Wall clock time and date at job start Tue Mar 31 2020 14:00:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43194 * 179.97438 * 2 1 4 4 C 1.38809 * 123.64922 * 68.36698 * 3 2 1 5 5 C 1.33340 * 115.05998 * 179.97438 * 4 3 2 6 6 S 1.70518 * 111.43455 * 359.97438 * 5 4 3 7 7 C 1.38226 * 123.64634 * 248.36878 * 3 2 1 8 8 C 1.46540 * 125.50209 * 359.95990 * 7 3 2 9 9 O 1.21606 * 120.00024 * 0.02562 * 8 7 3 10 10 O 1.34897 * 119.99976 * 180.02562 * 8 7 3 11 11 C 1.45204 * 116.99773 * 180.02562 * 10 8 7 12 12 C 1.53001 * 109.46986 * 180.02562 * 11 10 8 13 13 O 1.42902 * 109.46760 * 64.99969 * 12 11 10 14 14 C 1.42903 * 113.99803 * 180.02562 * 13 12 11 15 15 C 1.52998 * 109.47416 * 180.02562 * 14 13 12 16 16 O 1.42901 * 109.47187 * 64.99482 * 15 14 13 17 17 C 1.42896 * 113.99813 * 179.97438 * 16 15 14 18 18 C 1.50702 * 109.47062 * 180.02562 * 17 16 15 19 19 H 1.08004 * 119.99941 * 0.02562 * 18 17 16 20 20 C 1.37876 * 120.00090 * 180.02562 * 18 17 16 21 21 N 1.31517 * 119.99869 * 180.02562 * 20 18 17 22 22 Si 1.86797 * 120.00157 * 0.02562 * 20 18 17 23 23 H 1.48497 * 109.47014 * 89.99958 * 22 20 18 24 24 H 1.48500 * 109.47008 * 210.00343 * 22 20 18 25 25 H 1.48505 * 109.46703 * 329.99803 * 22 20 18 26 26 H 1.07998 * 122.46647 * 0.02562 * 4 3 2 27 27 H 1.08009 * 124.28284 * 180.26377 * 5 4 3 28 28 H 1.08999 * 109.47343 * 300.00228 * 11 10 8 29 29 H 1.09004 * 109.46838 * 60.00529 * 11 10 8 30 30 H 1.08991 * 109.46945 * 185.00335 * 12 11 10 31 31 H 1.09003 * 109.46810 * 305.00598 * 12 11 10 32 32 H 1.09004 * 109.46570 * 300.00187 * 14 13 12 33 33 H 1.08994 * 109.47034 * 59.99941 * 14 13 12 34 34 H 1.08996 * 109.47237 * 184.99550 * 15 14 13 35 35 H 1.09002 * 109.46852 * 305.00330 * 15 14 13 36 36 H 1.08996 * 109.47343 * 300.00048 * 17 16 15 37 37 H 1.09002 * 109.46951 * 60.00918 * 17 16 15 38 38 H 0.97003 * 120.00160 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.3373 -0.4250 -1.0741 5 6 4.6557 -0.3505 -0.8892 6 16 5.0345 0.2637 0.6557 7 6 3.3336 0.4252 1.0697 8 6 2.8118 0.9305 2.3423 9 8 1.6112 1.0015 2.5220 10 8 3.6633 1.3169 3.3146 11 6 3.0758 1.8065 4.5490 12 6 4.1887 2.1950 5.5245 13 8 4.9247 3.2983 4.9924 14 6 5.9939 3.7420 5.8303 15 6 6.7078 4.9205 5.1652 16 8 5.8124 6.0305 5.0752 17 6 6.3837 7.1902 4.4663 18 6 5.3573 8.2928 4.4243 19 1 4.3677 8.1249 4.8232 20 6 5.6814 9.5159 3.8767 21 7 4.7858 10.4784 3.8406 22 14 7.3926 9.8062 3.1862 23 1 7.4156 9.4354 1.7484 24 1 7.7492 11.2402 3.3334 25 1 8.3734 8.9736 3.9279 26 1 2.9002 -0.7889 -1.9922 27 1 5.3907 -0.6381 -1.6266 28 1 2.4584 2.6792 4.3366 29 1 2.4595 1.0247 4.9931 30 1 3.7506 2.4781 6.4814 31 1 4.8584 1.3470 5.6680 32 1 5.5934 4.0571 6.7939 33 1 6.7008 2.9260 5.9799 34 1 7.5765 5.2018 5.7603 35 1 7.0305 4.6321 4.1648 36 1 7.2455 7.5184 5.0473 37 1 6.7000 6.9491 3.4514 38 1 5.0139 11.3390 3.4557 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001263522203.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:00:28 Heat of formation + Delta-G solvation = -105.272097 kcal Electronic energy + Delta-G solvation = -23559.151026 eV Core-core repulsion = 19687.840944 eV Total energy + Delta-G solvation = -3871.310082 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.70639 -38.92144 -38.12071 -36.79536 -36.27678 -36.19759 -32.68030 -31.53592 -30.64146 -29.15677 -27.37904 -26.74619 -23.42574 -22.23119 -22.07050 -21.79873 -21.62577 -19.32838 -17.89126 -17.24390 -16.99760 -16.86928 -16.29319 -16.12817 -15.76264 -15.07268 -15.01913 -14.75130 -14.54841 -14.42777 -14.09174 -13.79242 -13.40538 -13.23659 -13.09868 -12.84080 -12.75284 -12.49861 -12.32379 -12.06152 -11.88802 -11.53800 -11.34130 -11.06324 -10.91184 -10.86724 -10.77125 -10.46195 -9.87634 -9.57794 -9.56956 -9.16790 -9.15500 -8.85376 -8.46547 -6.09884 -4.08893 -0.41719 0.76545 1.25372 1.39087 2.17092 2.26391 2.49767 3.19920 3.25410 3.31882 3.33001 3.58317 3.61914 4.28381 4.36369 4.50067 4.58734 4.59187 4.71204 4.93955 5.09148 5.14856 5.21185 5.27313 5.31561 5.40516 5.44478 5.46827 5.55814 5.81015 5.86067 6.05122 6.07634 6.59633 7.00241 7.22576 7.23691 7.35835 7.60641 8.02146 8.67801 9.02129 9.49104 11.03260 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.011901 B = 0.002587 C = 0.002456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2352.115967 B =10819.270636 C =11397.269061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.386 5.386 2 C 0.266 3.734 3 C 0.043 3.957 4 C -0.118 4.118 5 C -0.239 4.239 6 S 0.332 5.668 7 C -0.223 4.223 8 C 0.534 3.466 9 O -0.486 6.486 10 O -0.340 6.340 11 C 0.073 3.927 12 C 0.062 3.938 13 O -0.368 6.368 14 C 0.068 3.932 15 C 0.059 3.941 16 O -0.374 6.374 17 C 0.169 3.831 18 C -0.518 4.518 19 H 0.082 0.918 20 C 0.071 3.929 21 N -0.896 5.896 22 Si 0.877 3.123 23 H -0.273 1.273 24 H -0.282 1.282 25 H -0.266 1.266 26 H 0.158 0.842 27 H 0.183 0.817 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.076 0.924 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.054 0.946 35 H 0.048 0.952 36 H 0.002 0.998 37 H -0.001 1.001 38 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.376 -27.776 -5.429 28.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.062 5.062 2 C -0.052 4.052 3 C 0.022 3.978 4 C -0.148 4.148 5 C -0.377 4.377 6 S 0.603 5.397 7 C -0.346 4.346 8 C 0.376 3.624 9 O -0.374 6.374 10 O -0.257 6.257 11 C -0.001 4.001 12 C -0.015 4.015 13 O -0.287 6.287 14 C -0.008 4.008 15 C -0.019 4.019 16 O -0.293 6.293 17 C 0.093 3.907 18 C -0.556 4.556 19 H 0.100 0.900 20 C -0.130 4.130 21 N -0.534 5.534 22 Si 0.703 3.297 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.191 1.191 26 H 0.176 0.824 27 H 0.200 0.800 28 H 0.106 0.894 29 H 0.106 0.894 30 H 0.094 0.906 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.066 0.934 36 H 0.020 0.980 37 H 0.017 0.983 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 4.429 -27.149 -4.755 27.916 hybrid contribution 0.218 -0.043 -1.025 1.049 sum 4.646 -27.192 -5.780 28.186 Atomic orbital electron populations 1.81209 1.11558 1.06633 1.06768 1.24645 0.91570 0.94788 0.94213 1.15283 0.86124 1.02665 0.93689 1.19761 0.92241 1.03353 0.99461 1.25432 1.00607 1.07270 1.04431 1.83618 0.99349 1.52325 1.04435 1.23987 0.99863 1.13750 0.97005 1.19482 0.84693 0.75189 0.83030 1.90959 1.15755 1.50542 1.80182 1.86590 1.39554 1.74426 1.25119 1.23256 0.95801 1.00025 0.80971 1.22515 0.93581 0.90232 0.95192 1.88101 1.46246 1.48831 1.45544 1.22571 0.88937 0.95110 0.94203 1.22338 0.92529 0.87543 0.99472 1.87975 1.38013 1.21486 1.81837 1.20603 0.95032 0.83738 0.91281 1.20898 1.00021 0.94599 1.40111 0.89969 1.24778 0.97235 0.95567 0.95458 1.69881 1.34096 1.04044 1.45399 0.86838 0.84996 0.77816 0.80015 1.19892 1.20812 1.19106 0.82449 0.79951 0.89366 0.89378 0.90623 0.92313 0.92482 0.92483 0.92796 0.93415 0.98009 0.98307 0.92374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.39 -5.68 18.54 41.84 0.78 -4.90 16 2 C 0.27 3.29 13.90 -22.48 -0.31 2.97 16 3 C 0.04 0.40 5.74 -107.77 -0.62 -0.22 16 4 C -0.12 -0.68 9.99 -41.08 -0.41 -1.09 16 5 C -0.24 -1.02 10.87 29.02 0.32 -0.71 16 6 S 0.33 2.06 22.91 -107.50 -2.46 -0.40 16 7 C -0.22 -2.22 6.50 -36.24 -0.24 -2.45 16 8 C 0.53 6.83 7.92 34.08 0.27 7.10 16 9 O -0.49 -7.60 15.15 -19.35 -0.29 -7.89 16 10 O -0.34 -4.17 10.05 -43.82 -0.44 -4.61 16 11 C 0.07 0.83 5.86 37.16 0.22 1.04 16 12 C 0.06 0.66 6.33 37.16 0.24 0.90 16 13 O -0.37 -5.66 10.28 -48.79 -0.50 -6.16 16 14 C 0.07 0.94 6.32 37.16 0.23 1.17 16 15 C 0.06 1.01 6.32 37.16 0.23 1.24 16 16 O -0.37 -8.86 10.29 -40.08 -0.41 -9.27 16 17 C 0.17 4.33 4.76 36.01 0.17 4.50 16 18 C -0.52 -15.68 9.99 -34.44 -0.34 -16.02 16 19 H 0.08 2.73 8.06 -52.48 -0.42 2.31 16 20 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 21 N -0.90 -27.96 13.96 55.43 0.77 -27.19 16 22 Si 0.88 21.43 27.47 -169.99 -4.67 16.76 16 23 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 24 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 25 H -0.27 -6.18 6.54 56.52 0.37 -5.81 16 26 H 0.16 0.57 8.06 -52.49 -0.42 0.14 16 27 H 0.18 0.22 8.06 -52.48 -0.42 -0.20 16 28 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 29 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.00 0.06 7.20 -51.93 -0.37 -0.32 16 37 H 0.00 -0.02 7.57 -51.93 -0.39 -0.41 16 38 H 0.27 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 361.74 15.07 5.45 5.45 Total: -1.00 -37.79 361.74 -6.70 -44.49 By element: Atomic # 1 Polarization: -2.16 SS G_CDS: -4.58 Total: -6.74 kcal Atomic # 6 Polarization: 0.80 SS G_CDS: -0.34 Total: 0.46 kcal Atomic # 7 Polarization: -33.64 SS G_CDS: 1.55 Total: -32.09 kcal Atomic # 8 Polarization: -26.29 SS G_CDS: -1.65 Total: -27.94 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.67 Total: 16.76 kcal Atomic # 16 Polarization: 2.06 SS G_CDS: -2.46 Total: -0.40 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -37.79 -6.70 -44.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263522203.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.780 kcal (2) G-P(sol) polarization free energy of solvation -37.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds