0.02 -2.07 16 30 H -0.01 -0.64 7.76 -2.39 -0.02 -0.66 16 31 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 32 H 0.08 1.82 8.14 -2.38 -0.02 1.80 16 33 H 0.03 0.97 7.13 -2.39 -0.02 0.95 16 34 H 0.06 1.72 6.71 -2.39 -0.02 1.70 16 35 H 0.10 1.78 8.09 -2.39 -0.02 1.76 16 36 H 0.08 1.81 6.04 -2.39 -0.01 1.80 16 37 H 0.13 3.54 7.85 -2.91 -0.02 3.52 16 38 H 0.13 3.33 8.06 -2.91 -0.02 3.31 16 39 H 0.14 2.90 8.06 -2.91 -0.02 2.87 16 40 H 0.15 2.77 8.06 -2.91 -0.02 2.75 16 Total: -1.00 -63.16 335.61 3.04 -60.12 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: 1.02 Total: 10.52 kcal Atomic # 6 Polarization: -38.47 SS G_CDS: 3.74 Total: -34.72 kcal Atomic # 7 Polarization: -77.41 SS G_CDS: -3.06 Total: -80.47 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.71 kcal Atomic # 35 Polarization: -1.48 SS G_CDS: -0.69 Total: -2.16 kcal Total: -63.16 3.04 -60.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257563282.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.339 kcal (2) G-P(sol) polarization free energy of solvation -63.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.119 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds