Wall clock time and date at job start Tue Mar 31 2020 13:59:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86798 * 120.00011 * 2 1 4 4 H 1.48504 * 109.47157 * 240.00469 * 3 2 1 5 5 H 1.48505 * 109.47295 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47318 * 120.00216 * 3 2 1 7 7 C 1.37872 * 119.99923 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00137 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00079 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47414 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47381 * 179.97438 * 10 9 7 12 12 S 1.81398 * 109.46882 * 179.97438 * 11 10 9 13 13 O 1.42100 * 110.54759 * 68.37658 * 12 11 10 14 14 O 1.42097 * 110.54382 * 291.61800 * 12 11 10 15 15 N 1.65601 * 104.44643 * 179.97438 * 12 11 10 16 16 C 1.44748 * 119.59122 * 89.99787 * 15 12 11 17 17 C 1.54211 * 109.64536 * 277.68412 * 16 15 12 18 18 C 1.45736 * 113.00878 * 280.46655 * 17 16 15 19 19 S 1.81930 * 113.28977 * 65.64426 * 18 17 16 20 20 O 1.42100 * 108.54727 * 39.14888 * 19 18 17 21 21 O 1.42101 * 108.54523 * 170.04006 * 19 18 17 22 22 C 1.79958 * 102.17626 * 284.59494 * 19 18 17 23 23 C 1.46291 * 119.58919 * 269.97260 * 15 12 11 24 24 H 0.97000 * 119.99377 * 359.97438 * 1 2 3 25 25 H 1.08996 * 109.47491 * 59.99409 * 9 7 2 26 26 H 1.09005 * 109.46957 * 300.00026 * 9 7 2 27 27 H 1.08996 * 109.47361 * 59.99222 * 10 9 7 28 28 H 1.09005 * 109.46991 * 299.99897 * 10 9 7 29 29 H 1.08992 * 109.46937 * 59.99608 * 11 10 9 30 30 H 1.08998 * 109.46926 * 299.99341 * 11 10 9 31 31 H 1.09000 * 109.44519 * 157.62525 * 16 15 12 32 32 H 1.09004 * 109.44316 * 37.73825 * 16 15 12 33 33 H 1.08998 * 108.77700 * 159.55608 * 17 16 15 34 34 H 1.09007 * 108.77364 * 41.37798 * 17 16 15 35 35 H 1.08997 * 108.72171 * 304.65829 * 18 17 16 36 36 H 1.09004 * 108.71939 * 186.62328 * 18 17 16 37 37 H 1.09004 * 109.19601 * 204.79056 * 22 19 18 38 38 H 1.09005 * 109.19063 * 324.06338 * 22 19 18 39 39 H 1.08993 * 108.34651 * 258.55733 * 23 15 12 40 40 H 1.09005 * 108.34271 * 15.60286 * 23 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6964 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 6 1.4802 -4.9871 -0.0020 12 16 2.6590 -6.3658 -0.0025 13 8 3.3558 -6.4267 1.2345 14 8 3.3557 -6.4258 -1.2395 15 7 1.7086 -7.7220 -0.0023 16 6 1.2980 -8.3072 -1.2609 17 6 0.0691 -7.5525 -1.8072 18 6 -1.1773 -7.9563 -1.1691 19 16 -1.2541 -7.5249 0.5967 20 8 -0.6645 -6.2444 0.7752 21 8 -2.5792 -7.7476 1.0591 22 6 -0.1747 -8.7602 1.3365 23 6 1.2949 -8.3140 1.2699 24 1 -0.4849 0.8401 0.0004 25 1 0.6247 -2.5563 -0.8919 26 1 0.6240 -2.5574 0.8880 27 1 2.8713 -3.6047 0.8889 28 1 2.8726 -3.6040 -0.8910 29 1 0.8539 -5.0446 -0.8922 30 1 0.8533 -5.0450 0.8878 31 1 1.0413 -9.3553 -1.1072 32 1 2.1158 -8.2360 -1.9781 33 1 -0.0090 -7.7381 -2.8784 34 1 0.2146 -6.4839 -1.6483 35 1 -1.2887 -9.0358 -1.2707 36 1 -2.0069 -7.4716 -1.6839 37 1 -0.4583 -8.9059 2.3788 38 1 -0.2879 -9.7024 0.8001 39 1 1.9258 -9.1809 1.4661 40 1 1.4677 -7.5836 2.0604 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318638926.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:45 Heat of formation + Delta-G solvation = -140.094363 kcal Electronic energy + Delta-G solvation = -25333.853080 eV Core-core repulsion = 21596.476943 eV Total energy + Delta-G solvation = -3737.376137 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 325.090 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -38.55515 -37.07828 -36.93169 -36.21078 -35.75486 -34.56414 -34.16190 -32.06184 -31.33788 -27.68219 -27.04003 -23.90349 -23.72112 -22.14277 -20.32067 -19.07502 -18.92980 -17.83359 -17.60799 -16.92615 -16.59612 -16.28794 -15.74192 -15.48535 -15.20890 -14.83061 -14.45047 -14.34509 -14.15731 -13.88071 -13.61177 -13.05150 -12.60550 -12.39113 -12.32870 -12.30813 -12.19276 -12.02064 -11.90990 -11.89213 -11.59553 -11.49410 -11.25777 -11.11440 -11.04507 -10.80834 -10.68499 -10.51204 -10.32380 -9.77193 -9.58948 -9.18844 -8.93328 -8.30989 -5.96096 -3.98922 -0.28548 0.45346 2.39382 2.61197 3.37376 3.38516 3.41085 3.44247 3.53183 3.95318 4.02602 4.13398 4.25130 4.31864 4.43239 4.49936 4.65492 4.71590 4.90020 5.01323 5.04017 5.21479 5.36502 5.39345 5.41265 5.48785 5.50925 5.66129 5.81110 6.22933 6.27429 6.46929 6.79308 7.02618 7.71403 7.83560 8.03797 8.43780 9.07655 9.64845 11.14955 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.016521 B = 0.004179 C = 0.003672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.432901 B = 6698.863334 C = 7622.608638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.525 4.525 8 H 0.056 0.944 9 C 0.033 3.967 10 C -0.106 4.106 11 C -0.595 4.595 12 S 2.585 3.415 13 O -0.960 6.960 14 O -0.960 6.960 15 N -1.009 6.009 16 C 0.098 3.902 17 C -0.143 4.143 18 C -0.594 4.594 19 S 2.413 3.587 20 O -0.916 6.916 21 O -0.943 6.943 22 C -0.634 4.634 23 C 0.142 3.858 24 H 0.261 0.739 25 H 0.020 0.980 26 H 0.024 0.976 27 H 0.063 0.937 28 H 0.061 0.939 29 H 0.128 0.872 30 H 0.164 0.836 31 H 0.090 0.910 32 H 0.109 0.891 33 H 0.100 0.900 34 H 0.087 0.913 35 H 0.128 0.872 36 H 0.138 0.862 37 H 0.150 0.850 38 H 0.134 0.866 39 H 0.085 0.915 40 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.492 -23.817 -1.587 23.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.564 4.564 8 H 0.075 0.925 9 C -0.006 4.006 10 C -0.146 4.146 11 C -0.729 4.729 12 S 2.684 3.316 13 O -0.951 6.951 14 O -0.951 6.951 15 N -0.843 5.843 16 C -0.028 4.028 17 C -0.183 4.183 18 C -0.723 4.723 19 S 2.594 3.406 20 O -0.913 6.913 21 O -0.940 6.940 22 C -0.764 4.764 23 C 0.015 3.985 24 H 0.071 0.929 25 H 0.039 0.961 26 H 0.042 0.958 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.146 0.854 30 H 0.182 0.818 31 H 0.108 0.892 32 H 0.127 0.873 33 H 0.118 0.882 34 H 0.105 0.895 35 H 0.146 0.854 36 H 0.156 0.844 37 H 0.168 0.832 38 H 0.153 0.847 39 H 0.103 0.897 40 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -2.161 -23.145 -1.164 23.275 hybrid contribution -0.122 0.269 -0.415 0.510 sum -2.283 -22.876 -1.579 23.043 Atomic orbital electron populations 1.69966 1.06035 1.26704 1.50677 1.25011 0.94853 0.99215 0.95279 0.86647 0.79567 0.83048 0.78671 1.20216 1.21319 1.20187 1.21255 0.93153 0.91053 1.50907 0.92543 1.19032 0.93476 0.90050 0.97997 1.21525 0.99309 0.92300 1.01462 1.30774 1.14941 1.13339 1.13811 1.06013 0.76047 0.75298 0.74193 1.93552 1.70616 1.85808 1.45107 1.93541 1.70596 1.85783 1.45160 1.57667 1.70470 1.45897 1.10302 1.21532 0.97568 0.98257 0.85458 1.20744 0.91899 1.02917 1.02745 1.28943 1.06882 1.11961 1.24477 1.08388 0.75811 0.77564 0.78831 1.93615 1.77951 1.35363 1.84369 1.93601 1.34651 1.86617 1.79115 1.30717 1.11043 1.19267 1.15370 1.20634 0.90795 1.01413 0.85651 0.92944 0.96148 0.95752 0.91857 0.92074 0.85438 0.81835 0.89161 0.87336 0.88165 0.89477 0.85393 0.84391 0.83198 0.84735 0.89654 0.87924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.19 13.29 55.43 0.74 -26.45 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.53 -15.14 9.11 -34.44 -0.31 -15.46 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 9 C 0.03 0.87 4.97 -27.88 -0.14 0.73 16 10 C -0.11 -2.25 5.16 -26.73 -0.14 -2.38 16 11 C -0.59 -9.99 4.32 37.16 0.16 -9.83 16 12 S 2.59 38.81 5.20 -107.50 -0.56 38.25 16 13 O -0.96 -16.79 16.73 -57.54 -0.96 -17.76 16 14 O -0.96 -16.26 16.61 -57.54 -0.96 -17.22 16 15 N -1.01 -10.17 2.24 -114.69 -0.26 -10.43 16 16 C 0.10 0.71 5.45 -4.35 -0.02 0.68 16 17 C -0.14 -1.00 5.30 -29.53 -0.16 -1.16 16 18 C -0.59 -3.39 5.61 33.72 0.19 -3.21 16 19 S 2.41 21.09 5.11 -107.50 -0.55 20.54 16 20 O -0.92 -11.63 12.27 -57.84 -0.71 -12.33 16 21 O -0.94 -11.60 18.09 -57.84 -1.05 -12.64 16 22 C -0.63 -3.38 5.87 37.54 0.22 -3.16 16 23 C 0.14 1.12 5.38 -3.77 -0.02 1.10 16 24 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 25 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.02 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 28 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 29 H 0.13 1.90 5.83 -51.93 -0.30 1.60 16 30 H 0.16 2.72 5.67 -51.93 -0.29 2.43 16 31 H 0.09 0.33 7.63 -51.93 -0.40 -0.07 16 32 H 0.11 0.85 7.04 -51.93 -0.37 0.48 16 33 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.09 0.78 4.96 -51.93 -0.26 0.52 16 35 H 0.13 0.29 8.08 -51.91 -0.42 -0.13 16 36 H 0.14 0.71 8.14 -51.91 -0.42 0.29 16 37 H 0.15 0.57 8.14 -51.81 -0.42 0.15 16 38 H 0.13 0.26 7.93 -51.81 -0.41 -0.15 16 39 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.10 0.90 7.15 -51.93 -0.37 0.53 16 LS Contribution 332.48 15.07 5.01 5.01 Total: -1.00 -39.69 332.48 -10.37 -50.06 By element: Atomic # 1 Polarization: 2.86 SS G_CDS: -5.74 Total: -2.88 kcal Atomic # 6 Polarization: -30.78 SS G_CDS: -0.32 Total: -31.10 kcal Atomic # 7 Polarization: -37.36 SS G_CDS: 0.48 Total: -36.88 kcal Atomic # 8 Polarization: -56.28 SS G_CDS: -3.67 Total: -59.95 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Atomic # 16 Polarization: 59.90 SS G_CDS: -1.11 Total: 58.79 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -39.69 -10.37 -50.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318638926.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.037 kcal (2) G-P(sol) polarization free energy of solvation -39.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds